Pregenerated sensors for H2BC24 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069303

Ensembl transcript IDs: ENSMUST00000110467.2, ENSMUST00000180288.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	GGGGTAGTGGCACTCACCTTTAATCCCAGCACTCAGGTGGATCTCTaGGTTCAAGGGCAGTCTGATCTACAGAGTGAGTTCCAGGAGAGC	+
Preference number: 1 (lower is better) Translates to: GVVALTFNPSTQVDL*VQGQSDLQSEFQES Trigger: GCTCTCCTGGAACTCACTCTGTAGATCAGACTGCCCTTGAACTCAGAGATCCACCTGAGTGCTGGGATTAAAGGTGAGTGCCACTACCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110467.2 ENSMUST00000180288.2
3UTR TCA 90 bp	GTAGTTGGGTCTTTCATTTTATTTACATATGCCTTTTTGCCTGTGTaGCAAGTACGCCACGTGTTTGGGTACTGGTCACACAGTACACCT	+
Preference number: 1 (lower is better) Translates to: VVGSFILFTYAFLPV*QVRHVFGYWSHSTP Trigger: AGGTGTACTGTGTGACCAGTACCCAAACACGTGGCGTACTTGTCACACAGGCAAAAAGGCATATGTAAATAAAATGAAAGACCCAACTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110467.2
3UTR CAA 90 bp	TGTTTGGGTACTGGTCACACAGTACACCTAGATCAGAGGTGGGTGTaGGATGCGCTGGAGTCAGAGTTACAGCTGATTGTGTCACACCTG	+
Preference number: 2 (lower is better) Translates to: CLGTGHTVHLDQRWV*DALESELQLIVSHL Trigger: CAGGTGTGACACAATCAGCTGTAACTCTGACTCCAGCGCATCCAACACCCACCTCTGATCTAGGTGTACTGTGTGACCAGTACCCAAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110467.2
3UTR-3UTR TCA 90 bp	TTAGGGAACTCACGGTCCCTGCGCAGGTTCTTGATTTCATCTATAAAAGTATTTTCACTGTCTGTGTCTTaGAGACACTCATCACAGATC	+
Preference number: 2 (lower is better) Translates to: LGNSRSLRRFLISSIKVFSLSVS*RHSSQI Trigger: GATCTGTGATGAGTGTCTTCAAGACACAGACAGTGA...AAATACTTTTATAGATGAAATCAAGAACCTGCGCAGGGACCGTGAGTTCCCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000110467.2 ENSMUST00000180288.2
3UTR-3UTR TCA 90 bp	ATGACTGTAGTTGGCATACTTACCATCTCAAAGGTTTATGAAGAGATAGAAAACTCAGGGCCTTGTTTCTaGGCTATACTGATTTCTCCA	+
Preference number: 2 (lower is better) Translates to: MTVVGILTISKVYEEIENSGPCF*AILISP Trigger: TGGAGAAATCAGTATAGCTCAGAAACAAGGCCCTGA...GTTTTCTATCTCTTCATAAACCTTTGAGATGGTAAGTATGCCAACTACAGTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110467.2
3UTR CCA 72 bp	TTGGGTACTGGTCACACAGTACACCTAGATCAGAGGTaGGTGTTGGATGCGCTGGAGTCAGAGTTACAGCTG	+
Preference number: 3 (lower is better) Translates to: LGTGHTVHLDQR*VLDALESELQL Trigger: CAGCTGTAACTCTGACTCCAGCGCATCCAACACCCACCTCTGATCTAGGTGTACTGTGTGACCAGTACCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110467.2
3UTR CCA 72 bp	CAGACACCTTTAAAGGCTCACCAGTGGAAGTCTGTCTaGGTGAGCTGGAGGGTTTCATTAAGGGGACAGAAG	+
Preference number: 3 (lower is better) Translates to: QTPLKAHQWKSV*VSWRVSLRGQK Trigger: CTTCTGTCCCCTTAATGAAACCCTCCAGCTCACCCAGACAGACTTCCACTGGTGAGCCTTTAAAGGTGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110467.2 ENSMUST00000180288.2
3UTR-3UTR CAA 90 bp	CGAATTCACGAAAACATACACAGGTACACGGTGCTACTACTTGTAACTACTTGTTTTGTCTTGAAAAACTaGGTGTGTGTTTTTCCACCA	+
Preference number: 3 (lower is better) Translates to: RIHENIHRYTVLLLVTTCFVLKN*VCVFPP Trigger: TGGTGGAAAAACACACACCAAGTTTTTCAAGACAAA...ACAAGTAGTTACAAGTAGTAGCACCGTGTACCTGTGTATGTTTTCGTGAATTCG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000110467.2
CDS-3UTR CAA 90 bp	GCACTCAGGTGGATCTCTGAGTTCAAGGGCAGTCTGATCTACAGAGTGAGTTCCTTTTGTCTTGAAAAATaGGAGCTGGTGTACTTGGTG	+
Preference number: 5 (lower is better) Translates to: ALRWISEFKGSLIYRVSSFCLEK*ELVYLV Trigger: CACCAAGTACACCAGCTCCAATTTTTCAAGACAAAA...GGAACTCACTCTGTAGATCAGACTGCCCTTGAACTCAGAGATCCACCTGAGTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180288.2