Pregenerated sensors for H2AB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000082482Ensembl transcript IDs: ENSMUST00000118616.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCTGTTCCACCAGGCTCACTGCAAAGATCAGCTCACCTCTGGAGGTaGGGGAGTGATGTTGGCGGTGACCTGAAGACCTTTGAAGACAGT | + |
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Preference number: 5 (lower is better) Translates to: AVPPGSLQRSAHLWR*GSDVGGDLKTFEDS Trigger: ACTGTCTTCAAAGGTCTTCAGGTCACCGCCAACATCACTCCCGCACCTCCAGAGGTGAGCTGATCTTTGCAGTGAGCCTGGTGGAACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118616.3 |
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| CDS TCA 72 bp | GGGCCTCATTGCCCGCAAGCTCCAGCAACCTGCTGGTaGGGAACTCCAGGATGGCTACCAGGGAGACGGGCA | + |
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Preference number: 6 (lower is better) Translates to: GPHCPQAPATCW*GTPGWLPGRRA Trigger: TGCCCGTCTCCCTGGTAGCCATCCTGGAGTTCCTCACCAGCAGGTTGCTGGAGCTTGCGGGCAATGAGGCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118616.3 |
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| CDS CAA 72 bp | GTGATGAGCCTCTGGGTACCTCTGCGTTGGGCCTCATaGCCCGCAAGCTCCAGCAACCTGCTGGTGAGGAAC | + |
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Preference number: 6 (lower is better) Translates to: VMSLWVPLRWAS*PASSSNLLVRN Trigger: GTTCCTCACCAGCAGGTTGCTGGAGCTTGCGGGCAATGAGGCCCAACGCAGAGGTACCCAGAGGCTCATCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118616.3 |
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| CDS GCA 72 bp | GCTAACCTCCCTCAGATGCTGTTCCACCAGGCTCACTaGAAAGATCAGCTCACCTCTGGAGGTGCGGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: ANLPQMLFHQAH*KDQLTSGGAGV Trigger: CACTCCCGCACCTCCAGAGGTGAGCTGATCTTTGCAGTGAGCCTGGTGGAACAGCATCTGAGGGAGGTTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118616.3 |
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| CDS GCA 72 bp | CCAGGCTCACTGCAAAGATCAGCTCACCTCTGGAGGTaGGGGAGTGATGTTGGCGGTGACCTGAAGACCTTT | + |
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Preference number: 6 (lower is better) Translates to: PGSLQRSAHLWR*GSDVGGDLKTF Trigger: AAAGGTCTTCAGGTCACCGCCAACATCACTCCCGCACCTCCAGAGGTGAGCTGATCTTTGCAGTGAGCCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118616.3 |
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