Pregenerated sensors for H2BC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018102Ensembl transcript IDs: ENSMUST00000018246.6
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | AAGGCTCCTCAGTCAGTCATGGAGTTACAAGTCACCACATTGCCTCCTCTCTCTGCTAGTATCACCCATTaGCACTGTCTTGAGGTTACA | + |
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Preference number: 3 (lower is better) Translates to: KAPQSVMELQVTTLPPLSASITH*HCLEVT Trigger: TGTAACCTCAAGACAGTGCAAATGGGTGATACTAGC...AGAGAGAGGAGGCAATGTGGTGACTTGTAACTCCATGACTGACTGAGGAGCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018246.6 |
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| 3UTR-3UTR CAA 90 bp | AAGGCTCCTCAGTCAGTCATGGAGTTACAAGTCACCACATTGCCTCCTCTCTCTTCTCTCCTTTTCTCTTaGAACAACAGTCCTAGGGAC | + |
|
Preference number: 3 (lower is better) Translates to: KAPQSVMELQVTTLPPLSSLLFS*NNSPRD Trigger: GTCCCTAGGACTGTTGTTCAAAGAGAAAAGGAGAGA...AGAGAGAGGAGGCAATGTGGTGACTTGTAACTCCATGACTGACTGAGGAGCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018246.6 |
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| 3UTR-3UTR CAA 90 bp | AAGGCTCCTCAGTCAGTCATGGAGTTACAAGTCACCACATTGCCTCCTCTCTCTCTTCTCAGTTGTTCCTaGAGTTCTGAAACTATGGTG | + |
|
Preference number: 3 (lower is better) Translates to: KAPQSVMELQVTTLPPLSLLSCS*SSETMV Trigger: CACCATAGTTTCAGAACTCAAGGAACAACTGAGAAG...AGAGAGAGGAGGCAATGTGGTGACTTGTAACTCCATGACTGACTGAGGAGCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018246.6 |
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| 3UTR CAA 72 bp | GCTCCTCAGTCAGTCATGGAGTTACAAGTCACCACATaGCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: APQSVMELQVTT*PPLSLSLSLSL Trigger: GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGCAATGTGGTGACTTGTAACTCCATGACTGACTGAGGAGC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018246.6 |
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