Pregenerated sensors for H2BC6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047246Ensembl transcript IDs: ENSMUST00000051091.5, ENSMUST00000091704.7
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGCTGGACCAAGAGCTCAAACTCAGAAGCTGTAAACTCCAGAGCCTaGCAGATTAAAGAGATGGGAGTGCCCAGAGCCACATCTAACATT | + |
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Preference number: 1 (lower is better) Translates to: CWTKSSNSEAVNSRA*QIKEMGVPRATSNI Trigger: AATGTTAGATGTGGCTCTGGGCACTCCCATCTCTTTAATCTGCCAGGCTCTGGAGTTTACAGCTTCTGAGTTTGAGCTCTTGGTCCAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR TCA 90 bp | CACTTCCTGATACTTCTACTTCCTACTTTTTCTCTCTCACAAGATTaGGTCAGGGTCCCTCCCTGCTGGACCAAGAGCTCAAACTCAGAA | + |
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Preference number: 1 (lower is better) Translates to: HFLILLLPTFSLSQD*VRVPPCWTKSSNSE Trigger: TTCTGAGTTTGAGCTCTTGGTCCAGCAGGGAGGGACCCTGACTCAATCTTGTGAGAGAGAAAAAGTAGGAAGTAGAAGTATCAGGAAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR CCA 90 bp | GCCAGTGCACAGCAGACAGTCAGGCTGAAGTCTATGAGGCCAGCTTaGTTTAGTGAGTTTCATACTTTGTCCCAAGAAACAAACAAACCA | + |
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Preference number: 1 (lower is better) Translates to: ASAQQTVRLKSMRPA*FSEFHTLSQETNKP Trigger: TGGTTTGTTTGTTTCTTGGGACAAAGTATGAAACTCACTAAACCAAGCTGGCCTCATAGACTTCAGCCTGACTGTCTGCTGTGCACTGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR GCA 90 bp | AGAACAAAAGACCGGATGTGTGCGCCACGGATCTGGACGCTCGGAGATGCCAGTGTAGCCTCTCTTCACTaGAGAAGTAGCCAATTTGGC | + |
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Preference number: 2 (lower is better) Translates to: RTKDRMCAPRIWTLGDASVASLH*RSSQFG Trigger: GCCAAATTGGCTACTTCTGCAGTGAAGAGAGGCTAC...ACTGGCATCTCCGAGCGTCCAGATCCGTGGCGCACACATCCGGTCTTTTGTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR CAA 90 bp | GCACTTCCTGATACTTCTACTTCCTACTTTTTCTCTCTCACAAGATaGAGTCAGGGTCCCTCCCTGCTGGACCAAGAGCTCAAACTCAGA | + |
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Preference number: 2 (lower is better) Translates to: ALPDTSTSYFFSLTR*SQGPSLLDQELKLR Trigger: TCTGAGTTTGAGCTCTTGGTCCAGCAGGGAGGGACCCTGACTCAATCTTGTGAGAGAGAAAAAGTAGGAAGTAGAAGTATCAGGAAGTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR GCA 90 bp | CTCACAAGATTGAGTCAGGGTCCCTCCCTGCTGGACCAAGAGCTCAAACTCAGATTCCACAGCCTTAATTaGAAAGAAAGTGATGTGGCT | + |
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Preference number: 2 (lower is better) Translates to: LTRLSQGPSLLDQELKLRFHSLN*KESDVA Trigger: AGCCACATCACTTTCTTTGCAATTAAGGCTGTGGAA...TCTGAGTTTGAGCTCTTGGTCCAGCAGGGAGGGACCCTGACTCAATCTTGTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR GCA 90 bp | GTGTGTGTGTTCTATTTGCTCTGGGATGTCTGTAGGTCAGAGGACCTATTTTGTGTAGCCTCTCTTCACTaGAGAAGTAGCCAATTTGGC | + |
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Preference number: 2 (lower is better) Translates to: VCVFYLLWDVCRSEDLFCVASLH*RSSQFG Trigger: GCCAAATTGGCTACTTCTGCAGTGAAGAGAGGCTAC...ACAAAATAGGTCCTCTGACCTACAGACATCCCAGAGCAAATAGAACACACACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR GCA 90 bp | GTGTGTGTGTTCTATTTGCTCTGGGATGTCTGTAGGTCAGAGGACCTATTTTGTTTAAAGAGATGGGAGTaGCCAGAGCCACATCTAACA | + |
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Preference number: 2 (lower is better) Translates to: VCVFYLLWDVCRSEDLFCLKRWE*PEPHLT Trigger: TGTTAGATGTGGCTCTGGGCACTCCCATCTCTTTAA...ACAAAATAGGTCCTCTGACCTACAGACATCCCAGAGCAAATAGAACACACACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR TCA 90 bp | CAACAAATCACAAACAAGAAAGGAGGAACACTACAAGTTGTAGAGATCTACACCTCGCTTTCAGGGAGCTaGACAGAACTCTCTCCATTC | + |
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Preference number: 2 (lower is better) Translates to: QQITNKKGGTLQVVEIYTSLSGS*TELSPF Trigger: GAATGGAGAGAGTTCTGTTCAGCTCCCTGAAAGCGA...GGTGTAGATCTCTACAACTTGTAGTGTTCCTCCTTTCTTGTTTGTGATTTGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR TCA 90 bp | AAAACACTTTACACAGTGAGTAGCCTCTTGGAGTACAGTTGCAATTTTGTTACTTCGCTTTCAGGGAGCTaGACAGAACTCTCTCCATTC | + |
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Preference number: 2 (lower is better) Translates to: KTLYTVSSLLEYSCNFVTSLSGS*TELSPF Trigger: GAATGGAGAGAGTTCTGTTCAGCTCCCTGAAAGCGA...AGTAACAAAATTGCAACTGTACTCCAAGAGGCTACTCACTGTGTAAAGTGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR GCA 90 bp | CAACAAATCACAAACAAGAAAGGAGGAACACTACAAGTTGTAGAGATCTACACCTTAAAGAGATGGGAGTaGCCAGAGCCACATCTAACA | + |
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Preference number: 2 (lower is better) Translates to: QQITNKKGGTLQVVEIYTLKRWE*PEPHLT Trigger: TGTTAGATGTGGCTCTGGGCACTCCCATCTCTTTAA...GGTGTAGATCTCTACAACTTGTAGTGTTCCTCCTTTCTTGTTTGTGATTTGTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR CCA 90 bp | GTGTGTGTGTTCTATTTGCTCTGGGATGTCTGTAGGTCAGAGGACCTATTTTGTTCAGGTGTTCATTTTTaGTGGCAAAACACTTTACAC | + |
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Preference number: 2 (lower is better) Translates to: VCVFYLLWDVCRSEDLFCSGVHF*WQNTLH Trigger: GTGTAAAGTGTTTTGCCACCAAAAATGAACACCTGA...ACAAAATAGGTCCTCTGACCTACAGACATCCCAGAGCAAATAGAACACACACAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR CCA 90 bp | ATTGTGTGTGTGTGTTCTATTTGCTCTGGGATGTCTGTAGGTCAGAGGACCTATTCAGGTGTTCATTTTTaGTGGCAAAACACTTTACAC | + |
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Preference number: 2 (lower is better) Translates to: IVCVCSICSGMSVGQRTYSGVHF*WQNTLH Trigger: GTGTAAAGTGTTTTGCCACCAAAAATGAACACCTGA...ATAGGTCCTCTGACCTACAGACATCCCAGAGCAAATAGAACACACACACACAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR GCA 90 bp | TACACATTTCAGTGCACAGCAGGTTCAATCAGGAATGCTTTAATAATGAACAGTTGTGTGTGTTCTATTTaGTCTGGGATGTCTGTAGGT | + |
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Preference number: 2 (lower is better) Translates to: YTFQCTAGSIRNALIMNSCVCSI*SGMSVG Trigger: ACCTACAGACATCCCAGAGCAAATAGAACACACACA...ACTGTTCATTATTAAAGCATTCCTGATTGAACCTGCTGTGCACTGAAATGTGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR CCA 90 bp | CAACAAATCACAAACAAGAAAGGAGGAACACTACAAGTTGTAGAGATCTACACCGGTGTTCATTTTTGGTaGCAAAACACTTTACACAGT | + |
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Preference number: 2 (lower is better) Translates to: QQITNKKGGTLQVVEIYTGVHFW*QNTLHS Trigger: ACTGTGTAAAGTGTTTTGCCACCAAAAATGAACACC...GGTGTAGATCTCTACAACTTGTAGTGTTCCTCCTTTCTTGTTTGTGATTTGTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR TCA 72 bp | TGGCCCTTCGTGCTGAGACTTTCGCTTTCAGGGAGCTaGACAGAACTCTCTCCATTCAGGGCGGCGCCGCAT | + |
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Preference number: 3 (lower is better) Translates to: WPFVLRLSLSGS*TELSPFRAAPH Trigger: ATGCGGCGCCGCCCTGAATGGAGAGAGTTCTGTTCAGCTCCCTGAAAGCGAAAGTCTCAGCACGAAGGGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR GCA 72 bp | ACAGTACAGCAGCAGGCTTGGAGGTACACATGCCAGTaGACAGCAGACAGTCAGGCTGAAGTCTATGAGGCC | + |
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Preference number: 3 (lower is better) Translates to: TVQQQAWRYTCQ*TADSQAEVYEA Trigger: GGCCTCATAGACTTCAGCCTGACTGTCTGCTGTGCACTGGCATGTGTACCTCCAAGCCTGCTGCTGTACTGT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR CCA 72 bp | CTTTACCCAGCTTCAGAAGGGAGCCATGGTAGAGGCTaGATGGAGGCAAGACTAGCTCTGGAACTGGGCCTT | + |
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Preference number: 3 (lower is better) Translates to: LYPASEGSHGRG*MEARLALELGL Trigger: AAGGCCCAGTTCCAGAGCTAGTCTTGCCTCCATCCAGCCTCTACCATGGCTCCCTTCTGAAGCTGGGTAAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR TCA 72 bp | GTGCGCCACGGATCTGGACGCTCGGAGATGCCAGTGTaGAACGTTCGGGGTTCTTTATTCAGAACAGAAATG | + |
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Preference number: 3 (lower is better) Translates to: VRHGSGRSEMPV*NVRGSLFRTEM Trigger: CATTTCTGTTCTGAATAAAGAACCCCGAACGTTTCACACTGGCATCTCCGAGCGTCCAGATCCGTGGCGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR TCA 72 bp | TCTCCATTCAGGGCGGCGCCGCATAAAATGGCGACCTaGACGTCACTGAAAACCAGTTTAACAAGCACCGAG | + |
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Preference number: 3 (lower is better) Translates to: SPFRAAPHKMAT*TSLKTSLTSTE Trigger: CTCGGTGCTTGTTAAACTGGTTTTCAGTGACGTTCAGGTCGCCATTTTATGCGGCGCCGCCCTGAATGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR CCA 72 bp | AAGAGCTCAAACTCAGAAGCTGTAAACTCCAGAGCCTaGCAGATTAAAGAGATGGGAGTGCCCAGAGCCACA | + |
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Preference number: 3 (lower is better) Translates to: KSSNSEAVNSRA*QIKEMGVPRAT Trigger: TGTGGCTCTGGGCACTCCCATCTCTTTAATCTGCCAGGCTCTGGAGTTTACAGCTTCTGAGTTTGAGCTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR CAA 90 bp | AGGCTGAAGTCTATGAGGCCAGCTTGGTTTAGTGAGTTTCATACTTTGTCCCAAGTGTGTGTGTTCTATTaGCTCTGGGATGTCTGTAGG | + |
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Preference number: 3 (lower is better) Translates to: RLKSMRPAWFSEFHTLSQVCVFY*LWDVCR Trigger: CCTACAGACATCCCAGAGCAAATAGAACACACACAC...TTGGGACAAAGTATGAAACTCACTAAACCAAGCTGGCCTCATAGACTTCAGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR CAA 90 bp | GTGCACAGCAGGTTCAATCAGGAATGCTTTAATAATGAACAGTACAGCAGCAGGAGTCAGGAGAGGGTTTaGGGAATTTTCTTGGTGTTA | + |
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Preference number: 3 (lower is better) Translates to: VHSRFNQECFNNEQYSSRSQERV*GIFLVL Trigger: TAACACCAAGAAAATTCCCAAAACCCTCTCCTGACT...CCTGCTGCTGTACTGTTCATTATTAAAGCATTCCTGATTGAACCTGCTGTGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR GCA 72 bp | GTACACATTTCAGTGCACAGCAGGTTCAATCAGGAATaGTTTAATAATGAACAGTACAGCAGCAGGCTTGGA | + |
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Preference number: 3 (lower is better) Translates to: VHISVHSRFNQE*FNNEQYSSRLG Trigger: TCCAAGCCTGCTGCTGTACTGTTCATTATTAAAGCATTCCTGATTGAACCTGCTGTGCACTGAAATGTGTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR CCA 72 bp | AAAAACCCACATTGTGTGTGTGTGTTCTATTTGCTCTaGGATGTCTGTAGGTCAGAGGACCTATTTTGTAGG | + |
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Preference number: 3 (lower is better) Translates to: KNPHCVCVFYLL*DVCRSEDLFCR Trigger: CCTACAAAATAGGTCCTCTGACCTACAGACATCCCAGAGCAAATAGAACACACACACACAATGTGGGTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR CAA 90 bp | GTGTGTGTGTTCTATTTGCTCTGGGATGTCTGTAGGTCAGAGGACCTATTTTGTCTCAGGTGTTCATTTTaGGTGGCAAAACACTTTACA | + |
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Preference number: 3 (lower is better) Translates to: VCVFYLLWDVCRSEDLFCLRCSF*VAKHFT Trigger: TGTAAAGTGTTTTGCCACCAAAAATGAACACCTGAG...ACAAAATAGGTCCTCTGACCTACAGACATCCCAGAGCAAATAGAACACACACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR CAA 90 bp | TACACATTTCAGTGCACAGCAGGTTCAATCAGGAATGCTTTAATAATGAACAGTAGCTTAGGAAGGATGTaGCATAAAGGCACTTTACCC | + |
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Preference number: 3 (lower is better) Translates to: YTFQCTAGSIRNALIMNSSLGRM*HKGTLP Trigger: GGGTAAAGTGCCTTTATGCAACATCCTTCCTAAGCT...ACTGTTCATTATTAAAGCATTCCTGATTGAACCTGCTGTGCACTGAAATGTGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR-3UTR CAA 90 bp | AAAACACTTTACACAGTGAGTAGCCTCTTGGAGTACAGTTGCAATTTTGTTACTAAAATGGAGATCTTGTaGCTTCTCCTACAACTTAGT | + |
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Preference number: 3 (lower is better) Translates to: KTLYTVSSLLEYSCNFVTKMEIL*LLLQLS Trigger: ACTAAGTTGTAGGAGAAGCAACAAGATCTCCATTTT...AGTAACAAAATTGCAACTGTACTCCAAGAGGCTACTCACTGTGTAAAGTGTTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR GCA 72 bp | GGAACACTACAAGTTGTAGAGATCTACACCTATAATTaGATATTTAGAAGGGTGAAGCAGAGAGTTTTAGTT | + |
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Preference number: 3 (lower is better) Translates to: GTLQVVEIYTYN*IFRRVKQRVLV Trigger: AACTAAAACTCTCTGCTTCACCCTTCTAAATATGCAATTATAGGTGTAGATCTCTACAACTTGTAGTGTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR CAA 72 bp | AGGAATGCTTTAATAATGAACAGTACAGCAGCAGGCTaGGAGGTACACATGCCAGTGCACAGCAGACAGTCA | + |
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Preference number: 4 (lower is better) Translates to: RNALIMNSTAAG*EVHMPVHSRQS Trigger: TGACTGTCTGCTGTGCACTGGCATGTGTACCTCCAAGCCTGCTGCTGTACTGTTCATTATTAAAGCATTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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| 3UTR CAA 72 bp | TTTGGTGGCAAAACACTTTACACAGTGAGTAGCCTCTaGGAGTACAGTTGCAATTTTGTTACTTTAAAGTGG | + |
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Preference number: 4 (lower is better) Translates to: FGGKTLYTVSSL*EYSCNFVTLKW Trigger: CCACTTTAAAGTAACAAAATTGCAACTGTACTCCAAGAGGCTACTCACTGTGTAAAGTGTTTTGCCACCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051091.5 ENSMUST00000091704.7 |
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