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Pregenerated sensors for H2AL1O (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061065

Ensembl transcript IDs: ENSMUST00000079952.4

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp CCCCCAGCTAGTAGGACACTGGGGCAGGGTGAGGCCGAAGGTGCGGTGAACCTCGGAAGCTCACCTCTCTaGGAGCAGGTTCTTTTCTGT +
Preference number: 4 (lower is better)
Translates to: PPASRTLGQGEAEGAVNLGSSPL*EQVLFC
Trigger: ACAGAAAAGAACCTGCTCCCAGAGAGGTGAGCTTCC...GAGGTTCACCGCACCTTCGGCCTCACCCTGCCCCAGTGTCCTACTAGCTGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000079952.4
CDS-3UTR TCA 90 bp CCCCCAGCTAGTAGGACACTGGGGCAGGGTGAGGCCGAAGGTGCGGTGAACCTCTCCTCTCGTAGGAAATaGTCTACAAGGCTAAGAGGA +
Preference number: 4 (lower is better)
Translates to: PPASRTLGQGEAEGAVNLSSRRK*STRLRG
Trigger: TCCTCTTAGCCTTGTAGATCATTTCCTACGAGAGGA...GAGGTTCACCGCACCTTCGGCCTCACCCTGCCCCAGTGTCCTACTAGCTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079952.4
CDS-3UTR GCA 90 bp AATAGCATATTTGATTTGCTCCCCCAGCTAGTAGGACACTGGGGCAGGGTGAGGCATCCTCTGGAGCTATaGGCTTCCTGCCAGTGGTGT +
Preference number: 4 (lower is better)
Translates to: NSIFDLLPQLVGHWGRVRHPLEL*ASCQWC
Trigger: ACACCACTGGCAGGAAGCGCATAGCTCCAGAGGATG...CCTCACCCTGCCCCAGTGTCCTACTAGCTGGGGGAGCAAATCAAATATGCTATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079952.4
CDS-3UTR TCA 90 bp AATAGCATATTTGATTTGCTCCCCCAGCTAGTAGGACACTGGGGCAGGGTGAGGACTCGAGCACACTCGTaGGGAATGAAAGTGTGGAAG +
Preference number: 4 (lower is better)
Translates to: NSIFDLLPQLVGHWGRVRTRAHS*GMKVWK
Trigger: CTTCCACACTTTCATTCCTCACGAGTGTGCTCGAGT...CCTCACCCTGCCCCAGTGTCCTACTAGCTGGGGGAGCAAATCAAATATGCTATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079952.4
CDS-3UTR TCA 90 bp AATAGCATATTTGATTTGCTCCCCCAGCTAGTAGGACACTGGGGCAGGGTGAGGATGTGCCACCTGGTTTaGAGAGTTGGTGGAGCTGTT +
Preference number: 4 (lower is better)
Translates to: NSIFDLLPQLVGHWGRVRMCHLV*RVGGAV
Trigger: AACAGCTCCACCAACTCTTCAAACCAGGTGGCACAT...CCTCACCCTGCCCCAGTGTCCTACTAGCTGGGGGAGCAAATCAAATATGCTATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079952.4
CDS TCA 90 bp GTGGAAGAGCTCAGGCGACTGGAATGGATTTCCTCTCGTAGGAAATaGTCTACAAGGCTAAGAGGAAGCTCACCTCTCTGGGAGCAGGTT +
Preference number: 5 (lower is better)
Translates to: VEELRRLEWISSRRK*STRLRGSSPLWEQV
Trigger: AACCTGCTCCCAGAGAGGTGAGCTTCCTCTTAGCCTTGTAGATCATTTCCTACGAGAGGAAATCCATTCCAGTCGCCTGAGCTCTTCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079952.4
CDS GCA 72 bp CCACCAGACGTACATCCTCTGGAGCTATGCGCTTCCTaGCAGTGGTGTGGGCCACCTCACCAGCCAGTTCAA +
Preference number: 6 (lower is better)
Translates to: PPDVHPLELCAS*QWCGPPHQPVQ
Trigger: TTGAACTGGCTGGTGAGGTGGCCCACACCACTGGCAGGAAGCGCATAGCTCCAGAGGATGTACGTCTGGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079952.4
CDS CAA 72 bp GTGCCACCTGGTTTGAAGAGTTGGTGGAGCTGTTCGTaGTTCTGTACCACCAGACGTACATCCTCTGGAGCT +
Preference number: 6 (lower is better)
Translates to: VPPGLKSWWSCS*FCTTRRTSSGA
Trigger: AGCTCCAGAGGATGTACGTCTGGTGGTACAGAACAACGAACAGCTCCACCAACTCTTCAAACCAGGTGGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079952.4
CDS CCA 72 bp GGCTCATTCACTGATGTGCCACCTGGTTTGAAGAGTTaGTGGAGCTGTTCGTTGTTCTGTACCACCAGACGT +
Preference number: 6 (lower is better)
Translates to: GSFTDVPPGLKS*WSCSLFCTTRR
Trigger: ACGTCTGGTGGTACAGAACAACGAACAGCTCCACCAACTCTTCAAACCAGGTGGCACATCAGTGAATGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079952.4
CDS TCA 72 bp CTCAGGCGACTGGAATGGATTTCCTCTCGTAGGAAATaGTCTACAAGGCTAAGAGGAAGCTCACCTCTCTGG +
Preference number: 6 (lower is better)
Translates to: LRRLEWISSRRK*STRLRGSSPLW
Trigger: CCAGAGAGGTGAGCTTCCTCTTAGCCTTGTAGATCATTTCCTACGAGAGGAAATCCATTCCAGTCGCCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079952.4
CDS TCA 72 bp TCATCCGTTGTTATCAGGTTCTGGTGGCTCATTCACTaGTGTGCCACCTGGTTTGAAGAGTTGGTGGAGCTG +
Preference number: 6 (lower is better)
Translates to: SSVVIRFWWLIH*CATWFEELVEL
Trigger: CAGCTCCACCAACTCTTCAAACCAGGTGGCACATCAGTGAATGAGCCACCAGAACCTGATAACAACGGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079952.4