Pregenerated sensors for H2AL1D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094904

Ensembl transcript IDs: ENSMUST00000178595.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 72 bp	GACGTACATCCTCTGGAGCTATGCGCTTCCTGCCAGTaGTCTGGGCCACCTCACCAGCCAGTTCGAGGATGT	+
Preference number: 6 (lower is better) Translates to: DVHPLELCASCQ*SGPPHQPVRGC Trigger: ACATCCTCGAACTGGCTGGTGAGGTGGCCCAGACCACTGGCAGGAAGCGCATAGCTCCAGAGGATGTACGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178595.2
CDS CCA 72 bp	ACATCCTCTGGAGCTATGCGCTTCCTGCCAGTGGTCTaGGCCACCTCACCAGCCAGTTCGAGGATGTTCGAT	+
Preference number: 6 (lower is better) Translates to: TSSGAMRFLPVV*ATSPASSRMFD Trigger: ATCGAACATCCTCGAACTGGCTGGTGAGGTGGCCCAGACCACTGGCAGGAAGCGCATAGCTCCAGAGGATGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178595.2
CDS CCA 72 bp	CTGTTCGTTGTTCTGTACCACCAGACGTACATCCTCTaGAGCTATGCGCTTCCTGCCAGTGGTCTGGGCCAC	+
Preference number: 6 (lower is better) Translates to: LFVVLYHQTYIL*SYALPASGLGH Trigger: GTGGCCCAGACCACTGGCAGGAAGCGCATAGCTCCAGAGGATGTACGTCTGGTGGTACAGAACAACGAACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178595.2
CDS CCA 72 bp	AGGAATGAAAGTGCGGAAGAGCTCAGGCGACTGGAATaGAATTCCTCTCGTAGGAAACGATCTACAAGGCTG	+
Preference number: 6 (lower is better) Translates to: RNESAEELRRLE*NSSRRKRSTRL Trigger: CAGCCTTGTAGATCGTTTCCTACGAGAGGAATTCCATTCCAGTCGCCTGAGCTCTTCCGCACTTTCATTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178595.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu