Pregenerated sensors for H2AW (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078851Ensembl transcript IDs: ENSMUST00000108817.5
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTGGTCTCCCTTGAGCTCCCCAAGCGCCGCACAGGGATGCAGGAATaGACGGAAGGAGTCAGGAGAACTGGCCTGGCCAGTAACTGGCGA | + |
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Preference number: 1 (lower is better) Translates to: LVSLELPKRRTGMQE*TEGVRRTGLASNWR Trigger: TCGCCAGTTACTGGCCAGGCCAGTTCTCCTGACTCCTTCCGTGCATTCCTGCATCCCTGTGCGGCGCTTGGGGAGCTCAAGGGAGACCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR CCA 90 bp | CAGGAATGCACGGAAGGAGTCAGGAGAACTGGCCTGGCCAGTAACTaGCGACAGGCTCAGTGTACAGCGCTTTCTAATGAGGTTGTGGGT | + |
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Preference number: 1 (lower is better) Translates to: QECTEGVRRTGLASN*RQAQCTALSNEVVG Trigger: ACCCACAACCTCATTAGAAAGCGCTGTACACTGAGCCTGTCGCCAGTTACTGGCCAGGCCAGTTCTCCTGACTCCTTCCGTGCATTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR GCA 90 bp | CTGGAGGTCCAACCCTCTGGCTTTGTTTTACTGAGACCACCCATTTaGAGATGTATAATCTATACGCAGTCTATTGATCACTCTGTTAAG | + |
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Preference number: 1 (lower is better) Translates to: LEVQPSGFVLLRPPI*RCIIYTQSIDHSVK Trigger: CTTAACAGAGTGATCAATAGACTGCGTATAGATTATACATCTGCAAATGGGTGGTCTCAGTAAAACAAAGCCAGAGGGTTGGACCTCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR CCA 90 bp | TGGATCATGGAGTGCTTGAATCCAGTGAACATTCTCTTTTCACATTaGTACTTCCCATCTGGAAATGATAATCCAGATGACCAGATCCTA | + |
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Preference number: 1 (lower is better) Translates to: WIMECLNPVNILFSH*YFPSGNDNPDDQIL Trigger: TAGGATCTGGTCATCTGGATTATCATTTCCAGATGGGAAGTACCAATGTGAAAAGAGAATGTTCACTGGATTCAAGCACTCCATGATCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR TCA 90 bp | TTCCTAAAAAGTTTAACCTCCACTCAAGCGTTTGAGCAGCTACAATaGCCTATGAACACATACAAACTAAAACTAGAACTAGAGATTCTA | + |
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Preference number: 1 (lower is better) Translates to: FLKSLTSTQAFEQLQ*PMNTYKLKLELEIL Trigger: TAGAATCTCTAGTTCTAGTTTTAGTTTGTATGTGTTCATAGGTCATTGTAGCTGCTCAAACGCTTGAGTGGAGGTTAAACTTTTTAGGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR-3UTR TCA 90 bp | CACGCTCCTGATTTACCTGTAACTCAACCATTCGTCATGCTGCTTAAAGAAGTCCTGCAACCTTGTGTCTaGCACGGAGTGGTGGGGAGA | + |
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Preference number: 2 (lower is better) Translates to: HAPDLPVTQPFVMLLKEVLQPCV*HGVVGR Trigger: TCTCCCCACCACTCCGTGTCAGACACAAGGTTGCAG...GACTTCTTTAAGCAGCATGACGAATGGTTGAGTTACAGGTAAATCAGGAGCGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR-3UTR TCA 90 bp | GAGCAGCTCTGTAGTTACAGACGGTGTCTGAGGAGCCCAGGCTTGAACAGATCCCCTAACTGGAAGACTTaGACATGTCAATTTAACCCA | + |
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Preference number: 2 (lower is better) Translates to: EQLCSYRRCLRSPGLNRSPNWKT*TCQFNP Trigger: TGGGTTAAATTGACATGTTCAAGTCTTCCAGTTAGG...GGATCTGTTCAAGCCTGGGCTCCTCAGACACCGTCTGTAACTACAGAGCTGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR-3UTR CCA 90 bp | CATTTGACAGCAGCCTTAGAAGAGATGAGAAACTACCCTAGTACACCTCCCTCCGGAGGTCCAACCCTCTaGCTTTGTTTTACTGAGACC | + |
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Preference number: 2 (lower is better) Translates to: HLTAALEEMRNYPSTPPSGGPTL*LCFTET Trigger: GGTCTCAGTAAAACAAAGCCAGAGGGTTGGACCTCC...GGAGGGAGGTGTACTAGGGTAGTTTCTCATCTCTTCTAAGGCTGCTGTCAAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR-3UTR GCA 90 bp | GAGCAGCTCTGTAGTTACAGACGGTGTCTGAGGAGCCCAGGCTTGAACAGATCCAGAGGCCCAATTCTGTaGCATTTAAAACGATTTAAA | + |
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Preference number: 2 (lower is better) Translates to: EQLCSYRRCLRSPGLNRSRGPIL*HLKRFK Trigger: TTTAAATCGTTTTAAATGGCACAGAATTGGGCCTCT...GGATCTGTTCAAGCCTGGGCTCCTCAGACACCGTCTGTAACTACAGAGCTGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR-3UTR CCA 90 bp | CACAAAGGAAACCAGCAAAACTCCAAAGTTGTAAATCGCCTTGTAACAGAACATGGCCTGGCCAGTAACTaGCGACAGGCTCAGTGTACA | + |
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Preference number: 2 (lower is better) Translates to: HKGNQQNSKVVNRLVTEHGLASN*RQAQCT Trigger: TGTACACTGAGCCTGTCGCCAGTTACTGGCCAGGCC...ATGTTCTGTTACAAGGCGATTTACAACTTTGGAGTTTTGCTGGTTTCCTTTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR-3UTR GCA 90 bp | CACGCTCCTGATTTACCTGTAACTCAACCATTCGTCATGCTGCTTAAAGAAGTCAACACGAACGTTAACTaGAACCTTGTGTCTGACACG | + |
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Preference number: 2 (lower is better) Translates to: HAPDLPVTQPFVMLLKEVNTNVN*NLVSDT Trigger: CGTGTCAGACACAAGGTTGCAGTTAACGTTCGTGTT...GACTTCTTTAAGCAGCATGACGAATGGTTGAGTTACAGGTAAATCAGGAGCGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR-3UTR GCA 90 bp | CATTTGACAGCAGCCTTAGAAGAGATGAGAAACTACCCTAGTACACCTCCCTCCAACCATTCGTCATGCTaGTTAAAGAAGTCACAATCA | + |
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Preference number: 2 (lower is better) Translates to: HLTAALEEMRNYPSTPPSNHSSC*LKKSQS Trigger: TGATTGTGACTTCTTTAAGCAGCATGACGAATGGTT...GGAGGGAGGTGTACTAGGGTAGTTTCTCATCTCTTCTAAGGCTGCTGTCAAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR CCA 72 bp | TGCAGGAATGCACGGAAGGAGTCAGGAGAACTGGCCTaGCCAGTAACTGGCGACAGGCTCAGTGTACAGCGC | + |
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Preference number: 3 (lower is better) Translates to: CRNARKESGELA*PVTGDRLSVQR Trigger: GCGCTGTACACTGAGCCTGTCGCCAGTTACTGGCCAGGCCAGTTCTCCTGACTCCTTCCGTGCATTCCTGCA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR CCA 72 bp | ACGGAAGGAGTCAGGAGAACTGGCCTGGCCAGTAACTaGCGACAGGCTCAGTGTACAGCGCTTTCTAATGAG | + |
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Preference number: 3 (lower is better) Translates to: TEGVRRTGLASN*RQAQCTALSNE Trigger: CTCATTAGAAAGCGCTGTACACTGAGCCTGTCGCCAGTTACTGGCCAGGCCAGTTCTCCTGACTCCTTCCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR-3UTR CAA 90 bp | CCCCCACAAAGGAAACCAGCAAAACTCCAAAGTTGTAAATCGCCTTGTAACAGAAGCCGTTGGTCTCCCTaGAGCTCCCCAAGCGCCGCA | + |
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Preference number: 3 (lower is better) Translates to: PPQRKPAKLQSCKSPCNRSRWSP*SSPSAA Trigger: TGCGGCGCTTGGGGAGCTCAAGGGAGACCAACGGCT...TCTGTTACAAGGCGATTTACAACTTTGGAGTTTTGCTGGTTTCCTTTGTGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR TCA 72 bp | TTTAACCCCCTCCTCTCCCTTTCCCAACCACGCTCCTaGTTTACCTGTAACTCAACCATTCGTCATGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: FNPLLSLSQPRS*FTCNSTIRHAA Trigger: AGCAGCATGACGAATGGTTGAGTTACAGGTAAATCAGGAGCGTGGTTGGGAAAGGGAGAGGAGGGGGTTAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR-3UTR CAA 90 bp | CACAAAGGAAACCAGCAAAACTCCAAAGTTGTAAATCGCCTTGTAACAGAACATCCGCAGATGAAGCCGTaGGTCTCCCTTGAGCTCCCC | + |
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Preference number: 3 (lower is better) Translates to: HKGNQQNSKVVNRLVTEHPQMKP*VSLELP Trigger: GGGGAGCTCAAGGGAGACCAACGGCTTCATCTGCGG...ATGTTCTGTTACAAGGCGATTTACAACTTTGGAGTTTTGCTGGTTTCCTTTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR TCA 72 bp | CACTGCTGTACTCTCACACCTAGTTTAACCAGAACCTaGCAAATCACTTTGCTCCCCAAGGTTAAGCTACTT | + |
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Preference number: 3 (lower is better) Translates to: HCCTLTPSLTRT*QITLLPKVKLL Trigger: AAGTAGCTTAACCTTGGGGAGCAAAGTGATTTGTCAGGTTCTGGTTAAACTAGGTGTGAGAGTACAGCAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR TCA 72 bp | AGTTTAACCTCCACTCAAGCGTTTGAGCAGCTACAATaGCCTATGAACACATACAAACTAAAACTAGAACTA | + |
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Preference number: 3 (lower is better) Translates to: SLTSTQAFEQLQ*PMNTYKLKLEL Trigger: TAGTTCTAGTTTTAGTTTGTATGTGTTCATAGGTCATTGTAGCTGCTCAAACGCTTGAGTGGAGGTTAAACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR CCA 72 bp | AAATTGCTTATCCTTAGACAAATGGCTTTAAGACGTTaGTATTTTATGAGCAGCTCTGTAGTTACAGACGGT | + |
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Preference number: 3 (lower is better) Translates to: KLLILRQMALRR*YFMSSSVVTDG Trigger: ACCGTCTGTAACTACAGAGCTGCTCATAAAATACCAACGTCTTAAAGCCATTTGTCTAAGGATAAGCAATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR CAA 72 bp | CTCCAACGGCCCGCAGGCCACCCGCAGATGAAGCCGTaGGTCTCCCTTGAGCTCCCCAAGCGCCGCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: LQRPAGHPQMKP*VSLELPKRRTG Trigger: CCCTGTGCGGCGCTTGGGGAGCTCAAGGGAGACCAACGGCTTCATCTGCGGGTGGCCTGCGGGCCGTTGGAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| CDS-3UTR GCA 90 bp | CACAAAGGAAACCAGCAAAACTCCAAAGTTGTAAATCGCCTTGTAACAGAACATCGGCCCACTGGAAACTaGAGGCCGGCACGGGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: HKGNQQNSKVVNRLVTEHRPTGN*RPAREE Trigger: TTCTTCCCGTGCCGGCCTGCAGTTTCCAGTGGGCCG...ATGTTCTGTTACAAGGCGATTTACAACTTTGGAGTTTTGCTGGTTTCCTTTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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| 3UTR CAA 72 bp | GAAATTAAATATTCCTTTTGGGTAGTGGTTGTGCATTaGACAGCAGCCTTAGAAGAGATGAGAAACTACCCT | + |
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Preference number: 4 (lower is better) Translates to: EIKYSFWVVVVH*TAALEEMRNYP Trigger: AGGGTAGTTTCTCATCTCTTCTAAGGCTGCTGTCAAATGCACAACCACTACCCAAAAGGAATATTTAATTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108817.5 |
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