Pregenerated sensors for H2BC21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068854Ensembl transcript IDs: ENSMUST00000090781.8
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAATCCCAAGTAAGTAGGGCTCTAATGCCAGTTCAGGAACAGACTTaGCATCTCCAGCAAGCAGGCAAAGAACAAGCTTCCTTCTTCCAT | + |
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Preference number: 1 (lower is better) Translates to: ESQVSRALMPVQEQT*HLQQAGKEQASFFH Trigger: ATGGAAGAAGGAAGCTTGTTCTTTGCCTGCTTGCTGGAGATGGCAAGTCTGTTCCTGAACTGGCATTAGAGCCCTACTTACTTGGGATTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR CCA 90 bp | GAACACAAACACATGGCTTACTGGAGTTCAATGGCTGGGGTTCAATaGCTGTCACCCAACGGAAGGTCCAATAATCCAGTAGTTGTTCAG | + |
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Preference number: 1 (lower is better) Translates to: EHKHMAYWSSMAGVQ*LSPNGRSNNPVVVQ Trigger: CTGAACAACTACTGGATTATTGGACCTTCCGTTGGGTGACAGCCATTGAACCCCAGCCATTGAACTCCAGTAAGCCATGTGTTTGTGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR CCA 90 bp | CAAGCTTCCTTCTTCCATGTCCTTAATAGAAGCTGCCAGCTGGCGTaGCCCAGATTAAAGGTGGGAAAGAACCAGATTAAAAATGGTTCT | + |
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Preference number: 1 (lower is better) Translates to: QASFFHVLNRSCQLA*PRLKVGKNQIKNGS Trigger: AGAACCATTTTTAATCTGGTTCTTTCCCACCTTTAATCTGGGCCACGCCAGCTGGCAGCTTCTATTAAGGACATGGAAGAAGGAAGCTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR CCA 90 bp | GTGAATGGATTTATTCGATCTATGACAATGTTTGGAACTCTCTTTTaGATCCACAAAGCTCCTGCAATCAGCTCCAATAACCCTTACCAC | + |
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Preference number: 1 (lower is better) Translates to: VNGFIRSMTMFGTLF*IHKAPAISSNNPYH Trigger: GTGGTAAGGGTTATTGGAGCTGATTGCAGGAGCTTTGTGGATCCAAAAGAGAGTTCCAAACATTGTCATAGATCGAATAAATCCATTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR TCA 90 bp | AAGCTCCTGCAATCAGCTCCAATAACCCTTACCACAAAGCAGAATTaGGAAAGCAATCAGACCATCAAGAATCTTCACCAACAAAATCAA | + |
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Preference number: 1 (lower is better) Translates to: KLLQSAPITLTTKQN*ESNQTIKNLHQQNQ Trigger: TTGATTTTGTTGGTGAAGATTCTTGATGGTCTGATTGCTTTCTCAATTCTGCTTTGTGGTAAGGGTTATTGGAGCTGATTGCAGGAGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR CCA 90 bp | AAATGCACATGCAGTGAATGGATTTATTCGATCTATGACAATGTTTaGAACTCTCTTTTGGATCCACAAAGCTCCTGCAATCAGCTCCAA | + |
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Preference number: 1 (lower is better) Translates to: KCTCSEWIYSIYDNV*NSLLDPQSSCNQLQ Trigger: TTGGAGCTGATTGCAGGAGCTTTGTGGATCCAAAAGAGAGTTCCAAACATTGTCATAGATCGAATAAATCCATTCACTGCATGTGCATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR-3UTR TCA 90 bp | CATCTCCAGCAAGCAGGCAAAGAACAAGCTTCCTTCTTCCATGTCCTTAATAGAAGCATCTGCTGTGGTTaGGGCACTGGTGGGCTCTGG | + |
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Preference number: 2 (lower is better) Translates to: HLQQAGKEQASFFHVLNRSICCG*GTGGLW Trigger: CCAGAGCCCACCAGTGCCTCAACCACAGCAGATGCT...TCTATTAAGGACATGGAAGAAGGAAGCTTGTTCTTTGCCTGCTTGCTGGAGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR-3UTR CCA 90 bp | TGCCAGTTCAGGAACAGACTTGCCATCTCCAGCAAGCAGGCAAAGAACAAGCTTGTGCACCCAGCTGCTTaGGCTAAGAACCAAGAACAG | + |
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Preference number: 2 (lower is better) Translates to: CQFRNRLAISSKQAKNKLVHPAA*AKNQEQ Trigger: CTGTTCTTGGTTCTTAGCCCAAGCAGCTGGGTGCAC...AAGCTTGTTCTTTGCCTGCTTGCTGGAGATGGCAAGTCTGTTCCTGAACTGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR-3UTR CCA 90 bp | CATCTCCAGCAAGCAGGCAAAGAACAAGCTTCCTTCTTCCATGTCCTTAATAGAGTCTTAGCTGTGTCCTaGAGCCCTCTATTCGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: HLQQAGKEQASFFHVLNRVLAVS*SPLFAR Trigger: CCTGGCGAATAGAGGGCTCCAGGACACAGCTAAGAC...TCTATTAAGGACATGGAAGAAGGAAGCTTGTTCTTTGCCTGCTTGCTGGAGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR-3UTR TCA 90 bp | TGCCAGTTCAGGAACAGACTTGCCATCTCCAGCAAGCAGGCAAAGAACAAGCTTAGCTCTCTTCTGATTTaGGCGGGTGACTCACTAAAA | + |
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Preference number: 2 (lower is better) Translates to: CQFRNRLAISSKQAKNKLSSLLI*AGDSLK Trigger: TTTTAGTGAGTCACCCGCTCAAATCAGAAGAGAGCT...AAGCTTGTTCTTTGCCTGCTTGCTGGAGATGGCAAGTCTGTTCCTGAACTGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR-3UTR CCA 90 bp | AGTGATATAGGCCCCTTGGTCTTGCAAACTTTATATGCCTCAGTACAAGGGAACGGCACTGGTGGGCTCTaGAGGTATAAAACTGTCAGA | + |
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Preference number: 2 (lower is better) Translates to: SDIGPLVLQTLYASVQGNGTGGL*RYKTVR Trigger: TCTGACAGTTTTATACCTCCAGAGCCCACCAGTGCC...GTTCCCTTGTACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTATATCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR-3UTR GCA 90 bp | TGCCAGTTCAGGAACAGACTTGCCATCTCCAGCAAGCAGGCAAAGAACAAGCTTCTTGCAAACTTTATATaGCTCAGTACAAGGGAACAC | + |
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Preference number: 2 (lower is better) Translates to: CQFRNRLAISSKQAKNKLLANFI*LSTREH Trigger: GTGTTCCCTTGTACTGAGGCATATAAAGTTTGCAAG...AAGCTTGTTCTTTGCCTGCTTGCTGGAGATGGCAAGTCTGTTCCTGAACTGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR-3UTR CCA 90 bp | GGATTTATTCGATCTATGACAATGTTTGGAACTCTCTTTTGGATCCACAAAGCTAGGGCCAAGAATGGGTaGGTAGGGGAGTGTTGTGGG | + |
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Preference number: 2 (lower is better) Translates to: GFIRSMTMFGTLFWIHKARAKNG*VGECCG Trigger: CCCACAACACTCCCCTACCCACCCATTCTTGGCCCT...AGCTTTGTGGATCCAAAAGAGAGTTCCAAACATTGTCATAGATCGAATAAATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR-3UTR TCA 90 bp | CATCTCCAGCAAGCAGGCAAAGAACAAGCTTCCTTCTTCCATGTCCTTAATAGAAAAGCAAAGGGAACTTaGGACAACTTCTCCTGGAGA | + |
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Preference number: 2 (lower is better) Translates to: HLQQAGKEQASFFHVLNRKAKGT*DNFSWR Trigger: TCTCCAGGAGAAGTTGTCTCAAGTTCCCTTTGCTTT...TCTATTAAGGACATGGAAGAAGGAAGCTTGTTCTTTGCCTGCTTGCTGGAGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR-3UTR GCA 90 bp | GGATTTATTCGATCTATGACAATGTTTGGAACTCTCTTTTGGATCCACAAAGCTGAAAAAGCTAATTCCTaGGTGTGTGGATTCGAAAGA | + |
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Preference number: 2 (lower is better) Translates to: GFIRSMTMFGTLFWIHKAEKANS*VCGFER Trigger: TCTTTCGAATCCACACACGCAGGAATTAGCTTTTTC...AGCTTTGTGGATCCAAAAGAGAGTTCCAAACATTGTCATAGATCGAATAAATCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR CCA 72 bp | AAACCAAGGCCGTTGTCTTCAGGTAGGAGACAAGAGTaGATGGTATTGGTGCAGGGGTTGGCCTACGGACCT | + |
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Preference number: 3 (lower is better) Translates to: KPRPLSSGRRQE*MVLVQGLAYGP Trigger: AGGTCCGTAGGCCAACCCCTGCACCAATACCATCCACTCTTGTCTCCTACCTGAAGACAACGGCCTTGGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR GCA 72 bp | TCCTGGAGACACGACAGGAGGGAAAAAGCTAATTCCTaGGTGTGTGGATTCGAAAGATCGCTTCATGAGCCC | + |
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Preference number: 3 (lower is better) Translates to: SWRHDRREKANS*VCGFERSLHEP Trigger: GGGCTCATGAAGCGATCTTTCGAATCCACACACGCAGGAATTAGCTTTTTCCCTCCTGTCGTGTCTCCAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR CCA 72 bp | CACACACACACACTCGAACACAAACACATGGCTTACTaGAGTTCAATGGCTGGGGTTCAATGGCTGTCACCC | + |
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Preference number: 3 (lower is better) Translates to: HTHTLEHKHMAY*SSMAGVQWLSP Trigger: GGGTGACAGCCATTGAACCCCAGCCATTGAACTCCAGTAAGCCATGTGTTTGTGTTCGAGTGTGTGTGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR GCA 72 bp | GTAAGTAGGGCTCTAATGCCAGTTCAGGAACAGACTTaGCATCTCCAGCAAGCAGGCAAAGAACAAGCTTCC | + |
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Preference number: 3 (lower is better) Translates to: VSRALMPVQEQT*HLQQAGKEQAS Trigger: GGAAGCTTGTTCTTTGCCTGCTTGCTGGAGATGGCAAGTCTGTTCCTGAACTGGCATTAGAGCCCTACTTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR CCA 72 bp | CACATGGCTTACTGGAGTTCAATGGCTGGGGTTCAATaGCTGTCACCCAACGGAAGGTCCAATAATCCAGTA | + |
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Preference number: 3 (lower is better) Translates to: HMAYWSSMAGVQ*LSPNGRSNNPV Trigger: TACTGGATTATTGGACCTTCCGTTGGGTGACAGCCATTGAACCCCAGCCATTGAACTCCAGTAAGCCATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR-3UTR CAA 90 bp | TATAGGCCCCTTGGTCTTGCAAACTTTATATGCCTCAGTACAAGGGAACACCAGGAAAGCAAAGGGAACTaGAGACAACTTCTCCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: YRPLGLANFICLSTREHQESKGN*RQLLLE Trigger: CTCCAGGAGAAGTTGTCTCAAGTTCCCTTTGCTTTC...CTGGTGTTCCCTTGTACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR CCA 72 bp | TTCTTCCATGTCCTTAATAGAAGCTGCCAGCTGGCGTaGCCCAGATTAAAGGTGGGAAAGAACCAGATTAAA | + |
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Preference number: 3 (lower is better) Translates to: FFHVLNRSCQLA*PRLKVGKNQIK Trigger: TTTAATCTGGTTCTTTCCCACCTTTAATCTGGGCCACGCCAGCTGGCAGCTTCTATTAAGGACATGGAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR TCA 72 bp | ATGCAAGTGGCAAAGCTCTCTTCTGATTTGAGCGGGTaGCTCACTAAAAGAGACTTTAAAAGATCAAAGGGG | + |
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Preference number: 3 (lower is better) Translates to: MQVAKLSSDLSG*LTKRDFKRSKG Trigger: CCCCTTTGATCTTTTAAAGTCTCTTTTAGTGAGTCACCCGCTCAAATCAGAAGAGAGCTTTGCCACTTGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR TCA 72 bp | CAATCAGCTCCAATAACCCTTACCACAAAGCAGAATTaGGAAAGCAATCAGACCATCAAGAATCTTCACCAA | + |
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Preference number: 3 (lower is better) Translates to: QSAPITLTTKQN*ESNQTIKNLHQ Trigger: TTGGTGAAGATTCTTGATGGTCTGATTGCTTTCTCAATTCTGCTTTGTGGTAAGGGTTATTGGAGCTGATTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR GCA 72 bp | AACGTGTCTTCACATACATCAAATGGACAAGGCCTCTaGCACCCCCGCCTTAATATAAAAATTAATTCAATA | + |
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Preference number: 3 (lower is better) Translates to: NVSSHTSNGQGL*HPRLNIKINSI Trigger: TATTGAATTAATTTTTATATTAAGGCGGGGGTGGCAGAGGCCTTGTCCATTTGATGTATGTGAAGACACGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR CCA 72 bp | TGCAGTGAATGGATTTATTCGATCTATGACAATGTTTaGAACTCTCTTTTGGATCCACAAAGCTCCTGCAAT | + |
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Preference number: 3 (lower is better) Translates to: CSEWIYSIYDNV*NSLLDPQSSCN Trigger: ATTGCAGGAGCTTTGTGGATCCAAAAGAGAGTTCCAAACATTGTCATAGATCGAATAAATCCATTCACTGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR CAA 72 bp | GGTAGGAGACAAGAGTGGATGGTATTGGTGCAGGGGTaGGCCTACGGACCTCCCTATTTAGCTTCTACTACC | + |
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Preference number: 4 (lower is better) Translates to: GRRQEWMVLVQG*AYGPPYLASTT Trigger: GGTAGTAGAAGCTAAATAGGGAGGTCCGTAGGCCAACCCCTGCACCAATACCATCCACTCTTGTCTCCTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| CDS-3UTR GCA 90 bp | AAGAACTCCAAGAAGCTAAGTAGGGTGCAGCAAACTGCAAACAGATACCCACAGGTGTCCGGGTGCACCTaGTTCAGCACTTTGTACACA | + |
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Preference number: 4 (lower is better) Translates to: KNSKKLSRVQQTANRYPQVSGCT*FSTLYT Trigger: TGTGTACAAAGTGCTGAAGCAGGTGCACCCGGACAC...CTGTGGGTATCTGTTTGCAGTTTGCTGCACCCTACTTAGCTTCTTGGAGTTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR CAA 72 bp | GGTGGGCTCTGGAGGTATAAAACTGTCAGACCCAGCTaGATCAGCAACAGTGTAAATAAGAAAGCAAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: GGLWRYKTVRPS*ISNSVNKKAKG Trigger: TCCCTTTGCTTTCTTATTTACACTGTTGCTGATCAAGCTGGGTCTGACAGTTTTATACCTCCAGAGCCCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| 3UTR CAA 72 bp | GCAATCAGCTCCAATAACCCTTACCACAAAGCAGAATaGAGAAAGCAATCAGACCATCAAGAATCTTCACCA | + |
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Preference number: 4 (lower is better) Translates to: AISSNNPYHKAE*RKQSDHQESSP Trigger: TGGTGAAGATTCTTGATGGTCTGATTGCTTTCTCAATTCTGCTTTGTGGTAAGGGTTATTGGAGCTGATTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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| CDS-3UTR CAA 90 bp | CATCTCCAGCAAGCAGGCAAAGAACAAGCTTCCTTCTTCCATGTCCTTAATAGATTCTTGGAACCCTTCTaGGGAGCCGGGGCAGATTTG | + |
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Preference number: 5 (lower is better) Translates to: HLQQAGKEQASFFHVLNRFLEPF*GAGADL Trigger: CAAATCTGCCCCGGCTCCCAAGAAGGGTTCCAAGAA...TCTATTAAGGACATGGAAGAAGGAAGCTTGTTCTTTGCCTGCTTGCTGGAGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090781.8 |
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