Pregenerated sensors for H2AJ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060032Ensembl transcript IDs: ENSMUST00000074556.7, ENSMUST00000203982.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACCCGCTGGGTTCCTCCGGCTCGCACATGGCCACACAGGTGGCCTaGGTCACGCTCAAAGTTGGAACTCGTCCCCACCCAACACCCCCT | + |
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Preference number: 1 (lower is better) Translates to: HPLGSSGSHMATQVA*VTLKVGTRPHPTPP Trigger: AGGGGGTGTTGGGTGGGGACGAGTTCCAACTTTGAGCGTGACGCAGGCCACCTGTGTGGCCATGTGCGAGCCGGAGGAACCCAGCGGGTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR CCA 90 bp | CAATCCACCCGCTGGGTTCCTCCGGCTCGCACATGGCCACACAGGTaGCCTGCGTCACGCTCAAAGTTGGAACTCGTCCCCACCCAACAC | + |
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Preference number: 1 (lower is better) Translates to: QSTRWVPPARTWPHR*PASRSKLELVPTQH Trigger: GTGTTGGGTGGGGACGAGTTCCAACTTTGAGCGTGACGCAGGCCACCTGTGTGGCCATGTGCGAGCCGGAGGAACCCAGCGGGTGGATTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR CCA 90 bp | GCGACTACACAGCTCTCTAGATTACTCGCTTTTCACCGACTTTATTaGCTGCGGACTGTGGCGGGCGGGCTCTGCACCCGTCTGTCGGGT | + |
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Preference number: 1 (lower is better) Translates to: ATTQLSRLLAFHRLY*LRTVAGGLCTRLSG Trigger: ACCCGACAGACGGGTGCAGAGCCCGCCCGCCACAGTCCGCAGCCAATAAAGTCGGTGAAAAGCGAGTAATCTAGAGAGCTGTGTAGTCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR GCA 90 bp | ACGCAACACCATCCAGAGCGCAAACTTCGTGACTCACTTCCGTATTaGACAAGTTACTTCATTATAAAGAATATTGAACACAAGTGTGCA | + |
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Preference number: 1 (lower is better) Translates to: TQHHPERKLRDSLPY*TSYFIIKNIEHKCA Trigger: TGCACACTTGTGTTCAATATTCTTTATAATGAAGTAACTTGTGCAATACGGAAGTGAGTCACGAAGTTTGCGCTCTGGATGGTGTTGCGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR-3UTR CCA 90 bp | ATTTCGAGGGGAAATACTGCAAATGAAGAGGAAGACTTGAACTCTGACTCCCCCATTGGCTGCGGACTGTaGCGGGCGGGCTCTGCACCC | + |
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Preference number: 2 (lower is better) Translates to: ISRGNTANEEEDLNSDSPIGCGL*RAGSAP Trigger: GGGTGCAGAGCCCGCCCGCCACAGTCCGCAGCCAAT...GGGGGAGTCAGAGTTCAAGTCTTCCTCTTCATTTGCAGTATTTCCCCTCGAAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR CAA 90 bp | AACGGAATGACCAAGGCAAGAATCGCATTTCCAGGGCCCTGGGGTTaGGCTCTCCGCGTTACGTTAACTCACACGACCCTTTCCTTCCTT | + |
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Preference number: 2 (lower is better) Translates to: NGMTKARIAFPGPWG*ALRVTLTHTTLSFL Trigger: AAGGAAGGAAAGGGTCGTGTGAGTTAACGTAACGCGGAGAGCCAAACCCCAGGGCCCTGGAAATGCGATTCTTGCCTTGGTCATTCCGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074556.7 ENSMUST00000203982.2 |
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| 3UTR-3UTR TCA 90 bp | ATTTCGAGGGGAAATACTGCAAATGAAGAGGAAGACTTGAACTCTGACTCCCCCCACAAGTGTGCAATGTaGAGATGGCTGGCATTCAGA | + |
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Preference number: 2 (lower is better) Translates to: ISRGNTANEEEDLNSDSPHKCAM*RWLAFR Trigger: TCTGAATGCCAGCCATCTTCACATTGCACACTTGTG...GGGGGAGTCAGAGTTCAAGTCTTCCTCTTCATTTGCAGTATTTCCCCTCGAAAT 47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR CCA 72 bp | CATGGCCACACAGGTGGCCTGCGTCACGCTCAAAGTTaGAACTCGTCCCCACCCAACACCCCCTCGGTCCCG | + |
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Preference number: 3 (lower is better) Translates to: HGHTGGLRHAQS*NSSPPNTPSVP Trigger: CGGGACCGAGGGGGTGTTGGGTGGGGACGAGTTCCAACTTTGAGCGTGACGCAGGCCACCTGTGTGGCCATG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR CCA 72 bp | CGCTGGGTTCCTCCGGCTCGCACATGGCCACACAGGTaGCCTGCGTCACGCTCAAAGTTGGAACTCGTCCCC | + |
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Preference number: 3 (lower is better) Translates to: RWVPPARTWPHR*PASRSKLELVP Trigger: GGGGACGAGTTCCAACTTTGAGCGTGACGCAGGCCACCTGTGTGGCCATGTGCGAGCCGGAGGAACCCAGCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR GCA 72 bp | GGTTCCTCCGGCTCGCACATGGCCACACAGGTGGCCTaGGTCACGCTCAAAGTTGGAACTCGTCCCCACCCA | + |
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Preference number: 3 (lower is better) Translates to: GSSGSHMATQVA*VTLKVGTRPHP Trigger: TGGGTGGGGACGAGTTCCAACTTTGAGCGTGACGCAGGCCACCTGTGTGGCCATGTGCGAGCCGGAGGAACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR CCA 72 bp | TCCCAATCCACCCGCTGGGTTCCTCCGGCTCGCACATaGCCACACAGGTGGCCTGCGTCACGCTCAAAGTTG | + |
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Preference number: 3 (lower is better) Translates to: SQSTRWVPPART*PHRWPASRSKL Trigger: CAACTTTGAGCGTGACGCAGGCCACCTGTGTGGCCATGTGCGAGCCGGAGGAACCCAGCGGGTGGATTGGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR CCA 72 bp | GGAATGACCAAGGCAAGAATCGCATTTCCAGGGCCCTaGGGTTTGGCTCTCCGCGTTACGTTAACTCACACG | + |
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Preference number: 3 (lower is better) Translates to: GMTKARIAFPGP*GLALRVTLTHT Trigger: CGTGTGAGTTAACGTAACGCGGAGAGCCAAACCCCAGGGCCCTGGAAATGCGATTCTTGCCTTGGTCATTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074556.7 ENSMUST00000203982.2 |
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| 3UTR TCA 72 bp | AGCCACGAAAGGCGTTCTACTTCCCAAATGCAGGGATaGGGGGTAACACCACCGCAAGCACCAAGAGAAGAT | + |
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Preference number: 3 (lower is better) Translates to: SHERRSTSQMQG*GVTPPQAPRED Trigger: ATCTTCTCTTGGTGCTTGCGGTGGTGTTACCCCTCATCCCTGCATTTGGGAAGTAGAACGCCTTTCGTGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR-3UTR CAA 90 bp | ATTTCGAGGGGAAATACTGCAAATGAAGAGGAAGACTTGAACTCTGACTCCCCCGCGTCACGCTCAAAGTaGGAACTCGTCCCCACCCAA | + |
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Preference number: 3 (lower is better) Translates to: ISRGNTANEEEDLNSDSPASRSK*ELVPTQ Trigger: TTGGGTGGGGACGAGTTCCAACTTTGAGCGTGACGC...GGGGGAGTCAGAGTTCAAGTCTTCCTCTTCATTTGCAGTATTTCCCCTCGAAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR TCA 72 bp | CCGCGTTACGTTAACTCACACGACCCTTTCCTTCCTTaGGGCGCCATCACCCAACTCAACAGTTACGGAAAA | + |
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Preference number: 3 (lower is better) Translates to: PRYVNSHDPFLP*GAITQLNSYGK Trigger: TTTTCCGTAACTGTTGAGTTGGGTGATGGCGCCTCAAGGAAGGAAAGGGTCGTGTGAGTTAACGTAACGCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074556.7 ENSMUST00000203982.2 |
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| 3UTR TCA 72 bp | TTTGTGGCTCCTGCTAACAGAATGATGGTTACTGAGTaGGCAGGAAACGGAATGACCAAGGCAAGAATCGCA | + |
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Preference number: 3 (lower is better) Translates to: FVAPANRMMVTE*AGNGMTKARIA Trigger: TGCGATTCTTGCCTTGGTCATTCCGTTTCCTGCTCACTCAGTAACCATCATTCTGTTAGCAGGAGCCACAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR CCA 72 bp | GCCTCATTCACAGCTGTACCCTCAGTTACTAGCACGTaGTGTAGACGTCATACCAATACTGGGAATGAAATA | + |
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Preference number: 3 (lower is better) Translates to: ASFTAVPSVTST*CRRHTNTGNEI Trigger: TATTTCATTCCCAGTATTGGTATGACGTCTACACCACGTGCTAGTAACTGAGGGTACAGCTGTGAATGAGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR CCA 72 bp | AGAATATTGAACACAAGTGTGCAATGTGAAGATGGCTaGCATTCAGATCACGAATACGTAACATCTATTAGC | + |
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Preference number: 3 (lower is better) Translates to: RILNTSVQCEDG*HSDHEYVTSIS Trigger: GCTAATAGATGTTACGTATTCGTGATCTGAATGCCAGCCATCTTCACATTGCACACTTGTGTTCAATATTCT 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR TCA 72 bp | TTCATTATAAAGAATATTGAACACAAGTGTGCAATGTaGAGATGGCTGGCATTCAGATCACGAATACGTAAC | + |
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Preference number: 3 (lower is better) Translates to: FIIKNIEHKCAM*RWLAFRSRIRN Trigger: GTTACGTATTCGTGATCTGAATGCCAGCCATCTTCACATTGCACACTTGTGTTCAATATTCTTTATAATGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR CAA 72 bp | ACATGGCCACACAGGTGGCCTGCGTCACGCTCAAAGTaGGAACTCGTCCCCACCCAACACCCCCTCGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: TWPHRWPASRSK*ELVPTQHPLGP Trigger: GGGACCGAGGGGGTGTTGGGTGGGGACGAGTTCCAACTTTGAGCGTGACGCAGGCCACCTGTGTGGCCATGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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| 3UTR CAA 72 bp | ACCAAGGCAAGAATCGCATTTCCAGGGCCCTGGGGTTaGGCTCTCCGCGTTACGTTAACTCACACGACCCTT | + |
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Preference number: 4 (lower is better) Translates to: TKARIAFPGPWG*ALRVTLTHTTL Trigger: AAGGGTCGTGTGAGTTAACGTAACGCGGAGAGCCAAACCCCAGGGCCCTGGAAATGCGATTCTTGCCTTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074556.7 ENSMUST00000203982.2 |
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| CDS-3UTR CCA 90 bp | TCTCAGAATCAGTGCTGGATAAGAGGCTGCCATGCAGCTAAAACTCGAGGGGAGTTGCTCTTCACCTTCTaGCTCTCCGTCTTCTTGGGC | + |
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Preference number: 4 (lower is better) Translates to: SQNQCWIRGCHAAKTRGELLFTF*LSVFLG Trigger: GCCCAAGAAGACGGAGAGCCAGAAGGTGAAGAGCAA...CTCCCCTCGAGTTTTAGCTGCATGGCAGCCTCTTATCCAGCACTGATTCTGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074556.7 |
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