Pregenerated sensors for H2-T24 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053835Ensembl transcript IDs: ENSMUST00000113760.10, ENSMUST00000174063.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCCAGCTCGGTAGAGTCAGGATATCAAACACAGATCAGCAGCAGTaGCACTACCTAGCAGACACAGCCAAGCCTCAGCCCAAGTCAGCA | + |
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Preference number: 1 (lower is better) Translates to: VQLGRVRISNTDQQQ*HYLADTAKPQPKSA Trigger: TGCTGACTTGGGCTGAGGCTTGGCTGTGTCTGCTAGGTAGTGCCACTGCTGCTGATCTGTGTTTGATATCCTGACTCTACCGAGCTGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| 3UTR TCA 90 bp | GGAGAGATGGCTCAGTGCTTAAGAGCACCGTTCTTCCGAAGGTCCTaGGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGT | + |
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Preference number: 1 (lower is better) Translates to: GEMAQCLRAPFFRRS*VQIPATTWWLTTIR Trigger: ACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACGGTGCTCTTAAGCACTGAGCCATCTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| 3UTR TCA 90 bp | ATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTaGCTCCCTCTTCTGGAGTGTATGAGGACAGCGACAGTGTACTTA | + |
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Preference number: 1 (lower is better) Translates to: IPATTWWLTTIRNEI*LPLLECMRTATVYL Trigger: TAAGTACACTGTCGCTGTCCTCATACACTCCAGAAGAGGGAGTCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| 3UTR GCA 90 bp | GTTTGTACCACCTTGCCTGGATCTAAATTAAGCTGGGTAGGATCTTaGCCCAAATCCCTTAATCTGTTATCTCCATTTCACTTCCTGGTG | + |
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Preference number: 1 (lower is better) Translates to: VCTTLPGSKLSWVGS*PKSLNLLSPFHFLV Trigger: CACCAGGAAGTGAAATGGAGATAACAGATTAAGGGATTTGGGGCAAGATCCTACCCAGCTTAATTTAGATCCAGGCAAGGTGGTACAAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| 3UTR-3UTR TCA 90 bp | CAGCAGCAGTGGCACTACCTAGCAGACACAGCCAAGCCTCAGCCCAAGTCAGCAGAAACCTGTGTCCTCTaGGGATCATGGCCAGGTCTG | + |
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Preference number: 2 (lower is better) Translates to: QQQWHYLADTAKPQPKSAETCVL*GSWPGL Trigger: CAGACCTGGCCATGATCCTCAGAGGACACAGGTTTC...TGCTGACTTGGGCTGAGGCTTGGCTGTGTCTGCTAGGTAGTGCCACTGCTGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| 3UTR-3UTR TCA 90 bp | CTACCTAGCAGACACAGCCAAGCCTCAGCCCAAGTCAGCAGAAAGGACCAGGGTGAAACCTGTGTCCTCTaGGGATCATGGCCAGGTCTG | + |
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Preference number: 2 (lower is better) Translates to: LPSRHSQASAQVSRKDQGETCVL*GSWPGL Trigger: CAGACCTGGCCATGATCCTCAGAGGACACAGGTTTC...ACCCTGGTCCTTTCTGCTGACTTGGGCTGAGGCTTGGCTGTGTCTGCTAGGTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| 3UTR-3UTR GCA 90 bp | GGACCAGGGTCAACAGCAATGCCAGTGCTTAGTTGTGCCTCTCTTCAGCTAAGAGGAGAGATGGCTCAGTaGTTAAGAGCACCGTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: GPGSTAMPVLSCASLQLRGEMAQ*LRAPFF Trigger: GAAGAACGGTGCTCTTAAGCACTGAGCCATCTCTCC...TCTTAGCTGAAGAGAGGCACAACTAAGCACTGGCATTGCTGTTGACCCTGGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| 3UTR CAA 90 bp | AGATCTGTTTGTCTTTGTCTCCTGGGATTAAAGGTTTGTACCACCTaGCCTGGATCTAAATTAAGCTGGGTAGGATCTTGCCCCAAATCC | + |
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Preference number: 2 (lower is better) Translates to: RSVCLCLLGLKVCTT*PGSKLSWVGSCPKS Trigger: GGATTTGGGGCAAGATCCTACCCAGCTTAATTTAGATCCAGGCAAGGTGGTACAAACCTTTAATCCCAGGAGACAAAGACAAACAGATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| 3UTR-3UTR GCA 90 bp | CTCTTCATGAATCTTAACCAAAGTCTCTGCTGGGCTTTTTCGAGACTTCTTTGTCAGGGTCAACAGCAATaGCAGTGCTTAGTTGTGCCT | + |
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Preference number: 2 (lower is better) Translates to: LFMNLNQSLCWAFSRLLCQGQQQ*QCLVVP Trigger: AGGCACAACTAAGCACTGGCATTGCTGTTGACCCTG...ACAAAGAAGTCTCGAAAAAGCCCAGCAGAGACTTTGGTTAAGATTCATGAAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| 3UTR CCA 72 bp | TTGTGCCTCTCTTCAGCTAAGAGCAGCAAGCGGGGCTaGAGAGATGGCTCAGTGCTTAAGAGCACCGTTCTT | + |
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Preference number: 3 (lower is better) Translates to: LCLSSAKSSKRG*RDGSVLKSTVL Trigger: AAGAACGGTGCTCTTAAGCACTGAGCCATCTCTCCAGCCCCGCTTGCTGCTCTTAGCTGAAGAGAGGCACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| 3UTR CCA 72 bp | GGTAGAGTCAGGATATCAAACACAGATCAGCAGCAGTaGCACTACCTAGCAGACACAGCCAAGCCTCAGCCC | + |
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Preference number: 3 (lower is better) Translates to: GRVRISNTDQQQ*HYLADTAKPQP Trigger: GGGCTGAGGCTTGGCTGTGTCTGCTAGGTAGTGCCACTGCTGCTGATCTGTGTTTGATATCCTGACTCTACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| 3UTR TCA 72 bp | GCTCAGTGCTTAAGAGCACCGTTCTTCCGAAGGTCCTaGGTTCAAATCCCAGCAACCACATGGTGGCTCACA | + |
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Preference number: 3 (lower is better) Translates to: AQCLRAPFFRRS*VQIPATTWWLT Trigger: TGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACGGTGCTCTTAAGCACTGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| 3UTR GCA 72 bp | TGCTCGTTGCTCTTCATGAATCTTAACCAAAGTCTCTaGTGGGCTTTTTCGAGACTTCTTTGTCAGTGCTGT | + |
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Preference number: 3 (lower is better) Translates to: CSLLFMNLNQSL*WAFSRLLCQCC Trigger: ACAGCACTGACAAAGAAGTCTCGAAAAAGCCCAGCAGAGACTTTGGTTAAGATTCATGAAGAGCAACGAGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS-3UTR TCA 90 bp | AGCCCAGGCTCTTCACTGAAACCTGTGTCCTCTGAGGATCATGGCCAGGTCTGCCCGCCGTCCTGGGGGTaGCTCAGAAGCCAGAAGATA | + |
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Preference number: 4 (lower is better) Translates to: SPGSSLKPVSSEDHGQVCPPSWG*LRSQKI Trigger: TATCTTCTGGCTTCTGAGTCACCCCCAGGACGGCGG...GCAGACCTGGCCATGATCCTCAGAGGACACAGGTTTCAGTGAAGAGCCTGGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS-3UTR GCA 90 bp | CTAGCAGACACAGCCAAGCCTCAGCCCAAGTCAGCAGAAAGGACCAGGGTCAACCTGGCGGAAGCCATCTaGTCTCTGACTCTGGGTACC | + |
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Preference number: 4 (lower is better) Translates to: LADTAKPQPKSAERTRVNLAEAI*SLTLGT Trigger: GGTACCCAGAGTCAGAGAGCAGATGGCTTCCGCCAG...GTTGACCCTGGTCCTTTCTGCTGACTTGGGCTGAGGCTTGGCTGTGTCTGCTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS-3UTR TCA 90 bp | GGCTCTTCACTGAAACCTGTGTCCTCTGAGGATCATGGCCAGGTCTGCCTTGAGTCTCACAGCCGTATGTaGACTGGAGGGTGTGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: GSSLKPVSSEDHGQVCLESHSRM*TGGCEG Trigger: GCCCTCACACCCTCCAGTTCACATACGGCTGTGAGA...CTCAAGGCAGACCTGGCCATGATCCTCAGAGGACACAGGTTTCAGTGAAGAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS-3UTR TCA 90 bp | AGCGGGGCTGGAGAGATGGCTCAGTGCTTAAGAGCACCGTTCTTCCGAAGGTCCCGGCTCAGTCACAGCTaGGTAACAGTAATGCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: SGAGEMAQCLRAPFFRRSRLSHS*VTVMQR Trigger: TCTCTGCATTACTGTTACTCAGCTGTGACTGAGCCG...GGACCTTCGGAAGAACGGTGCTCTTAAGCACTGAGCCATCTCTCCAGCCCCGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS-3UTR GCA 90 bp | CCAGGCTCTTCACTGAAACCTGTGTCCTCTGAGGATCATGGCCAGGTCTGCCTTGTCAGCACAAGGCTCTaGCTTCATGCTCCTGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: PGSSLKPVSSEDHGQVCLVSTRL*LHAPAV Trigger: GACAGCAGGAGCATGAAGGCAGAGCCTTGTGCTGAC...AAGGCAGACCTGGCCATGATCCTCAGAGGACACAGGTTTCAGTGAAGAGCCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS-3UTR CCA 90 bp | AGTTGTGCCTCTCTTCAGCTAAGAGCAGCAAGCGGGGCTGGAGAGATGGCTCAGACTGCCAATGCCCTGTaGTCCTGTTGTACCGCATCT | + |
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Preference number: 4 (lower is better) Translates to: SCASLQLRAASGAGEMAQTANAL*SCCTAS Trigger: AGATGCGGTACAACAGGACCACAGGGCATTGGCAGT...CTGAGCCATCTCTCCAGCCCCGCTTGCTGCTCTTAGCTGAAGAGAGGCACAACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS-3UTR TCA 90 bp | CAGGATATCAAACACAGATCAGCAGCAGTGGCACTACCTAGCAGACACAGCCAACCGCCGTCCTGGGGGTaGCTCAGAAGCCAGAAGATA | + |
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Preference number: 4 (lower is better) Translates to: QDIKHRSAAVALPSRHSQPPSWG*LRSQKI Trigger: TATCTTCTGGCTTCTGAGTCACCCCCAGGACGGCGG...TTGGCTGTGTCTGCTAGGTAGTGCCACTGCTGCTGATCTGTGTTTGATATCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS-3UTR TCA 90 bp | AGCCCAGGCTCTTCACTGAAACCTGTGTCCTCTGAGGATCATGGCCAGGTCTGCCGGCTCAGTCACAGCTaGGTAACAGTAATGCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: SPGSSLKPVSSEDHGQVCRLSHS*VTVMQR Trigger: TCTCTGCATTACTGTTACTCAGCTGTGACTGAGCCG...GCAGACCTGGCCATGATCCTCAGAGGACACAGGTTTCAGTGAAGAGCCTGGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS-3UTR GCA 90 bp | GGCTCAGTGCTTAAGAGCACCGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCGTCAGCACAAGGCTCTaGCTTCATGCTCCTGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: GSVLKSTVLPKVLSSNPSVSTRL*LHAPAV Trigger: GACAGCAGGAGCATGAAGGCAGAGCCTTGTGCTGAC...GCTGGGATTTGAACTCAGGACCTTCGGAAGAACGGTGCTCTTAAGCACTGAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS-3UTR TCA 90 bp | AGCAGAAAGGACCAGGGTCAACAGCAATGCCAGTGCTTAGTTGTGCCTCTCTTCGCCAGTTCTTTCTTCTaGCCTGCTTGCTGGCGGAAG | + |
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Preference number: 4 (lower is better) Translates to: SRKDQGQQQCQCLVVPLFASSFF*PACWRK Trigger: CTTCCGCCAGCAAGCAGGTCAGAAGAAAGAACTGGC...GAAGAGAGGCACAACTAAGCACTGGCATTGCTGTTGACCCTGGTCCTTTCTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174063.2 |
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| CDS-3UTR GCA 90 bp | GGCTCAGTGCTTAAGAGCACCGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAAGGCTCTGCCTTCATaGTCCTGCTGTCGTAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: GSVLKSTVLPKVLSSNPSKALPS*SCCRSG Trigger: TCCACTACGACAGCAGGAGCATGAAGGCAGAGCCTT...GCTGGGATTTGAACTCAGGACCTTCGGAAGAACGGTGCTCTTAAGCACTGAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS-3UTR GCA 90 bp | CCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTTCTTTCTTCTGACCTaGTTGCTGGCGGAAGCCATC | + |
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Preference number: 4 (lower is better) Translates to: PKVLSSNPSNHMVAHNHPFFLLT*LLAEAI Trigger: GATGGCTTCCGCCAGCAAGCAGGTCAGAAGAAAGAA...CGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174063.2 |
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| CDS-3UTR GCA 90 bp | CAAGTCAGCAGAAAGGACCAGGGTCAACAGCAATGCCAGTGCTTAGTTGTGCCTAAGGCTCTGCCTTCATaGTCCTGCTGTCGTAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: QVSRKDQGQQQCQCLVVPKALPS*SCCRSG Trigger: TCCACTACGACAGCAGGAGCATGAAGGCAGAGCCTT...AGGCACAACTAAGCACTGGCATTGCTGTTGACCCTGGTCCTTTCTGCTGACTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS-3UTR GCA 90 bp | GGCTCTTCACTGAAACCTGTGTCCTCTGAGGATCATGGCCAGGTCTGCCTTGAGCATTGTTTTCCCACTTaGGCTTGGTGTAGCCAGCAA | + |
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Preference number: 4 (lower is better) Translates to: GSSLKPVSSEDHGQVCLEHCFPT*AWCSQQ Trigger: TTGCTGGCTACACCAAGCGCAAGTGGGAAAACAATG...CTCAAGGCAGACCTGGCCATGATCCTCAGAGGACACAGGTTTCAGTGAAGAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS-3UTR GCA 90 bp | CCAGGCTCTTCACTGAAACCTGTGTCCTCTGAGGATCATGGCCAGGTCTGCCTTGTGGCTGCTATATATTaGATAGAGCCCAAGTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: PGSSLKPVSSEDHGQVCLVAAIY*IEPKSK Trigger: CTTGGACTTGGGCTCTATGCAATATATAGCAGCCAC...AAGGCAGACCTGGCCATGATCCTCAGAGGACACAGGTTTCAGTGAAGAGCCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS-3UTR GCA 90 bp | GGCTCTTCACTGAAACCTGTGTCCTCTGAGGATCATGGCCAGGTCTGCCTTGAGATGGTTAAGTATCTCTaGAGCCATAGGATGCACTCC | + |
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Preference number: 4 (lower is better) Translates to: GSSLKPVSSEDHGQVCLEMVKYL*SHRMHS Trigger: GGAGTGCATCCTATGGCTGCAGAGATACTTAACCAT...CTCAAGGCAGACCTGGCCATGATCCTCAGAGGACACAGGTTTCAGTGAAGAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS-3UTR TCA 90 bp | CTTAAGAGCACCGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGCCTCAGTCTCATGAGTaGAGTACTGTGCATTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: LKSTVLPKVLSSNPSNHMPQSHE*STVHFP Trigger: GGGAAAATGCACAGTACTTCACTCATGAGACTGAGG...CATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACGGTGCTCTTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS-3UTR CCA 90 bp | GGACCAGGGTCAACAGCAATGCCAGTGCTTAGTTGTGCCTCTCTTCAGCTAAGAAGTTCTTTCCTCCCATaGTTAAGTATCTCTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: GPGSTAMPVLSCASLQLRSSFLP*LSISAA Trigger: GGCTGCAGAGATACTTAACCATGGGAGGAAAGAACT...TCTTAGCTGAAGAGAGGCACAACTAAGCACTGGCATTGCTGTTGACCCTGGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS-3UTR GCA 90 bp | CAAGTCAGCAGAAAGGACCAGGGTCAACAGCAATGCCAGTGCTTAGTTGTGCCTAGCAATGAAGGTGGCTaGTATATATTGCATAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: QVSRKDQGQQQCQCLVVPSNEGG*YILHRA Trigger: GGCTCTATGCAATATATAGCAGCCACCTTCATTGCT...AGGCACAACTAAGCACTGGCATTGCTGTTGACCCTGGTCCTTTCTGCTGACTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS-3UTR TCA 90 bp | CAAGTCAGCAGAAAGGACCAGGGTCAACAGCAATGCCAGTGCTTAGTTGTGCCTAAAACCTCAGTCTCATaGGTGAAGTACTGTGCATTT | + |
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Preference number: 4 (lower is better) Translates to: QVSRKDQGQQQCQCLVVPKTSVS*VKYCAF Trigger: AAATGCACAGTACTTCACTCATGAGACTGAGGTTTT...AGGCACAACTAAGCACTGGCATTGCTGTTGACCCTGGTCCTTTCTGCTGACTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| 3UTR CAA 72 bp | CCTAGGCTGGCCTTGAATTTAGAGATCTGTTTGTCTTaGTCTCCTGGGATTAAAGGTTTGTACCACCTTGCC | + |
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Preference number: 4 (lower is better) Translates to: PRLALNLEICLS*SPGIKGLYHLA Trigger: GGCAAGGTGGTACAAACCTTTAATCCCAGGAGACAAAGACAAACAGATCTCTAAATTCAAGGCCAGCCTAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| 3UTR CAA 72 bp | TGTCTTTGTCTCCTGGGATTAAAGGTTTGTACCACCTaGCCTGGATCTAAATTAAGCTGGGTAGGATCTTGC | + |
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Preference number: 4 (lower is better) Translates to: CLCLLGLKVCTT*PGSKLSWVGSC Trigger: GCAAGATCCTACCCAGCTTAATTTAGATCCAGGCAAGGTGGTACAAACCTTTAATCCCAGGAGACAAAGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS-3UTR TCA 90 bp | TTGAGCTGTAAACTATTTACATTGTCCCTGGGTCCTGTCCTAGAGCCTCTCTTCAAAACCTCAGTCTCATaGGTGAAGTACTGTGCATTT | + |
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Preference number: 4 (lower is better) Translates to: LSCKLFTLSLGPVLEPLFKTSVS*VKYCAF Trigger: AAATGCACAGTACTTCACTCATGAGACTGAGGTTTT...GAAGAGAGGCTCTAGGACAGGACCCAGGGACAATGTAAATAGTTTACAGCTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174063.2 |
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| CDS TCA 90 bp | GCCAATGCCCTGTGGTCCTGTTGTACCGCATCTCACAGCCGTATGTaGACTGGAGGGTGTGAGGGCCTGCTTGCTGGCGGAAGCCATCTG | + |
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Preference number: 5 (lower is better) Translates to: ANALWSCCTASHSRM*TGGCEGLLAGGSHL Trigger: CAGATGGCTTCCGCCAGCAAGCAGGCCCTCACACCCTCCAGTTCACATACGGCTGTGAGATGCGGTACAACAGGACCACAGGGCATTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS-3UTR CAA 90 bp | CCAAGCCTCAGCCCAAGTCAGCAGAAAGGACCAGGGTCAACAGCAATGCCAGTGTCCAGCCAGTACTCATaGTTTTCCCACTTGCGCTTG | + |
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Preference number: 5 (lower is better) Translates to: PSLSPSQQKGPGSTAMPVSSQYS*FSHLRL Trigger: CAAGCGCAAGTGGGAAAACAATGAGTACTGGCTGGA...CACTGGCATTGCTGTTGACCCTGGTCCTTTCTGCTGACTTGGGCTGAGGCTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS GCA 90 bp | GCAGGCCAGTTCTTTCTTCTGACCTGCTTGCTGGCGGAAGCCATCTaGTCTCTGACTCTGGGTACCAGAGCTGTTGTAGTATTGCCGAAT | + |
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Preference number: 5 (lower is better) Translates to: AGQFFLLTCLLAEAI*SLTLGTRAVVVLPN Trigger: ATTCGGCAATACTACAACAGCTCTGGTACCCAGAGTCAGAGAGCAGATGGCTTCCGCCAGCAAGCAGGTCAGAAGAAAGAACTGGCCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174063.2 |
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| CDS GCA 90 bp | AGTGAAGTACTGTGCATTTTCCCTCAGCCAGTCAGCACAAGGCTCTaGCTTCATGCTCCTGCTGTCGTAGTGGATGAAGGGCTGGTTATC | + |
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Preference number: 5 (lower is better) Translates to: SEVLCIFPQPVSTRL*LHAPAVVVDEGLVI Trigger: GATAACCAGCCCTTCATCCACTACGACAGCAGGAGCATGAAGGCAGAGCCTTGTGCTGACTGGCTGAGGGAAAATGCACAGTACTTCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS-3UTR CAA 90 bp | CTAGCAGACACAGCCAAGCCTCAGCCCAAGTCAGCAGAAAGGACCAGGGTCAACAGAGCTGTTGTAGTATaGCCGAATGTTTCTCAGGCT | + |
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Preference number: 5 (lower is better) Translates to: LADTAKPQPKSAERTRVNRAVVV*PNVSQA Trigger: AGCCTGAGAAACATTCGGCAATACTACAACAGCTCT...GTTGACCCTGGTCCTTTCTGCTGACTTGGGCTGAGGCTTGGCTGTGTCTGCTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS-3UTR CAA 90 bp | GGGTCAACAGCAATGCCAGTGCTTAGTTGTGCCTCTCTTCAGCTAAGAGCAGCAGGACACTCAGCAAGGTaGCTTGAGGACTACAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: GSTAMPVLSCASLQLRAAGHSAR*LEDYSF Trigger: GAAGCTGTAGTCCTCAAGCAACCTTGCTGAGTGTCC...TGCTGCTCTTAGCTGAAGAGAGGCACAACTAAGCACTGGCATTGCTGTTGACCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS-3UTR CAA 90 bp | CTTAAGAGCACCGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGAGAGCTGTTGTAGTATaGCCGAATGTTTCTCAGGCT | + |
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Preference number: 5 (lower is better) Translates to: LKSTVLPKVLSSNPSNHMRAVVV*PNVSQA Trigger: AGCCTGAGAAACATTCGGCAATACTACAACAGCTCT...CATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACGGTGCTCTTAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS TCA 72 bp | CTGTGGTCCTGTTGTACCGCATCTCACAGCCGTATGTaGACTGGAGGGTGTGAGGGCCTGCTTGCTGGCGGA | + |
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Preference number: 6 (lower is better) Translates to: LWSCCTASHSRM*TGGCEGLLAGG Trigger: TCCGCCAGCAAGCAGGCCCTCACACCCTCCAGTTCACATACGGCTGTGAGATGCGGTACAACAGGACCACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS GCA 72 bp | GAGGGTGTGAGGGCCTGCTTGCTGGCGGAAGCCATCTaGTCTCTGACTCTGGGTACCAGAGCTGTTGTAGTA | + |
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Preference number: 6 (lower is better) Translates to: EGVRACLLAEAI*SLTLGTRAVVV Trigger: TACTACAACAGCTCTGGTACCCAGAGTCAGAGAGCAGATGGCTTCCGCCAGCAAGCAGGCCCTCACACCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113760.10 |
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| CDS GCA 72 bp | GGAACAGATGGAGCAGGCCAGTTCTTTCTTCTGACCTaGTTGCTGGCGGAAGCCATCTGCTCTCTGACTCTG | + |
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Preference number: 6 (lower is better) Translates to: GTDGAGQFFLLT*LLAEAICSLTL Trigger: CAGAGTCAGAGAGCAGATGGCTTCCGCCAGCAAGCAGGTCAGAAGAAAGAACTGGCCTGCTCCATCTGTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174063.2 |
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| CDS CAA 72 bp | ACAGATGGAGCAGGCCAGTTCTTTCTTCTGACCTGCTaGCTGGCGGAAGCCATCTGCTCTCTGACTCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: TDGAGQFFLLTC*LAEAICSLTLG Trigger: ACCCAGAGTCAGAGAGCAGATGGCTTCCGCCAGCAAGCAGGTCAGAAGAAAGAACTGGCCTGCTCCATCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174063.2 |
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| CDS GCA 72 bp | TTCTTTCTTCTGACCTGCTTGCTGGCGGAAGCCATCTaGTCTCTGACTCTGGGTACCAGAGCTGTTGTAGTA | + |
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Preference number: 6 (lower is better) Translates to: FFLLTCLLAEAI*SLTLGTRAVVV Trigger: TACTACAACAGCTCTGGTACCCAGAGTCAGAGAGCAGATGGCTTCCGCCAGCAAGCAGGTCAGAAGAAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174063.2 |
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| CDS GCA 72 bp | ATTGGTGAAAACCTCAGTCTCATGAGTGAAGTACTGTaGATTTTCCCTCAGCCAGTCAGCACAAGGCTCTGC | + |
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Preference number: 6 (lower is better) Translates to: IGENLSLMSEVL*IFPQPVSTRLC Trigger: GCAGAGCCTTGTGCTGACTGGCTGAGGGAAAATGCACAGTACTTCACTCATGAGACTGAGGTTTTCACCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS CAA 90 bp | GAAGCCATCTGCTCTCTGACTCTGGGTACCAGAGCTGTTGTAGTATaGCCGAATGTTTCTCAGGCTCAACTGGAAAATCTTCATCCGATT | + |
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Preference number: 6 (lower is better) Translates to: EAICSLTLGTRAVVV*PNVSQAQLENLHPI Trigger: AATCGGATGAAGATTTTCCAGTTGAGCCTGAGAAACATTCGGCAATACTACAACAGCTCTGGTACCCAGAGTCAGAGAGCAGATGGCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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| CDS CAA 72 bp | TGCTCTCTGACTCTGGGTACCAGAGCTGTTGTAGTATaGCCGAATGTTTCTCAGGCTCAACTGGAAAATCTT | + |
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Preference number: 6 (lower is better) Translates to: CSLTLGTRAVVV*PNVSQAQLENL Trigger: AAGATTTTCCAGTTGAGCCTGAGAAACATTCGGCAATACTACAACAGCTCTGGTACCCAGAGTCAGAGAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113760.10 ENSMUST00000174063.2 |
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