Pregenerated sensors for H2AL3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048994Ensembl transcript IDs: ENSMUST00000057113.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | CCCCCTCCACCAACAAGGGAGTCATTGAGGTTGATCTaGGACTTTAAGATGGATGCCCAGCCTCCAAGATGC | + |
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Preference number: 3 (lower is better) Translates to: PPPPTRESLRLI*DFKMDAQPPRC Trigger: GCATCTTGGAGGCTGGGCATCCATCTTAAAGTCTCAGATCAACCTCAATGACTCCCTTGTTGGTGGAGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057113.3 |
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| CDS CCA 90 bp | ACCGGGTCTTGGTGCCTCATAGAGTCCTGTTATCTTATTGGATCTTaGTGTCTTGTAGCATCCTGGAGTCTCATCAGCCATATACTGGCT | + |
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Preference number: 5 (lower is better) Translates to: TGSWCLIESCYLIGS*CLVASWSLISHILA Trigger: AGCCAGTATATGGCTGATGAGACTCCAGGATGCTACAAGACACCAAGATCCAATAAGATAACAGGACTCTATGAGGCACCAAGACCCGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057113.3 |
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| CDS CAA 72 bp | GTTGGCTTGGACTTCTGCTCTGGGGCAATGAGTTTGTaGCAGCTGGTGTGGCTGTCTCTGTCCTTGACAGTC | + |
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Preference number: 6 (lower is better) Translates to: VGLDFCSGAMSL*QLVWLSLSLTV Trigger: GACTGTCAAGGACAGAGACAGCCACACCAGCTGCAACAAACTCATTGCCCCAGAGCAGAAGTCCAAGCCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057113.3 |
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| CDS CAA 72 bp | TCAGTTGGCTTGGACTTCTGCTCTGGGGCAATGAGTTaGTTGCAGCTGGTGTGGCTGTCTCTGTCCTTGACA | + |
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Preference number: 6 (lower is better) Translates to: SVGLDFCSGAMS*LQLVWLSLSLT Trigger: TGTCAAGGACAGAGACAGCCACACCAGCTGCAACAAACTCATTGCCCCAGAGCAGAAGTCCAAGCCAACTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057113.3 |
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| CDS TCA 72 bp | TTCTGCTTCGCTAACAGGGAACTGCAGCTTTGCCCCTaGAGAGGGAGCAACGCTATCCTTCTGTCTTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: FCFANRELQLCP*RGSNAILLSFV Trigger: GACAAAAGACAGAAGGATAGCGTTGCTCCCTCTTCAGGGGCAAAGCTGCAGTTCCCTGTTAGCGAAGCAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057113.3 |
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| CDS GCA 72 bp | CAGAGTTCATCGATGTTATCAGTTGGCTTGGACTTCTaGTCTGGGGCAATGAGTTTGTTGCAGCTGGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: QSSSMLSVGLDF*SGAMSLLQLVW Trigger: CCACACCAGCTGCAACAAACTCATTGCCCCAGAGCAGAAGTCCAAGCCAACTGATAACATCGATGAACTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057113.3 |
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| CDS CAA 90 bp | CAAAACAGGCGTAGAAGAGTTCAGGCATTTGGACAGGTTTCTTTCTaGAAGAAGGTGTTCTGCTTCGCTAACAGGGAACTGCAGCTTTGC | + |
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Preference number: 6 (lower is better) Translates to: QNRRRRVQAFGQVSF*KKVFCFANRELQLC Trigger: GCAAAGCTGCAGTTCCCTGTTAGCGAAGCAGAACACCTTCTTCAAGAAAGAAACCTGTCCAAATGCCTGAACTCTTCTACGCCTGTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057113.3 |
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| CDS CCA 72 bp | CGGGTCTTGGTGCCTCATAGAGTCCTGTTATCTTATTaGATCTTGGTGTCTTGTAGCATCCTGGAGTCTCAT | + |
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Preference number: 6 (lower is better) Translates to: RVLVPHRVLLSY*ILVSCSILESH Trigger: ATGAGACTCCAGGATGCTACAAGACACCAAGATCCAATAAGATAACAGGACTCTATGAGGCACCAAGACCCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057113.3 |
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| CDS CCA 72 bp | TGGTGCCTCATAGAGTCCTGTTATCTTATTGGATCTTaGTGTCTTGTAGCATCCTGGAGTCTCATCAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: WCLIESCYLIGS*CLVASWSLISH Trigger: ATGGCTGATGAGACTCCAGGATGCTACAAGACACCAAGATCCAATAAGATAACAGGACTCTATGAGGCACCA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057113.3 |
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| CDS CAA 72 bp | TTGGTGCCTCATAGAGTCCTGTTATCTTATTGGATCTaGGTGTCTTGTAGCATCCTGGAGTCTCATCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: LVPHRVLLSYWI*VSCSILESHQP Trigger: TGGCTGATGAGACTCCAGGATGCTACAAGACACCAAGATCCAATAAGATAACAGGACTCTATGAGGCACCAA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057113.3 |
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