Pregenerated sensors for H2-T23 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067212Ensembl transcript IDs: ENSMUST00000102678.5
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCTGGACCTTCAGAAGAGCAGTCAGTGCTCTTACCCACTG | + |
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Preference number: 1 (lower is better) Translates to: ISLRMVVSHHVVAGI*TLDLQKSSQCSYPL Trigger: CAGTGGGTAAGAGCACTGACTGCTCTTCTGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| 3UTR CCA 90 bp | GAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTCAGAAGAGCAGTCAGTGCTCTTA | + |
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Preference number: 1 (lower is better) Translates to: ESDLVTDGCEPPCGC*DLNSGPSEEQSVLL Trigger: TAAGAGCACTGACTGCTCTTCTGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| 3UTR CAA 90 bp | GATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCTGGACCTTCAGAAGAGCAGTCAGTGCTCTTACCCACT | + |
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Preference number: 2 (lower is better) Translates to: DLVTDGCEPPCGCWD*NSGPSEEQSVLLPT Trigger: AGTGGGTAAGAGCACTGACTGCTCTTCTGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| 3UTR TCA 72 bp | CGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCTGGACCTTCAGAAGAGCAGTCAGTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: RMVVSHHVVAGI*TLDLQKSSQCS Trigger: AGAGCACTGACTGCTCTTCTGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| 3UTR CCA 72 bp | CTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTCAGAAGAGCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: LVTDGCEPPCGC*DLNSGPSEEQS Trigger: TGACTGCTCTTCTGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR TCA 90 bp | GAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGTCGGGACTGTGGCGCTaGCCAGCAGCTGAAGCAAGT | + |
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Preference number: 4 (lower is better) Translates to: ESDLVTDGCEPPCGCWDLSGLWR*PAAEAS Trigger: ACTTGCTTCAGCTGCTGGTCAGCGCCACAGTCCCGA...CAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR GCA 90 bp | AGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTAGGACCTTGCAGGTATaGCCTCTGTTGGTGGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: RRGSQISLRMVVSHHVVARTLQV*PLLVGL Trigger: GAGGCCCACCAACAGAGGGCATACCTGCAAGGTCCT...AGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR CCA 90 bp | AGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTAGGTATGCCCTCTGTTaGTGGGCCTCATCGACTGCC | + |
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Preference number: 4 (lower is better) Translates to: RRGSQISLRMVVSHHVVARYALC*WASSTA Trigger: GGCAGTCGATGAGGCCCACCAACAGAGGGCATACCT...AGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR CCA 90 bp | CTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGAGTTGGAGACAGTGGATaGAGGAGGCTCCCATCTCAG | + |
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Preference number: 4 (lower is better) Translates to: LVTDGCEPPCGCWDLNSGVGDSG*RRLPSQ Trigger: CTGAGATGGGAGCCTCCTCCATCCACTGTCTCCAAC...TCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR CCA 90 bp | AGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTCCATGTTGGAGACAGTaGATGGAGGAGGCTCCCATC | + |
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Preference number: 4 (lower is better) Translates to: RRGSQISLRMVVSHHVVAPCWRQ*MEEAPI Trigger: GATGGGAGCCTCCTCCATCCACTGTCTCCAACATGG...AGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR CCA 90 bp | AGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGCCAGTCAGAGGTCTaGAAGCTCTTGCTGCCTAGA | + |
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Preference number: 4 (lower is better) Translates to: RRGSQISLRMVVSHHVVAGQSEV*KLLLPR Trigger: TCTAGGCAGCAAGAGCTTCCAGACCTCTGACTGGCC...AGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR TCA 90 bp | AGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTTCCTCAGGTTTACTCTaGAGTTCCTCCCCATGTCCC | + |
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Preference number: 4 (lower is better) Translates to: RRGSQISLRMVVSHHVVASSGLL*SSSPCP Trigger: GGGACATGGGGAGGAACTTCAGAGTAAACCTGAGGA...AGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR CCA 90 bp | CTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGAAGCCGTAGGTATCTATaGAGCCACTCCACGCAAGGA | + |
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Preference number: 4 (lower is better) Translates to: LVTDGCEPPCGCWDLNSGSRRYL*SHSTQG Trigger: TCCTTGCGTGGAGTGGCTCCATAGATACCTACGGCT...TCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR TCA 90 bp | GAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGCTCATCGACTGCCTCTaGCTTGTGCTTAGAGATCTG | + |
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Preference number: 4 (lower is better) Translates to: ESDLVTDGCEPPCGCWDLLIDCL*LVLRDL Trigger: CAGATCTCTAAGCACAAGTCAGAGGCAGTCGATGAG...CAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR GCA 90 bp | AGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTTCTGGAAGCTCTTGCTaGCTAGAACATGAGCATAGC | + |
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Preference number: 4 (lower is better) Translates to: RRGSQISLRMVVSHHVVASGSSC*LEHEHS Trigger: GCTATGCTCATGTTCTAGGCAGCAAGAGCTTCCAGA...AGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR GCA 90 bp | GAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAGGTCTGGAAGCTCTTaGTGCCTAGAACATGAGCAT | + |
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Preference number: 4 (lower is better) Translates to: ESDLVTDGCEPPCGCWDLRSGSS*CLEHEH Trigger: ATGCTCATGTTCTAGGCAGCAAGAGCTTCCAGACCT...CAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR TCA 90 bp | AGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTCAACCAGAACAGCTATaGTTACCATGTTGGAGACAG | + |
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Preference number: 4 (lower is better) Translates to: RRGSQISLRMVVSHHVVAQPEQL*LPCWRQ Trigger: CTGTCTCCAACATGGTAATCATAGCTGTTCTGGTTG...AGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR CAA 90 bp | AGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTTCGACTGCCTCTGACTaGTGCTTAGAGATCTGTGAG | + |
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Preference number: 5 (lower is better) Translates to: RRGSQISLRMVVSHHVVASTASD*CLEICE Trigger: CTCACAGATCTCTAAGCACAAGTCAGAGGCAGTCGA...AGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS-3UTR CAA 90 bp | GAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGGCTATGATTACCATGTaGGAGACAGTGGATGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: ESDLVTDGCEPPCGCWDLAMITM*ETVDGG Trigger: TCCTCCATCCACTGTCTCCAACATGGTAATCATAGC...CAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS TCA 72 bp | GCGAGTGTGGGCTACTCTGGGTCGGGACTGTGGCGCTaGCCAGCAGCTGAAGCAAGTGGGCAAAAAGCAACA | + |
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Preference number: 6 (lower is better) Translates to: ASVGYSGSGLWR*PAAEASGQKAT Trigger: TGTTGCTTTTTGCCCACTTGCTTCAGCTGCTGGTCAGCGCCACAGTCCCGACCCAGAGTAGCCCACACTCGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS CCA 72 bp | TCCACGCAAGGACCTTGCAGGTATGCCCTCTGTTGGTaGGCCTCATCGACTGCCTCTGACTTGTGCTTAGAG | + |
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Preference number: 6 (lower is better) Translates to: STQGPCRYALCW*ASSTASDLCLE Trigger: CTCTAAGCACAAGTCAGAGGCAGTCGATGAGGCCCACCAACAGAGGGCATACCTGCAAGGTCCTTGCGTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS CAA 72 bp | GCCCTCTGTTGGTGGGCCTCATCGACTGCCTCTGACTaGTGCTTAGAGATCTGTGAGGCTATGTCATTCGCG | + |
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Preference number: 6 (lower is better) Translates to: ALCWWASSTASD*CLEICEAMSFA Trigger: CGCGAATGACATAGCCTCACAGATCTCTAAGCACAAGTCAGAGGCAGTCGATGAGGCCCACCAACAGAGGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS CAA 72 bp | GCTCCAAGGACAACCAGAACAGCTATGATTACCATGTaGGAGACAGTGGATGGAGGAGGCTCCCATCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: APRTTRTAMITM*ETVDGGGSHLR Trigger: CCTGAGATGGGAGCCTCCTCCATCCACTGTCTCCAACATGGTAATCATAGCTGTTCTGGTTGTCCTTGGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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| CDS GCA 72 bp | CCTTCTGAGGCCAGTCAGAGGTCTGGAAGCTCTTGCTaGCTAGAACATGAGCATAGCATCCTTTTACACCTA | + |
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Preference number: 6 (lower is better) Translates to: PSEASQRSGSSC*LEHEHSILLHL Trigger: TAGGTGTAAAAGGATGCTATGCTCATGTTCTAGGCAGCAAGAGCTTCCAGACCTCTGACTGGCCTCAGAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102678.5 |
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