Pregenerated sensors for H2AP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040456Ensembl transcript IDs: ENSMUST00000044987.3
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTAAACATTTTATTAGTAGTCATGGACACCAGGGGAGCCTCCTCTGCTATTAGCCTTCATGGTTCTAGCTaGGTCTGTGAGGCTTTCCAC | + |
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Preference number: 2 (lower is better) Translates to: LNILLVVMDTRGASSAISLHGSS*VCEAFH Trigger: GTGGAAAGCCTCACAGACTCAGCTAGAACCATGAAG...GCTAATAGCAGAGGAGGCTCCCCTGGTGTCCATGACTACTAATAAAATGTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| 3UTR TCA 72 bp | GGAGCCTCCTCTGCTATTAGCCTTCATGGTTCTAGCTaGGTCTGTGAGGCTTTCCACCCTTGGGTTGTGTAC | + |
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Preference number: 3 (lower is better) Translates to: GASSAISLHGSS*VCEAFHPWVVY Trigger: GTACACAACCCAAGGGTGGAAAGCCTCACAGACTCAGCTAGAACCATGAAGGCTAATAGCAGAGGAGGCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS-3UTR TCA 90 bp | ATGGTTCTAGCTGAGTCTGTGAGGCTTTCCACCCTTGGGTTGTGTACCCCATTCTCTCTCTCTATCTTGTaGGATATTTTGCTGGTTGTT | + |
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Preference number: 4 (lower is better) Translates to: MVLAESVRLSTLGLCTPFSLSIL*DILLVV Trigger: AACAACCAGCAAAATATCTCACAAGATAGAGAGAGA...GAATGGGGTACACAACCCAAGGGTGGAAAGCCTCACAGACTCAGCTAGAACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS-3UTR GCA 90 bp | TCATTTAAACATTTTATTAGTAGTCATGGACACCAGGGGAGCCTCCTCTGCTATTCTGGTTGTTGTCGCTaGAAGGCTTTTCTTGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: SFKHFISSHGHQGSLLCYSGCCR*KAFLGS Trigger: AGAGCCAAGAAAAGCCTTGCAGCGACAACAACCAGA...ATAGCAGAGGAGGCTCCCCTGGTGTCCATGACTACTAATAAAATGTTTAAATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS-3UTR CCA 90 bp | ATTTTATTAGTAGTCATGGACACCAGGGGAGCCTCCTCTGCTATTAGCCTTCATTGTGAGATATTTTGCTaGTTGTTGATGTTGGCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: ILLVVMDTRGASSAISLHCEIFC*LLMLAS Trigger: CGAAGCCAACATCAACAACCAGCAAAATATCTCACA...ATGAAGGCTAATAGCAGAGGAGGCTCCCCTGGTGTCCATGACTACTAATAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS GCA 90 bp | TCGCGGTCGTTGTCTCTCTGTCTCTCTCTATCTTGTGAGATATTTTaGTGGTTGTTGATGTTGGCTTCGGAGCCCACCACCTCCAGGATG | + |
|
Preference number: 5 (lower is better) Translates to: SRSLSLCLSLSCEIF*WLLMLASEPTTSRM Trigger: CATCCTGGAGGTGGTGGGCTCCGAAGCCAACATCAACAACCAGCAAAATATCTCACAAGATAGAGAGAGACAGAGAGACAACGACCGCGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS-3UTR CAA 90 bp | ACACCAGGGGAGCCTCCTCTGCTATTAGCCTTCATGGTTCTAGCTGAGTCTGTGGAGATATTTTGCTGGTaGTTGATGTTGGCTTCGGAG | + |
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Preference number: 5 (lower is better) Translates to: TPGEPPLLLAFMVLAESVEIFCW*LMLASE Trigger: CTCCGAAGCCAACATCAACAACCAGCAAAATATCTC...CACAGACTCAGCTAGAACCATGAAGGCTAATAGCAGAGGAGGCTCCCCTGGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS-3UTR CAA 90 bp | TCATTTAAACATTTTATTAGTAGTCATGGACACCAGGGGAGCCTCCTCTGCTATATATTTTGCTGGTTGTaGATGTTGGCTTCGGAGCCC | + |
|
Preference number: 5 (lower is better) Translates to: SFKHFISSHGHQGSLLCYIFCWL*MLASEP Trigger: GGGCTCCGAAGCCAACATCAACAACCAGCAAAATAT...ATAGCAGAGGAGGCTCCCCTGGTGTCCATGACTACTAATAAAATGTTTAAATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS CAA 72 bp | CCAGGCATCTCGTCAAACAGAGAGAAAGGCGCATTCTaGAAGCCTCGAGAGGGTTCGCGGTCGTTGTCTCTC | + |
|
Preference number: 6 (lower is better) Translates to: PGISSNREKGAF*KPREGSRSLSL Trigger: GAGAGACAACGACCGCGAACCCTCTCGAGGCTTCAAGAATGCGCCTTTCTCTCTGTTTGACGAGATGCCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS TCA 72 bp | TGGCTTCGGAGCCCACCACCTCCAGGATGTAGTCGGTaGGGTAATCAAGCATGGCAAGAAGGAAATCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: WLRSPPPPGCSR*GNQAWQEGNLK Trigger: CTTCAGATTTCCTTCTTGCCATGCTTGATTACCTCACCGACTACATCCTGGAGGTGGTGGGCTCCGAAGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS CAA 72 bp | CTCTGTCTCTCTCTATCTTGTGAGATATTTTGCTGGTaGTTGATGTTGGCTTCGGAGCCCACCACCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: LCLSLSCEIFCW*LMLASEPTTSR Trigger: CCTGGAGGTGGTGGGCTCCGAAGCCAACATCAACAACCAGCAAAATATCTCACAAGATAGAGAGAGACAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS CAA 72 bp | GGCGCATTCTTGAAGCCTCGAGAGGGTTCGCGGTCGTaGTCTCTCTGTCTCTCTCTATCTTGTGAGATATTT | + |
|
Preference number: 6 (lower is better) Translates to: GAFLKPREGSRS*SLCLSLSCEIF Trigger: AAATATCTCACAAGATAGAGAGAGACAGAGAGACAACGACCGCGAACCCTCTCGAGGCTTCAAGAATGCGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS TCA 72 bp | GTCTCTCTCTATCTTGTGAGATATTTTGCTGGTTGTTaGTGTTGGCTTCGGAGCCCACCACCTCCAGGATGT | + |
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Preference number: 6 (lower is better) Translates to: VSLYLVRYFAGC*CWLRSPPPPGC Trigger: ACATCCTGGAGGTGGTGGGCTCCGAAGCCAACATCAACAACCAGCAAAATATCTCACAAGATAGAGAGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS CCA 72 bp | GGTAATCAAGCATGGCAAGAAGGAAATCTGAAGTTGTaGACCCTATGCAGGGGGTATATTGCTCCTCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: GNQAWQEGNLKL*TLCRGYIAPPA Trigger: TGCAGGAGGAGCAATATACCCCCTGCATAGGGTCCACAACTTCAGATTTCCTTCTTGCCATGCTTGATTACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS CCA 72 bp | TCTCTCTGTCTCTCTCTATCTTGTGAGATATTTTGCTaGTTGTTGATGTTGGCTTCGGAGCCCACCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: SLCLSLSCEIFC*LLMLASEPTTS Trigger: GGAGGTGGTGGGCTCCGAAGCCAACATCAACAACCAGCAAAATATCTCACAAGATAGAGAGAGACAGAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS CAA 72 bp | ACCTCAGGCCTAGAAGAAGGATCTTCTATCTGGTTGTaGTCGCTGCAAGGCTTTTCTTGGCTCTTCTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: TSGLEEGSSIWL*SLQGFSWLFFS Trigger: GGAGAAGAAGAGCCAAGAAAAGCCTTGCAGCGACAACAACCAGATAGAAGATCCTTCTTCTAGGCCTGAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS CAA 72 bp | TGTCTCTCTCTATCTTGTGAGATATTTTGCTGGTTGTaGATGTTGGCTTCGGAGCCCACCACCTCCAGGATG | + |
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Preference number: 6 (lower is better) Translates to: CLSLSCEIFCWL*MLASEPTTSRM Trigger: CATCCTGGAGGTGGTGGGCTCCGAAGCCAACATCAACAACCAGCAAAATATCTCACAAGATAGAGAGAGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS GCA 72 bp | TTGTCTCTCTGTCTCTCTCTATCTTGTGAGATATTTTaGTGGTTGTTGATGTTGGCTTCGGAGCCCACCACC | + |
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Preference number: 6 (lower is better) Translates to: LSLCLSLSCEIF*WLLMLASEPTT Trigger: GGTGGTGGGCTCCGAAGCCAACATCAACAACCAGCAAAATATCTCACAAGATAGAGAGAGACAGAGAGACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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| CDS TCA 72 bp | TTCGCGGTCGTTGTCTCTCTGTCTCTCTCTATCTTGTaGGATATTTTGCTGGTTGTTGATGTTGGCTTCGGA | + |
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Preference number: 6 (lower is better) Translates to: FAVVVSLSLSIL*DILLVVDVGFG Trigger: TCCGAAGCCAACATCAACAACCAGCAAAATATCTCACAAGATAGAGAGAGACAGAGAGACAACGACCGCGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044987.3 |
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