Pregenerated sensors for H2AL1N (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078346

Ensembl transcript IDs: ENSMUST00000105137.4

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	CTTGATTTGCTCCCCCAGCTAATAGGACACTGGGGCAGGGTGAGGCTGAAGGTGCGTGAGGAATGGAAGTaGGGAAGAACTCAGGCGACT	+
Preference number: 4 (lower is better) Translates to: LDLLPQLIGHWGRVRLKVREEWK*GRTQAT Trigger: AGTCGCCTGAGTTCTTCCGCACTTCCATTCCTCACG...CACCTTCAGCCTCACCCTGCCCCAGTGTCCTATTAGCTGGGGGAGCAAATCAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105137.4
CDS-3UTR CCA 90 bp	ATGCTTGATTTGCTCCCCCAGCTAATAGGACACTGGGGCAGGGTGAGGCTGAAGGGAAGCTCACCTCTCTaGGAGCGGGCTCTTTTCTGT	+
Preference number: 4 (lower is better) Translates to: MLDLLPQLIGHWGRVRLKGSSPL*ERALFC Trigger: ACAGAAAAGAGCCCGCTCCCAGAGAGGTGAGCTTCC...CTTCAGCCTCACCCTGCCCCAGTGTCCTATTAGCTGGGGGAGCAAATCAAGCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000105137.4
CDS-3UTR CCA 90 bp	AGCATGCTTGATTTGCTCCCCCAGCTAATAGGACACTGGGGCAGGGTGAGGCTGCAGATGTACATCCTCTaGAGCTACGCACTTCCTGCC	+
Preference number: 4 (lower is better) Translates to: SMLDLLPQLIGHWGRVRLQMYIL*SYALPA Trigger: GGCAGGAAGTGCGTAGCTCCAGAGGATGTACATCTG...CAGCCTCACCCTGCCCCAGTGTCCTATTAGCTGGGGGAGCAAATCAAGCATGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105137.4
CDS-3UTR TCA 90 bp	AGCATGCTTGATTTGCTCCCCCAGCTAATAGGACACTGGGGCAGGGTGAGGCTGATGTGCCACCTGATTTaGAGAGTTGGCGGAGCTGTT	+
Preference number: 4 (lower is better) Translates to: SMLDLLPQLIGHWGRVRLMCHLI*RVGGAV Trigger: AACAGCTCCGCCAACTCTTCAAATCAGGTGGCACAT...CAGCCTCACCCTGCCCCAGTGTCCTATTAGCTGGGGGAGCAAATCAAGCATGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105137.4
CDS-3UTR CCA 90 bp	AGCATGCTTGATTTGCTCCCCCAGCTAATAGGACACTGGGGCAGGGTGAGGCTGCCTGATTTGAAGAGTTaGCGGAGCTGTTCGTTGTTC	+
Preference number: 4 (lower is better) Translates to: SMLDLLPQLIGHWGRVRLPDLKS*RSCSLF Trigger: GAACAACGAACAGCTCCGCCAACTCTTCAAATCAGG...CAGCCTCACCCTGCCCCAGTGTCCTATTAGCTGGGGGAGCAAATCAAGCATGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105137.4
CDS-3UTR CAA 90 bp	AGCATGCTTGATTTGCTCCCCCAGCTAATAGGACACTGGGGCAGGGTGAGGCTGGATGTGCCACCTGATTaGAAGAGTTGGCGGAGCTGT	+
Preference number: 5 (lower is better) Translates to: SMLDLLPQLIGHWGRVRLDVPPD*KSWRSC Trigger: ACAGCTCCGCCAACTCTTCAAATCAGGTGGCACATC...CAGCCTCACCCTGCCCCAGTGTCCTATTAGCTGGGGGAGCAAATCAAGCATGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105137.4
CDS GCA 72 bp	CCACCAGATGTACATCCTCTGGAGCTACGCACTTCCTaGCAGTGGTGTGGGCCACCTCACCAGCCAGTTCGA	+
Preference number: 6 (lower is better) Translates to: PPDVHPLELRTS*QWCGPPHQPVR Trigger: TCGAACTGGCTGGTGAGGTGGCCCACACCACTGGCAGGAAGTGCGTAGCTCCAGAGGATGTACATCTGGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105137.4
CDS CCA 72 bp	ACATCCTCTGGAGCTACGCACTTCCTGCCAGTGGTGTaGGCCACCTCACCAGCCAGTTCGAGGATGTTCGAT	+
Preference number: 6 (lower is better) Translates to: TSSGATHFLPVV*ATSPASSRMFD Trigger: ATCGAACATCCTCGAACTGGCTGGTGAGGTGGCCCACACCACTGGCAGGAAGTGCGTAGCTCCAGAGGATGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105137.4
CDS CCA 72 bp	GATGTACATCCTCTGGAGCTACGCACTTCCTGCCAGTaGTGTGGGCCACCTCACCAGCCAGTTCGAGGATGT	+
Preference number: 6 (lower is better) Translates to: DVHPLELRTSCQ*CGPPHQPVRGC Trigger: ACATCCTCGAACTGGCTGGTGAGGTGGCCCACACCACTGGCAGGAAGTGCGTAGCTCCAGAGGATGTACATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105137.4