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Pregenerated sensors for H2BC23 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069307

Ensembl transcript IDs: ENSMUST00000091749.4, ENSMUST00000110469.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGGTACTGGTCACACAGTACACCTAGATCAGAGGTGGGTGTTGGATaGGCTGGAGTCAGAGTTACAGCTGATTGTGTCACACCTGCCAGG +
Preference number: 1 (lower is better)
Translates to: GYWSHSTPRSEVGVG*AGVRVTADCVTPAR
Trigger: CCTGGCAGGTGTGACACAATCAGCTGTAACTCTGACTCCAGCGCATCCAACACCCACCTCTGATCTAGGTGTACTGTGTGACCAGTACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110469.2
3UTR GCA 90 bp CTACATGGTCTGTTTGGTAGTTGGGTCTTTCATTTTATTTACATATaGCTTTTTGCCTGTGTGACAAGTACGCCACGTGTTTGGGTACTG +
Preference number: 1 (lower is better)
Translates to: LHGLFGSWVFHFIYI*LFACVTSTPRVWVL
Trigger: CAGTACCCAAACACGTGGCGTACTTGTCACACAGGCAAAAAGGCATATGTAAATAAAATGAAAGACCCAACTACCAAACAGACCATGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110469.2
3UTR GCA 90 bp TGGTGTGTGTTTTTCCACCAAACACAAGGCTGTATTATTGTAATTTaGTATCCAACAGATTACTTCTGGTCTTTTGAATCACAAACTATG +
Preference number: 1 (lower is better)
Translates to: WCVFFHQTQGCIIVI*YPTDYFWSFESQTM
Trigger: CATAGTTTGTGATTCAAAAGACCAGAAGTAATCTGTTGGATAGCAAATTACAATAATACAGCCTTGTGTTTGGTGGAAAAACACACACCA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110469.2
3UTR-3UTR CCA 90 bp GCCAGGGGTGCTGGGAACCGAACTCAGGTTCTTGTGAAAAGTAGTAAGGGCTCTCAGTGGAAGTCTGTCTaGGTGAGCTGGAGGGTTTCA +
Preference number: 2 (lower is better)
Translates to: ARGAGNRTQVLVKSSKGSQWKSV*VSWRVS
Trigger: TGAAACCCTCCAGCTCACCCAGACAGACTTCCACTG...AGAGCCCTTACTACTTTTCACAAGAACCTGAGTTCGGTTCCCAGCACCCCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110469.2
3UTR TCA 72 bp GCGGTGATGACACTCGGTGGCGACGAGCAAGCGTTCTaGAAGTTCTTAAGCCAGTTTCCACTCATTAGCCGT +
Preference number: 3 (lower is better)
Translates to: AVMTLGGDEQAF*KFLSQFPLISR
Trigger: ACGGCTAATGAGTGGAAACTGGCTTAAGAACTTTCAGAACGCTTGCTCGTCGCCACCGAGTGTCATCACCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091749.4
ENSMUST00000110469.2
3UTR TCA 72 bp GCACTCACCTTTAATCCCAGCACTCAGGTGGATCTCTaGGTTCAAGGGCAGTCTGATCTACAGAGTGAGTTC +
Preference number: 3 (lower is better)
Translates to: ALTFNPSTQVDL*VQGQSDLQSEF
Trigger: GAACTCACTCTGTAGATCAGACTGCCCTTGAACTCAGAGATCCACCTGAGTGCTGGGATTAAAGGTGAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091749.4
ENSMUST00000110469.2
3UTR TCA 72 bp TCTTTCATTTTATTTACATATGCCTTTTTGCCTGTGTaGCAAGTACGCCACGTGTTTGGGTACTGGTCACAC +
Preference number: 3 (lower is better)
Translates to: SFILFTYAFLPV*QVRHVFGYWSH
Trigger: GTGTGACCAGTACCCAAACACGTGGCGTACTTGTCACACAGGCAAAAAGGCATATGTAAATAAAATGAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110469.2
3UTR GCA 72 bp CTGTTTGGTAGTTGGGTCTTTCATTTTATTTACATATaGCTTTTTGCCTGTGTGACAAGTACGCCACGTGTT +
Preference number: 3 (lower is better)
Translates to: LFGSWVFHFIYI*LFACVTSTPRV
Trigger: AACACGTGGCGTACTTGTCACACAGGCAAAAAGGCATATGTAAATAAAATGAAAGACCCAACTACCAAACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110469.2
3UTR CAA 72 bp GGCCCTTTAATGGGTCAGGCCAAGGGGGTTGGGATTTaGATTCCTGACAGGAAAAGGACGACTTACCAGCGA +
Preference number: 4 (lower is better)
Translates to: GPLMGQAKGVGI*IPDRKRTTYQR
Trigger: TCGCTGGTAAGTCGTCCTTTTCCTGTCAGGAATCAAAATCCCAACCCCCTTGGCCTGACCCATTAAAGGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091749.4
ENSMUST00000110469.2
3UTR CAA 72 bp ACTGGTCACACAGTACACCTAGATCAGAGGTGGGTGTaGGATGCGCTGGAGTCAGAGTTACAGCTGATTGTG +
Preference number: 4 (lower is better)
Translates to: TGHTVHLDQRWV*DALESELQLIV
Trigger: CACAATCAGCTGTAACTCTGACTCCAGCGCATCCAACACCCACCTCTGATCTAGGTGTACTGTGTGACCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110469.2
3UTR CAA 72 bp AGATCCAAGCATCCCAGTAAAACCTACATGGTCTGTTaGGTAGTTGGGTCTTTCATTTTATTTACATATGCC +
Preference number: 4 (lower is better)
Translates to: RSKHPSKTYMVC*VVGSFILFTYA
Trigger: GGCATATGTAAATAAAATGAAAGACCCAACTACCAAACAGACCATGTAGGTTTTACTGGGATGCTTGGATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110469.2