RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for H2AC6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069270

Ensembl transcript IDs: ENSMUST00000171127.4

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTTGAGGGCAGCCTGAGGTATAATGGACCCAGCATAAACAAACAATaGCATTCTTCTTCAGCAAGGCATGTTGACTCATGCCTGTACTCC +
Preference number: 1 (lower is better)
Translates to: FEGSLRYNGPSINKQ*HSSSARHVDSCLYS
Trigger: GGAGTACAGGCATGAGTCAACATGCCTTGCTGAAGAAGAATGGCATTGTTTGTTTATGCTGGGTCCATTATACCTCAGGCTGCCCTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR TCA 90 bp GCCAGTCTTAGTTATGTAGTAAGTACCCAGGCAGCTTGGGTCTCATaGGATCCGTTTCTCCCAAACCCAAACAACTCAGAAAACTCCTTT +
Preference number: 1 (lower is better)
Translates to: ASLSYVVSTQAAWVS*DPFLPNPNNSENSF
Trigger: AAAGGAGTTTTCTGAGTTGTTTGGGTTTGGGAGAAACGGATCTCATGAGACCCAAGCTGCCTGGGTACTTACTACATAACTAAGACTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR GCA 90 bp TTCATCAAAACATCTACAATAGCAATAGCACTTGTTTTTGACTGTTaGTTACAAGGATTAGTGAGGAACACATATCTACCCAGCATGCAG +
Preference number: 1 (lower is better)
Translates to: FIKTSTIAIALVFDC*LQGLVRNTYLPSMQ
Trigger: CTGCATGCTGGGTAGATATGTGTTCCTCACTAATCCTTGTAAGCAACAGTCAAAAACAAGTGCTATTGCTATTGTAGATGTTTTGATGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR CAA 90 bp ATATCTACCCAGCATGCAGTGGTGCCTACCCAGCAGCCATCTGTCTaGATCAGCCTGTGCTCTTCTAATTTCAGGGTACACACTACAGAG +
Preference number: 2 (lower is better)
Translates to: ISTQHAVVPTQQPSV*ISLCSSNFRVHTTE
Trigger: CTCTGTAGTGTGTACCCTGAAATTAGAAGAGCACAGGCTGATCAAGACAGATGGCTGCTGGGTAGGCACCACTGCATGCTGGGTAGATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR-3UTR GCA 90 bp CTAGGCCTGACACTGCTTATCTTCTACAATCAGTCACATTTAGGTGGTATGATCGGCATGGTTGTGCATTaGCTTTATTCTCAGCCCTCC +
Preference number: 2 (lower is better)
Translates to: LGLTLLIFYNQSHLGGMIGMVVH*LYSQPS
Trigger: GGAGGGCTGAGAATAAAGGCAATGCACAACCATGCC...GATCATACCACCTAAATGTGACTGATTGTAGAAGATAAGCAGTGTCAGGCCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR-3UTR TCA 90 bp ACCCAGCAGCCATCTGTCTTGATCAGCCTGTGCTCTTCTAATTTCAGGGTACACCTTTTCATAGCAAAGTaGACACAGACACAGAAAGAT +
Preference number: 2 (lower is better)
Translates to: TQQPSVLISLCSSNFRVHLFIAK*TQTQKD
Trigger: ATCTTTCTGTGTCTGTGTTCACTTTGCTATGAAAAG...GTGTACCCTGAAATTAGAAGAGCACAGGCTGATCAAGACAGATGGCTGCTGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR-3UTR TCA 90 bp ACATACTGTCAAGTTTTAACACCTGGCCCCCTTTATACAGAGTCTGTGAAACTTAGCAGCCATCTGTCTTaGTCAGCCTGTGCTCTTCTA +
Preference number: 2 (lower is better)
Translates to: TYCQVLTPGPLYTESVKLSSHLS*SACALL
Trigger: TAGAAGAGCACAGGCTGATCAAGACAGATGGCTGCT...AAGTTTCACAGACTCTGTATAAAGGGGGCCAGGTGTTAAAACTTGACAGTATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR-3UTR TCA 90 bp CTAGGCCTGACACTGCTTATCTTCTACAATCAGTCACATTTAGGTGGTATGATCATGACTACCTGCATGTaGGTTAGAATGAGCTGCCAT +
Preference number: 2 (lower is better)
Translates to: LGLTLLIFYNQSHLGGMIMTTCM*VRMSCH
Trigger: ATGGCAGCTCATTCTAACTCACATGCAGGTAGTCAT...GATCATACCACCTAAATGTGACTGATTGTAGAAGATAAGCAGTGTCAGGCCTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR-3UTR CCA 90 bp ACAGAGTCAGGGTCTTTTCATAGCAAAGTGAACACAGACACAGAAAGATGTTGGACATTTGAGAAATGGTaGCAGAAACCTCAGGAGTCC +
Preference number: 2 (lower is better)
Translates to: TESGSFHSKVNTDTERCWTFEKW*QKPQES
Trigger: GGACTCCTGAGGTTTCTGCCACCATTTCTCAAATGT...CCAACATCTTTCTGTGTCTGTGTTCACTTTGCTATGAAAAGACCCTGACTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR-3UTR TCA 90 bp GACACTGCTTATCTTCTACAATCAGTCACATTTAGGTGGTATGATCATAGAACTGCATGTGAGTTAGAATaGGCTGCCATCATCAGAGAA +
Preference number: 2 (lower is better)
Translates to: DTAYLLQSVTFRWYDHRTACELE*AAIIRE
Trigger: TTCTCTGATGATGGCAGCTCATTCTAACTCACATGC...AGTTCTATGATCATACCACCTAAATGTGACTGATTGTAGAAGATAAGCAGTGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR-3UTR TCA 90 bp ACATACTGTCAAGTTTTAACACCTGGCCCCCTTTATACAGAGTCTGTGAAACTTTTCATAAGAACTCCATaGCTACCTGCATGTGAGTTA +
Preference number: 2 (lower is better)
Translates to: TYCQVLTPGPLYTESVKLFIRTP*LPACEL
Trigger: TAACTCACATGCAGGTAGTCATGGAGTTCTTATGAA...AAGTTTCACAGACTCTGTATAAAGGGGGCCAGGTGTTAAAACTTGACAGTATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR TCA 72 bp AGCATGCAGTGGTGCCTACCCAGCAGCCATCTGTCTTaGTCAGCCTGTGCTCTTCTAATTTCAGGGTACACA +
Preference number: 3 (lower is better)
Translates to: SMQWCLPSSHLS*SACALLISGYT
Trigger: TGTGTACCCTGAAATTAGAAGAGCACAGGCTGATCAAGACAGATGGCTGCTGGGTAGGCACCACTGCATGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR GCA 72 bp ACACACACACACACACCAATGGGCATGGTTGTGCATTaGCTTTATTCTCAGCCCTCCATAAACAGAGGCAGG +
Preference number: 3 (lower is better)
Translates to: THTHTPMGMVVH*LYSQPSINRGR
Trigger: CCTGCCTCTGTTTATGGAGGGCTGAGAATAAAGGCAATGCACAACCATGCCCATTGGTGTGTGTGTGTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR CCA 72 bp AGGATCCAGGTTCTCAAACTTGAAGGAATCCCGAGCTaGACTCCTGACCAAACAGTAGTAGCTATGCACAGT +
Preference number: 3 (lower is better)
Translates to: RIQVLKLEGIPS*TPDQTVVAMHS
Trigger: ACTGTGCATAGCTACTACTGTTTGGTCAGGAGTCCAGCTCGGGATTCCTTCAAGTTTGAGAACCTGGATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR-3UTR CAA 90 bp CAGCCATCTGTCTTGATCAGCCTGTGCTCTTCTAATTTCAGGGTACACACTACACTTCAGCAAGGCATGTaGACTCATGCCTGTACTCCT +
Preference number: 3 (lower is better)
Translates to: QPSVLISLCSSNFRVHTTLQQGM*THACTP
Trigger: AGGAGTACAGGCATGAGTCAACATGCCTTGCTGAAG...TGTAGTGTGTACCCTGAAATTAGAAGAGCACAGGCTGATCAAGACAGATGGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR-3UTR CAA 90 bp TCCTCAGCCCTTTATCTTCACAGTTTCTGGGCATCCGATCATTTTTCTTTTAGAGGGCATGGTTGTGCATaGCCTTTATTCTCAGCCCTC +
Preference number: 3 (lower is better)
Translates to: SSALYLHSFWASDHFSFRGHGCA*PLFSAL
Trigger: GAGGGCTGAGAATAAAGGCAATGCACAACCATGCCC...TCTAAAAGAAAAATGATCGGATGCCCAGAAACTGTGAAGATAAAGGGCTGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR TCA 72 bp AGTTATGTAGTAAGTACCCAGGCAGCTTGGGTCTCATaGGATCCGTTTCTCCCAAACCCAAACAACTCAGAA +
Preference number: 3 (lower is better)
Translates to: SYVVSTQAAWVS*DPFLPNPNNSE
Trigger: TTCTGAGTTGTTTGGGTTTGGGAGAAACGGATCTCATGAGACCCAAGCTGCCTGGGTACTTACTACATAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR GCA 72 bp AGCCTGAGGTATAATGGACCCAGCATAAACAAACAATaGCATTCTTCTTCAGCAAGGCATGTTGACTCATGC +
Preference number: 3 (lower is better)
Translates to: SLRYNGPSINKQ*HSSSARHVDSC
Trigger: GCATGAGTCAACATGCCTTGCTGAAGAAGAATGGCATTGTTTGTTTATGCTGGGTCCATTATACCTCAGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR CCA 72 bp ACTAATTTCTGGTTAACACACACACACACACACCAATaGGCATGGTTGTGCATTGCCTTTATTCTCAGCCCT +
Preference number: 3 (lower is better)
Translates to: TNFWLTHTHTHQ*AWLCIAFILSP
Trigger: AGGGCTGAGAATAAAGGCAATGCACAACCATGCCCATTGGTGTGTGTGTGTGTGTGTTAACCAGAAATTAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR CCA 72 bp TTCTCCAGTATCAGTAAGACTGCAAGCACTAATTTCTaGTTAACACACACACACACACACCAATGGGCATGG +
Preference number: 3 (lower is better)
Translates to: FSSISKTASTNF*LTHTHTHQWAW
Trigger: CCATGCCCATTGGTGTGTGTGTGTGTGTGTTAACCAGAAATTAGTGCTTGCAGTCTTACTGATACTGGAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR TCA 72 bp TTGGTAATTCATAAGAACTCCATGACTACCTGCATGTaGGTTAGAATGAGCTGCCATCATCAGAGAAACTCC +
Preference number: 3 (lower is better)
Translates to: LVIHKNSMTTCM*VRMSCHHQRNS
Trigger: GGAGTTTCTCTGATGATGGCAGCTCATTCTAACTCACATGCAGGTAGTCATGGAGTTCTTATGAATTACCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR GCA 72 bp CTTAGACCAGAAGTTCTGAGACCTTTGACTTTAAGCTaGCCAATCTATCAAATTCTAGGGGGTACTACCAAT +
Preference number: 3 (lower is better)
Translates to: LRPEVLRPLTLS*PIYQILGGTTN
Trigger: ATTGGTAGTACCCCCTAGAATTTGATAGATTGGGCAGCTTAAAGTCAAAGGTCTCAGAACTTCTGGTCTAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR-3UTR CAA 90 bp GACACTGCTTATCTTCTACAATCAGTCACATTTAGGTGGTATGATCATAGAACTAAAGAGCCTTTGGGTTaGAAGTTTCCGCAGATTCTG +
Preference number: 3 (lower is better)
Translates to: DTAYLLQSVTFRWYDHRTKEPLG*KFPQIL
Trigger: CAGAATCTGCGGAAACTTCAAACCCAAAGGCTCTTT...AGTTCTATGATCATACCACCTAAATGTGACTGATTGTAGAAGATAAGCAGTGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR TCA 72 bp AGTACTAAAAACATACAACCTTCAGCTGGCTTACATTaGCAAACATTAGTATTCGGCTTAGACCAGAAGTTC +
Preference number: 3 (lower is better)
Translates to: STKNIQPSAGLH*QTLVFGLDQKF
Trigger: GAACTTCTGGTCTAAGCCGAATACTAATGTTTGTCAATGTAAGCCAGCTGAAGGTTGTATGTTTTTAGTACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR GCA 72 bp ACATCTACAATAGCAATAGCACTTGTTTTTGACTGTTaGTTACAAGGATTAGTGAGGAACACATATCTACCC +
Preference number: 3 (lower is better)
Translates to: TSTIAIALVFDC*LQGLVRNTYLP
Trigger: GGGTAGATATGTGTTCCTCACTAATCCTTGTAAGCAACAGTCAAAAACAAGTGCTATTGCTATTGTAGATGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR CAA 72 bp CAGCATGCAGTGGTGCCTACCCAGCAGCCATCTGTCTaGATCAGCCTGTGCTCTTCTAATTTCAGGGTACAC +
Preference number: 4 (lower is better)
Translates to: QHAVVPTQQPSV*ISLCSSNFRVH
Trigger: GTGTACCCTGAAATTAGAAGAGCACAGGCTGATCAAGACAGATGGCTGCTGGGTAGGCACCACTGCATGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
CDS-3UTR GCA 90 bp TCAGGGTCTTTTCATAGCAAAGTGAACACAGACACAGAAAGATGTTGGGATAGGCCGAGTAGTTACCCTTaGGGAGCAGCCGGTGCACGC +
Preference number: 4 (lower is better)
Translates to: SGSFHSKVNTDTERCWDRPSSYP*GAAGAR
Trigger: GCGTGCACCGGCTGCTCCGCAAGGGTAACTACTCGG...CCTATCCCAACATCTTTCTGTGTCTGTGTTCACTTTGCTATGAAAAGACCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4
3UTR CAA 72 bp CACACACACACACACACCAATGGGCATGGTTGTGCATaGCCTTTATTCTCAGCCCTCCATAAACAGAGGCAG +
Preference number: 4 (lower is better)
Translates to: HTHTHTNGHGCA*PLFSALHKQRQ
Trigger: CTGCCTCTGTTTATGGAGGGCTGAGAATAAAGGCAATGCACAACCATGCCCATTGGTGTGTGTGTGTGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171127.4