Pregenerated sensors for H2AL1J (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069038Ensembl transcript IDs: ENSMUST00000091180.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CAA 72 bp | GTAGCACCTGGTTTGAAGAGTTGGCAGAGCTGTTCGTaGTTCTGTACCACCAAACCTACATCCTCTGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: VAPGLKSWQSCS*FCTTKPTSSGA Trigger: AGCTCCAGAGGATGTAGGTTTGGTGGTACAGAACAACGAACAGCTCTGCCAACTCTTCAAACCAGGTGCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091180.3 |
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| CDS CAA 90 bp | AACACTGATGTAGCACCTGGTTTGAAGAGTTGGCAGAGCTGTTCGTaGTTCTGTACCACCAAACCTACATCCTCTGGAGCTATGCGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: NTDVAPGLKSWQSCS*FCTTKPTSSGAMRF Trigger: GAAGCGCATAGCTCCAGAGGATGTAGGTTTGGTGGTACAGAACAACGAACAGCTCTGCCAACTCTTCAAACCAGGTGCTACATCAGTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091180.3 |
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| CDS CAA 72 bp | GGTTCTGGTGGATCAAACACTGATGTAGCACCTGGTTaGAAGAGTTGGCAGAGCTGTTCGTTGTTCTGTACC | + |
|
Preference number: 6 (lower is better) Translates to: GSGGSNTDVAPG*KSWQSCSLFCT Trigger: GGTACAGAACAACGAACAGCTCTGCCAACTCTTCAAACCAGGTGCTACATCAGTGTTTGATCCACCAGAACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091180.3 |
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| CDS CCA 72 bp | AAACGATCTACAAGGCTAAGAGGAAACTCACCTCTCTaGGAGTGGGTTCTTTTCTGTCTTCTTCGCCTTTGC | + |
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Preference number: 6 (lower is better) Translates to: KRSTRLRGNSPL*EWVLFCLLRLC Trigger: GCAAAGGCGAAGAAGACAGAAAAGAACCCACTCCCAGAGAGGTGAGTTTCCTCTTAGCCTTGTAGATCGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091180.3 |
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| CDS CCA 72 bp | TCTACAAGGCTAAGAGGAAACTCACCTCTCTGGGAGTaGGTTCTTTTCTGTCTTCTTCGCCTTTGCATTTTC | + |
|
Preference number: 6 (lower is better) Translates to: STRLRGNSPLWE*VLFCLLRLCIF Trigger: GAAAATGCAAAGGCGAAGAAGACAGAAAAGAACCCACTCCCAGAGAGGTGAGTTTCCTCTTAGCCTTGTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091180.3 |
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