Pregenerated sensors for H2BC22 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069308

Ensembl transcript IDs: ENSMUST00000110473.3

Found 2 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 72 bp	ACTTCGGTCTCCACTCAGACAAGCCTCTATTTATGTTaGAGCTTCCGTACAATCATTTTAATTTCCTCAACT	+
Preference number: 3 (lower is better) Translates to: TSVSTQTSLYLC*SFRTIILISST Trigger: AGTTGAGGAAATTAAAATGATTGTACGGAAGCTGCAACATAAATAGAGGCTTGTCTGAGTGGAGACCGAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110473.3
CDS-3UTR CAA 90 bp	GACAAGCCTCTATTTATGTTGCAGCTTCCGTACAATCATTTTAATTTCCTCAACTTGTTCCACAGGATTTaGGAGCTGGTGTACTTGGTG	+
Preference number: 5 (lower is better) Translates to: DKPLFMLQLPYNHFNFLNLFHRI*ELVYLV Trigger: CACCAAGTACACCAGCTCCAAAATCCTGTGGAACAA...GTTGAGGAAATTAAAATGATTGTACGGAAGCTGCAACATAAATAGAGGCTTGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110473.3

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu