Pregenerated sensors for H2AL2C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094881

Ensembl transcript IDs: ENSMUST00000163651.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GCTGTTCCTTGTTCTGTACCACCTGACACACATGCTCAGGAGCTATaGGCTTCATGCCACTGGTGTGGGTTACCTCACCAGCCAGTCCAA	+
Preference number: 5 (lower is better) Translates to: AVPCSVPPDTHAQEL*ASCHWCGLPHQPVQ Trigger: TTGGACTGGCTGGTGAGGTAACCCACACCAGTGGCATGAAGCGCATAGCTCCTGAGCATGTGTGTCAGGTGGTACAGAACAAGGAACAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163651.2
CDS CCA 72 bp	GACACACATGCTCAGGAGCTATGCGCTTCATGCCACTaGTGTGGGTTACCTCACCAGCCAGTCCAAGGATGT	+
Preference number: 6 (lower is better) Translates to: DTHAQELCASCH*CGLPHQPVQGC Trigger: ACATCCTTGGACTGGCTGGTGAGGTAACCCACACCAGTGGCATGAAGCGCATAGCTCCTGAGCATGTGTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163651.2
CDS CAA 72 bp	CTGGTGTGGGTTACCTCACCAGCCAGTCCAAGGATGTaGGGTGTTAAGTACTCGAGCACACCCACAAGGAAT	+
Preference number: 6 (lower is better) Translates to: LVWVTSPASPRM*GVKYSSTPTRN Trigger: ATTCCTTGTGGGTGTGCTCGAGTACTTAACACCCAACATCCTTGGACTGGCTGGTGAGGTAACCCACACCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163651.2
CDS CAA 72 bp	CTCTCCAAGGAAACGATCTACACGGCTAACAGGAAATaGAAGCTCAGCTCTCTGGGAGTGGGTTATTTTCCA	+
Preference number: 6 (lower is better) Translates to: LSKETIYTANRK*KLSSLGVGYFP Trigger: TGGAAAATAACCCACTCCCAGAGAGCTGAGCTTCAATTTCCTGTTAGCCGTGTAGATCGTTTCCTTGGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163651.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu