Pregenerated sensors for H2AL1K (Mus musculus)

Ensembl gene IDs: ENSMUSG00000100448

Ensembl transcript IDs: ENSMUST00000178196.3

Found 2 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 72 bp	CCACCAGACGTACATCCTCTGGAGCTATGCGCTTCCTaGCAGTGGTGTGGGCCACCTCACCAGCCAGTTCGA	+
Preference number: 6 (lower is better) Translates to: PPDVHPLELCAS*QWCGPPHQPVR Trigger: TCGAACTGGCTGGTGAGGTGGCCCACACCACTGGCAGGAAGCGCATAGCTCCAGAGGATGTACGTCTGGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178196.3
CDS CCA 72 bp	AGGAATGAAAGTGCGGAAGAGCTCAGGCGACTGGAATaGAATTCCTCTCGTAGGAAACGATCTACAAGGCTA	+
Preference number: 6 (lower is better) Translates to: RNESAEELRRLE*NSSRRKRSTRL Trigger: TAGCCTTGTAGATCGTTTCCTACGAGAGGAATTCCATTCCAGTCGCCTGAGCTCTTCCGCACTTTCATTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178196.3

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu