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Pregenerated sensors for H2AB3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000083616

Ensembl transcript IDs: ENSMUST00000122050.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GCTGTTCCACCAGGCTCACAGCAAAGATTAGCTCAGCTCTGGAGGTaGGGGAGCGACGGTGGCGGCGACCTGAAGACTCTCGAAGACAGT +
Preference number: 5 (lower is better)
Translates to: AVPPGSQQRLAQLWR*GSDGGGDLKTLEDS
Trigger: ACTGTCTTCGAGAGTCTTCAGGTCGCCGCCACCGTCGCTCCCGCACCTCCAGAGCTGAGCTAATCTTTGCTGTGAGCCTGGTGGAACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122050.2
CDS GCA 90 bp GGCACCGTATCACTGAGCCTCCGGGCACGGCTAACCTCCCTCAGATaGTGTTCCACCAGGCTCACAGCAAAGATTAGCTCAGCTCTGGAG +
Preference number: 5 (lower is better)
Translates to: GTVSLSLRARLTSLR*CSTRLTAKISSALE
Trigger: CTCCAGAGCTGAGCTAATCTTTGCTGTGAGCCTGGTGGAACAGCATCTGAGGGAGGTTAGCCGTGCCCGGAGGCTCAGTGATACGGTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122050.2
CDS CCA 90 bp TCAGATGCTGTTCCACCAGGCTCACAGCAAAGATTAGCTCAGCTCTaGAGGTGCGGGAGCGACGGTGGCGGCGACCTGAAGACTCTCGAA +
Preference number: 5 (lower is better)
Translates to: SDAVPPGSQQRLAQL*RCGSDGGGDLKTLE
Trigger: TTCGAGAGTCTTCAGGTCGCCGCCACCGTCGCTCCCGCACCTCCAGAGCTGAGCTAATCTTTGCTGTGAGCCTGGTGGAACAGCATCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122050.2
CDS TCA 72 bp GGGCCTCATTGCCGGCAAGCTCCAGCAACCTGCGGGTaGGGGACTCCAGGATGGCTGCCAGGAAGATGGGCA +
Preference number: 6 (lower is better)
Translates to: GPHCRQAPATCG*GTPGWLPGRWA
Trigger: TGCCCATCTTCCTGGCAGCCATCCTGGAGTCCCTCACCCGCAGGTTGCTGGAGCTTGCCGGCAATGAGGCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122050.2
CDS CAA 72 bp GTGATGCGCCTCTCGGTACCTCTGCGTTGGGCCTCATaGCCGGCAAGCTCCAGCAACCTGCGGGTGAGGGAC +
Preference number: 6 (lower is better)
Translates to: VMRLSVPLRWAS*PASSSNLRVRD
Trigger: GTCCCTCACCCGCAGGTTGCTGGAGCTTGCCGGCAATGAGGCCCAACGCAGAGGTACCGAGAGGCGCATCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122050.2
CDS CCA 72 bp GTTCCACCAGGCTCACAGCAAAGATTAGCTCAGCTCTaGAGGTGCGGGAGCGACGGTGGCGGCGACCTGAAG +
Preference number: 6 (lower is better)
Translates to: VPPGSQQRLAQL*RCGSDGGGDLK
Trigger: CTTCAGGTCGCCGCCACCGTCGCTCCCGCACCTCCAGAGCTGAGCTAATCTTTGCTGTGAGCCTGGTGGAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122050.2
CDS TCA 72 bp AGCTCTGGAGGTGCGGGAGCGACGGTGGCGGCGACCTaGAGACTCTCGAAGACAGTTTTCCCTGTTCCTTGG +
Preference number: 6 (lower is better)
Translates to: SSGGAGATVAAT*RLSKTVFPVPW
Trigger: CCAAGGAACAGGGAAAACTGTCTTCGAGAGTCTTCAGGTCGCCGCCACCGTCGCTCCCGCACCTCCAGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122050.2
CDS CCA 72 bp AAGATTAGCTCAGCTCTGGAGGTGCGGGAGCGACGGTaGCGGCGACCTGAAGACTCTCGAAGACAGTTTTCC +
Preference number: 6 (lower is better)
Translates to: KISSALEVRERR*RRPEDSRRQFS
Trigger: GGAAAACTGTCTTCGAGAGTCTTCAGGTCGCCGCCACCGTCGCTCCCGCACCTCCAGAGCTGAGCTAATCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122050.2
CDS GCA 72 bp TCACTGAGCCTCCGGGCACGGCTAACCTCCCTCAGATaGTGTTCCACCAGGCTCACAGCAAAGATTAGCTCA +
Preference number: 6 (lower is better)
Translates to: SLSLRARLTSLR*CSTRLTAKISS
Trigger: TGAGCTAATCTTTGCTGTGAGCCTGGTGGAACAGCATCTGAGGGAGGTTAGCCGTGCCCGGAGGCTCAGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122050.2
CDS TCA 72 bp TATTGCTGTAGACAGCCAAGTCCAGCAGTTCAGGAGTaGTGCGCCTCTCGGTACCTCTGCGTTGGGCCTCAT +
Preference number: 6 (lower is better)
Translates to: YCCRQPSPAVQE*CASRYLCVGPH
Trigger: ATGAGGCCCAACGCAGAGGTACCGAGAGGCGCATCACTCCTGAACTGCTGGACTTGGCTGTCTACAGCAATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122050.2