Pregenerated sensors for H2-T22 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056116Ensembl transcript IDs: ENSMUST00000058801.15, ENSMUST00000077960.7, ENSMUST00000080015.12, ENSMUST00000173280.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTCTGCTGCTCCCAGTTATCTGCTTCCTCCTGCTCCAGCCAGGGTaGCATCCTCGGAGTCTCCTCCTTGCTGCTGAAGCGCAGGACCTG | + |
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Preference number: 1 (lower is better) Translates to: SLLLPVICFLLLQPG*HPRSLLLAAEAQDL Trigger: CAGGTCCTGCGCTTCAGCAGCAAGGAGGAGACTCCGAGGATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATAACTGGGAGCAGCAGACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR GCA 90 bp | ATTGTGACTATACGAGTCTGCTGCTCCCAGTTATCTGCTTCCTCCTaGTCCAGCCAGGGTGCCATCCTCGGAGTCTCCTCCTTGCTGCTG | + |
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Preference number: 1 (lower is better) Translates to: IVTIRVCCSQLSASS*SSQGAILGVSSLLL Trigger: CAGCAGCAAGGAGGAGACTCCGAGGATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATAACTGGGAGCAGCAGACTCGTATAGTCACAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR GCA 90 bp | CTGTCCTTGAATTGTGACTATACGAGTCTGCTGCTCCCAGTTATCTaGTTCCTCCTGCTCCAGCCAGGGTGCCATCCTCGGAGTCTCCTC | + |
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Preference number: 1 (lower is better) Translates to: LSLNCDYTSLLLPVI*FLLLQPGCHPRSLL Trigger: GAGGAGACTCCGAGGATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATAACTGGGAGCAGCAGACTCGTATAGTCACAATTCAAGGACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR CCA 90 bp | CAAACCCCCATCTCCTCATCATCCACAACAGTCTTGCTAGAGTCTTaGGGACTGTCTCTGCCTGCTTCTTGGGTGTCACGCCTTCCTCTC | + |
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Preference number: 1 (lower is better) Translates to: QTPISSSSTTVLLES*GLSLPASWVSRLPL Trigger: GAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGTGGATGATGAGGAGATGGGGGTTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR CCA 90 bp | ACAACAGTCTTGCTAGAGTCTTGGGGACTGTCTCTGCCTGCTTCTTaGGTGTCACGCCTTCCTCTCCCACCTGCATTCTTCTTCATGCAT | + |
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Preference number: 1 (lower is better) Translates to: TTVLLESWGLSLPAS*VSRLPLPPAFFFMH Trigger: ATGCATGAAGAAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR-3UTR GCA 90 bp | TGGGGACTGTCTCTGCCTGCTTCTTGGGTGTCACGCCTTCCTCTCCCACCTGCACTGCTCCAGCCAGGGTaGCATCCTCGGAGTCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: WGLSLPASWVSRLPLPPALLQPG*HPRSLL Trigger: GAGGAGACTCCGAGGATGGCACCCTGGCTGGAGCAG...TGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR-3UTR TCA 90 bp | CCAGCCACTCAAAGGGGCATCTCCCAGATGATCCTAAATCCAGTCAAGGTGACACCTTCAGGTCTGGGGTaGCGGGTCACATGTGCCTTT | + |
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Preference number: 2 (lower is better) Translates to: PATQRGISQMILNPVKVTPSGLG*RVTCAF Trigger: AAAGGCACATGTGACCCGTCACCCCAGACCTGAAGG...TGTCACCTTGACTGGATTTAGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR CAA 90 bp | CACAACAGTCTTGCTAGAGTCTTGGGGACTGTCTCTGCCTGCTTCTaGGGTGTCACGCCTTCCTCTCCCACCTGCATTCTTCTTCATGCA | + |
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Preference number: 2 (lower is better) Translates to: HNSLARVLGTVSACF*GVTPSSPTCILLHA Trigger: TGCATGAAGAAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR-3UTR GCA 90 bp | CCAGCCACTCAAAGGGGCATCTCCCAGATGATCCTAAATCCAGTCAAGGTGACACTGCTCCCAGTTATCTaGTTCCTCCTGCTCCAGCCA | + |
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Preference number: 2 (lower is better) Translates to: PATQRGISQMILNPVKVTLLPVI*FLLLQP Trigger: TGGCTGGAGCAGGAGGAAGCAGATAACTGGGAGCAG...TGTCACCTTGACTGGATTTAGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR-3UTR TCA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGCTTGAGCCAGAAAGGTaGGATGTGTTTCTGTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQLEPER*DVFLSR Trigger: CCTGGACAGAAACACATCTCACCTTTCTGGCTCAAG...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 ENSMUST00000173280.2 |
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| 3UTR-3UTR GCA 90 bp | GCCTGCTTCTTGGGTGTCACGCCTTCCTCTCCCACCTGCATTCTTCTTCATGCAAGATGTGAGGTACAGTaGTGTTTCCCACTGTACAGG | + |
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Preference number: 2 (lower is better) Translates to: ACFLGVTPSSPTCILLHARCEVQ*CFPLYR Trigger: CCTGTACAGTGGGAAACAGCACTGTACCTCACATCT...TGCATGAAGAAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR-3UTR TCA 90 bp | CCAGCCACTCAAAGGGGCATCTCCCAGATGATCCTAAATCCAGTCAAGGTGACACTTGAGCCAGAAAGGTaGGATGTGTTTCTGTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: PATQRGISQMILNPVKVTLEPER*DVFLSR Trigger: CCTGGACAGAAACACATCTCACCTTTCTGGCTCAAG...TGTCACCTTGACTGGATTTAGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR-3UTR TCA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAGGTGTTCAGATCCTTaGGCCAGAAAGGTGAGATGT | + |
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Preference number: 2 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQRCSDP*ARKVRC Trigger: ACATCTCACCTTTCTGGCTCAAGGATCTGAACACCT...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 ENSMUST00000173280.2 |
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| 3UTR-3UTR GCA 90 bp | GCCTGCTTCTTGGGTGTCACGCCTTCCTCTCCCACCTGCATTCTTCTTCATGCATTTTCCAGGTATTTCTaGAGCAGATCTGAGCAGTGG | + |
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Preference number: 2 (lower is better) Translates to: ACFLGVTPSSPTCILLHAFSRYF*SRSEQW Trigger: CCACTGCTCAGATCTGCTGCAGAAATACCTGGAAAA...TGCATGAAGAAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR CCA 72 bp | GTCCCTGAAGCACTGAGGGTAGGACCCAGAGTGCTGTaGGTGAGAGGAGGGAGCTTTGTGTCCCTGGGACCC | + |
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Preference number: 3 (lower is better) Translates to: VPEALRVGPRVL*VRGGSFVSLGP Trigger: GGGTCCCAGGGACACAAAGCTCCCTCCTCTCACCCACAGCACTCTGGGTCCTACCCTCAGTGCTTCAGGGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 ENSMUST00000173280.2 |
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| 3UTR GCA 72 bp | CTCCCAGTTATCTGCTTCCTCCTGCTCCAGCCAGGGTaGCATCCTCGGAGTCTCCTCCTTGCTGCTGAAGCG | + |
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Preference number: 3 (lower is better) Translates to: LPVICFLLLQPG*HPRSLLLAAEA Trigger: CGCTTCAGCAGCAAGGAGGAGACTCCGAGGATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATAACTGGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR-3UTR CAA 90 bp | GCTAGAGTCTTGGGGACTGTCTCTGCCTGCTTCTTGGGTGTCACGCCTTCCTCTCTCGGAGTCTCCTCCTaGCTGCTGAAGCGCAGGACC | + |
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Preference number: 3 (lower is better) Translates to: ARVLGTVSACFLGVTPSSLGVSS*LLKRRT Trigger: GGTCCTGCGCTTCAGCAGCAAGGAGGAGACTCCGAG...AGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR GCA 72 bp | ATACGAGTCTGCTGCTCCCAGTTATCTGCTTCCTCCTaGTCCAGCCAGGGTGCCATCCTCGGAGTCTCCTCC | + |
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Preference number: 3 (lower is better) Translates to: IRVCCSQLSASS*SSQGAILGVSS Trigger: GGAGGAGACTCCGAGGATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATAACTGGGAGCAGCAGACTCGTAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR GCA 72 bp | AACAGTCTTGCTAGAGTCTTGGGGACTGTCTCTGCCTaGTTCTTGGGTGTCACGCCTTCCTCTCCCACCTGC | + |
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Preference number: 3 (lower is better) Translates to: NSLARVLGTVSA*FLGVTPSSPTC Trigger: GCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR GCA 72 bp | AATTGTGACTATACGAGTCTGCTGCTCCCAGTTATCTaGTTCCTCCTGCTCCAGCCAGGGTGCCATCCTCGG | + |
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Preference number: 3 (lower is better) Translates to: NCDYTSLLLPVI*FLLLQPGCHPR Trigger: CCGAGGATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATAACTGGGAGCAGCAGACTCGTATAGTCACAATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR CCA 72 bp | TTGCTAGAGTCTTGGGGACTGTCTCTGCCTGCTTCTTaGGTGTCACGCCTTCCTCTCCCACCTGCATTCTTC | + |
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Preference number: 3 (lower is better) Translates to: LLESWGLSLPAS*VSRLPLPPAFF Trigger: GAAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR-3UTR CAA 90 bp | GCCTGCTTCTTGGGTGTCACGCCTTCCTCTCCCACCTGCATTCTTCTTCATGCACAGGTGTTCAGATCCTaGAGCCAGAAAGGTGAGATG | + |
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Preference number: 3 (lower is better) Translates to: ACFLGVTPSSPTCILLHAQVFRS*SQKGEM Trigger: CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTG...TGCATGAAGAAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR GCA 72 bp | CTTTGTGTCCCTGGGACCCTTGACAAGGTGACAAAATaGCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTG | + |
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Preference number: 3 (lower is better) Translates to: LCVPGTLDKVTK*LTRSRVGKRQV Trigger: CACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCATTTTGTCACCTTGTCAAGGGTCCCAGGGACACAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 ENSMUST00000173280.2 |
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| 3UTR GCA 72 bp | GCCTGCTTCTTGGGTGTCACGCCTTCCTCTCCCACCTaGATTCTTCTTCATGCATATGCAAACCACACAGAG | + |
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Preference number: 3 (lower is better) Translates to: ACFLGVTPSSPT*ILLHAYANHTE Trigger: CTCTGTGTGGTTTGCATATGCATGAAGAAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR CCA 72 bp | GTGAGGTACAGTGCTGTTTCCCACTGTACAGGAACTTaGGTTTTCGTTCAGGGTGGGGAGATCCTCGCTATC | + |
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Preference number: 3 (lower is better) Translates to: VRYSAVSHCTGT*VFVQGGEILAI Trigger: GATAGCGAGGATCTCCCCACCCTGAACGAAAACCCAAGTTCCTGTACAGTGGGAAACAGCACTGTACCTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR CCA 72 bp | ATCTCCTCATCATCCACAACAGTCTTGCTAGAGTCTTaGGGACTGTCTCTGCCTGCTTCTTGGGTGTCACGC | + |
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Preference number: 3 (lower is better) Translates to: ISSSSTTVLLES*GLSLPASWVSR Trigger: GCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGTGGATGATGAGGAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR-3UTR CAA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGCAGGTGTTCAGATCCTaGAGCCAGAAAGGTGAGATG | + |
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Preference number: 3 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQQVFRS*SQKGEM Trigger: CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTG...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 ENSMUST00000173280.2 |
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| 3UTR-3UTR CAA 90 bp | CCAGCCACTCAAAGGGGCATCTCCCAGATGATCCTAAATCCAGTCAAGGTGACACCACTGTACAGGAACTaGGGTTTTCGTTCAGGGTGG | + |
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Preference number: 3 (lower is better) Translates to: PATQRGISQMILNPVKVTPLYRN*GFRSGW Trigger: CCACCCTGAACGAAAACCCAAGTTCCTGTACAGTGG...TGTCACCTTGACTGGATTTAGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR-3UTR CAA 90 bp | CCAGCCACTCAAAGGGGCATCTCCCAGATGATCCTAAATCCAGTCAAGGTGACACCAAATCCAAGGCTTTaGGTACCATGCAGGCTCCCA | + |
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Preference number: 3 (lower is better) Translates to: PATQRGISQMILNPVKVTPNPRL*VPCRLP Trigger: TGGGAGCCTGCATGGTACCAAAAGCCTTGGATTTGG...TGTCACCTTGACTGGATTTAGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR-3UTR CAA 90 bp | CAGGACTTAATCTTCCAAAAGCAAACCCCCATCTCCTCATCATCCACAACAGTCGGGTCACATGTGCCTTaGGAGGGTCTGAACGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: QDLIFQKQTPISSSSTTVGSHVP*EGLNAA Trigger: TGCTGCGTTCAGACCCTCCAAAGGCACATGTGACCC...GACTGTTGTGGATGATGAGGAGATGGGGGTTTGCTTTTGGAAGATTAAGTCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR GCA 72 bp | AGCCTTGCAGCCACTGTAGTGTGTGAGAGTCGTCCATaGTCTTGTTGTAAAAATGAACCAGGGTCATCAGAT | + |
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Preference number: 3 (lower is better) Translates to: SLAATVVCESRP*SCCKNEPGSSD Trigger: ATCTGATGACCCTGGTTCATTTTTACAACAAGAGCATGGACGACTCTCACACACTACAGTGGCTGCAAGGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR TCA 72 bp | CTTTTCTGCATCAAAGCCATTGATCCCAATTTGACCTaGTTAAATGTCCCTGAAGCACTGAGGGTAGGACCC | + |
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Preference number: 3 (lower is better) Translates to: LFCIKAIDPNLT*LNVPEALRVGP Trigger: GGGTCCTACCCTCAGTGCTTCAGGGACATTTAATCAGGTCAAATTGGGATCAATGGCTTTGATGCAGAAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 ENSMUST00000173280.2 |
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| 3UTR CCA 72 bp | GACAGTAAAGACTCGCCAACTGAAGTTCCTGGGGAGTaGCCTAGACAAGTTTTACAGGACTTAATCTTCCAA | + |
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Preference number: 3 (lower is better) Translates to: DSKDSPTEVPGE*PRQVLQDLIFQ Trigger: TTGGAAGATTAAGTCCTGTAAAACTTGTCTAGGCCACTCCCCAGGAACTTCAGTTGGCGAGTCTTTACTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| 3UTR TCA 72 bp | TCATCAGATTCCTTTCAGACAGCTGTCCTTGAATTGTaGCTATACGAGTCTGCTGCTCCCAGTTATCTGCTT | + |
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Preference number: 3 (lower is better) Translates to: SSDSFQTAVLEL*LYESAAPSYLL Trigger: AAGCAGATAACTGGGAGCAGCAGACTCGTATAGTCACAATTCAAGGACAGCTGTCTGAAAGGAATCTGATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| CDS-3UTR CCA 90 bp | GCCGATCTGGCTCCACATCGCAGCCTTGCAGCCACTGTAGTGTGTGAGAGTCGTGAGTCCAGGATGGTCTaGCATCCAGCTGCAGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: ADLAPHRSLAATVVCESRESRMV*HPAAGE Trigger: TTCTCCTGCAGCTGGATGCCAGACCATCCTGGACTC...ACGACTCTCACACACTACAGTGGCTGCAAGGCTGCGATGTGGAGCCAGATCGGC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| CDS-3UTR TCA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGCCTTCAGGTCTGGGGTaGCGGGTCACATGTGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQPSGLG*RVTCAF Trigger: AAAGGCACATGTGACCCGTCACCCCAGACCTGAAGG...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR TCA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGCCCAACACCTCAGGGTaGCATCACCTTCAGGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMPNTSG*HHLQVW Trigger: CCAGACCTGAAGGTGATGTCACCCTGAGGTGTTGGG...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR TCA 90 bp | AGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGCCCAACACCTCAGGGTaGCATCACCTTCAGGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: RSRVGKRQVFRSLSQKGEPNTSG*HHLQVW Trigger: CCAGACCTGAAGGTGATGTCACCCTGAGGTGTTGGG...CTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR GCA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGTTATCTGCTTCCTCCTaGTCCAGCCAGGGTGCCATC | + |
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Preference number: 4 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQLSASS*SSQGAI Trigger: GATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATAA...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CCA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGGAGTCCAGGATGGTCTaGCATCCAGCTGCAGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQESRMV*HPAAGE Trigger: TTCTCCTGCAGCTGGATGCCAGACCATCCTGGACTC...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 ENSMUST00000173280.2 |
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| CDS-3UTR CCA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGGATCCGAGTCCAGGATaGTCTGGCATCCAGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMDPSPG*SGIQLQ Trigger: CTGCAGCTGGATGCCAGACCATCCTGGACTCGGATC...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 ENSMUST00000173280.2 |
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| CDS-3UTR GCA 90 bp | AGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGTTATCTGCTTCCTCCTaGTCCAGCCAGGGTGCCATC | + |
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Preference number: 4 (lower is better) Translates to: RSRVGKRQVFRSLSQKGELSASS*SSQGAI Trigger: GATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATAA...CTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR GCA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGTTATCTGCTTCCTCCTaGTCCAGCCAGGGTGCCATC | + |
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Preference number: 4 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMLSASS*SSQGAI Trigger: GATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATAA...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR GCA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGCTGCTCCCAGTTATCTaGTTCCTCCTGCTCCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMLLPVI*FLLLQP Trigger: TGGCTGGAGCAGGAGGAAGCAGATAACTGGGAGCAG...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR GCA 90 bp | AGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGCTGCTCCCAGTTATCTaGTTCCTCCTGCTCCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: RSRVGKRQVFRSLSQKGELLPVI*FLLLQP Trigger: TGGCTGGAGCAGGAGGAAGCAGATAACTGGGAGCAG...CTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CCA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGGAGTCCAGGATGGTCTaGCATCCAGCTGCAGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMESRMV*HPAAGE Trigger: TTCTCCTGCAGCTGGATGCCAGACCATCCTGGACTC...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 ENSMUST00000173280.2 |
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| CDS-3UTR CCA 90 bp | AGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGGAGTCCAGGATGGTCTaGCATCCAGCTGCAGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: RSRVGKRQVFRSLSQKGEESRMV*HPAAGE Trigger: TTCTCCTGCAGCTGGATGCCAGACCATCCTGGACTC...CTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 ENSMUST00000173280.2 |
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| CDS-3UTR CCA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGCACTGTACAGGAACTTaGGTTTTCGTTCAGGGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQHCTGT*VFVQGG Trigger: CCCACCCTGAACGAAAACCCAAGTTCCTGTACAGTG...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR GCA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAGATGTGAGGTACAGTaGTGTTTCCCACTGTACAGG | + |
|
Preference number: 4 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQRCEVQ*CFPLYR Trigger: CCTGTACAGTGGGAAACAGCACTGTACCTCACATCT...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CCA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGCACTGTACAGGAACTTaGGTTTTCGTTCAGGGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMHCTGT*VFVQGG Trigger: CCCACCCTGAACGAAAACCCAAGTTCCTGTACAGTG...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CCA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGGAAGTTCCTGGGGAGTaGCCTAGACAAGTTTTACAG | + |
|
Preference number: 4 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQEVPGE*PRQVLQ Trigger: CTGTAAAACTTGTCTAGGCCACTCCCCAGGAACTTC...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| 3UTR CAA 72 bp | AGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTaGAGCCAGAAAGGTGAGATGTGTTTCTGTCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: RSRVGKRQVFRS*SQKGEMCFCPG Trigger: CCCTGGACAGAAACACATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 ENSMUST00000173280.2 |
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| 3UTR CAA 72 bp | TGTGAGGTACAGTGCTGTTTCCCACTGTACAGGAACTaGGGTTTTCGTTCAGGGTGGGGAGATCCTCGCTAT | + |
|
Preference number: 4 (lower is better) Translates to: CEVQCCFPLYRN*GFRSGWGDPRY Trigger: ATAGCGAGGATCTCCCCACCCTGAACGAAAACCCAAGTTCCTGTACAGTGGGAAACAGCACTGTACCTCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| CDS-3UTR TCA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGTCAGACAGCTGTCCTTaGATTGTGACTATACGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQSDSCP*IVTIRV Trigger: GACTCGTATAGTCACAATTCAAGGACAGCTGTCTGA...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR GCA 90 bp | AGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGACTATACGAGTCTGCTaGTCCCAGTTATCTGCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: RSRVGKRQVFRSLSQKGETIRVC*SQLSAS Trigger: GGAAGCAGATAACTGGGAGCAGCAGACTCGTATAGT...CTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR GCA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGACTATACGAGTCTGCTaGTCCCAGTTATCTGCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMTIRVC*SQLSAS Trigger: GGAAGCAGATAACTGGGAGCAGCAGACTCGTATAGT...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR GCA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGAGATGTGAGGTACAGTaGTGTTTCCCACTGTACAGG | + |
|
Preference number: 4 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMRCEVQ*CFPLYR Trigger: CCTGTACAGTGGGAAACAGCACTGTACCTCACATCT...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR GCA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGCCTTCCTCTCCCACCTaGATTCTTCTTCATGCATAT | + |
|
Preference number: 4 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQPSSPT*ILLHAY Trigger: ATATGCATGAAGAAGAATGCAGGTGGGAGAGGAAGG...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CCA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGGAAGTTCCTGGGGAGTaGCCTAGACAAGTTTTACAG | + |
|
Preference number: 4 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMEVPGE*PRQVLQ Trigger: CTGTAAAACTTGTCTAGGCCACTCCCCAGGAACTTC...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR TCA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGTCAGACAGCTGTCCTTaGATTGTGACTATACGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMSDSCP*IVTIRV Trigger: GACTCGTATAGTCACAATTCAAGGACAGCTGTCTGA...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR GCA 90 bp | AGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGCCTTCCTCTCCCACCTaGATTCTTCTTCATGCATAT | + |
|
Preference number: 4 (lower is better) Translates to: RSRVGKRQVFRSLSQKGEPSSPT*ILLHAY Trigger: ATATGCATGAAGAAGAATGCAGGTGGGAGAGGAAGG...CTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS CCA 90 bp | GGGACACAGCGGTGTAGAAATACCCAAAGGGATCCGAGTCCAGGATaGTCTGGCATCCAGCTGCAGGAGAAGGGCGCAGACCACAGCGGC | + |
|
Preference number: 5 (lower is better) Translates to: GTQRCRNTQRDPSPG*SGIQLQEKGADHSG Trigger: GCCGCTGTGGTCTGCGCCCTTCTCCTGCAGCTGGATGCCAGACCATCCTGGACTCGGATCCCTTTGGGTATTTCTACACCGCTGTGTCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173280.2 |
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| CDS-3UTR CAA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGCTCGGAGTCTCCTCCTaGCTGCTGAAGCGCAGGACC | + |
|
Preference number: 5 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMLGVSS*LLKRRT Trigger: GGTCCTGCGCTTCAGCAGCAAGGAGGAGACTCCGAG...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CAA 90 bp | AGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGCTCGGAGTCTCCTCCTaGCTGCTGAAGCGCAGGACC | + |
|
Preference number: 5 (lower is better) Translates to: RSRVGKRQVFRSLSQKGELGVSS*LLKRRT Trigger: GGTCCTGCGCTTCAGCAGCAAGGAGGAGACTCCGAG...CTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CAA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGGGGTCACATGTGCCTTaGGAGGGTCTGAACGCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQGSHVP*EGLNAA Trigger: TGCTGCGTTCAGACCCTCCAAAGGCACATGTGACCC...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CAA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGGTCTCTGCCTGCTTCTaGGGTGTCACGCCTTCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQVSACF*GVTPSS Trigger: AGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGAC...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS GCA 90 bp | ATCATCCACAACAGTCTTGCTAGAGTCTTGGGGACTGTCTCTGCCTaGTTCTTGGGTGTCACGCCTTCCTCTCCCACCCCATCTCAGGAT | + |
|
Preference number: 5 (lower is better) Translates to: IIHNSLARVLGTVSA*FLGVTPSSPTPSQD Trigger: ATCCTGAGATGGGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGTGGATGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058801.15 |
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| CDS-3UTR CAA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGGGGTCACATGTGCCTTaGGAGGGTCTGAACGCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMGSHVP*EGLNAA Trigger: TGCTGCGTTCAGACCCTCCAAAGGCACATGTGACCC...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CAA 90 bp | AGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGGTCTCTGCCTGCTTCTaGGGTGTCACGCCTTCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: RSRVGKRQVFRSLSQKGEVSACF*GVTPSS Trigger: AGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGAC...CTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CAA 90 bp | TGCCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAGTCTTGCTAGAGTCTaGGGGACTGTCTCTGCCTGC | + |
|
Preference number: 5 (lower is better) Translates to: CLTRSRVGKRQVFRSLSQSLARV*GTVSAC Trigger: GCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACT...CTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CAA 90 bp | AGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGAGTCTTGCTAGAGTCTaGGGGACTGTCTCTGCCTGC | + |
|
Preference number: 5 (lower is better) Translates to: RSRVGKRQVFRSLSQKGESLARV*GTVSAC Trigger: GCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACT...CTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CAA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGAGTCTTGCTAGAGTCTaGGGGACTGTCTCTGCCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMSLARV*GTVSAC Trigger: GCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACT...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CAA 90 bp | AGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGCCACTGTACAGGAACTaGGGTTTTCGTTCAGGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: RSRVGKRQVFRSLSQKGEPLYRN*GFRSGW Trigger: CCACCCTGAACGAAAACCCAAGTTCCTGTACAGTGG...CTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058801.15 ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CAA 90 bp | AGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGATGCCAAATCCAAGGCTTTaGGTACCATGCAGGCTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: SRVGKRQVFRSLSQKGEMPNPRL*VPCRLP Trigger: TGGGAGCCTGCATGGTACCAAAAGCCTTGGATTTGG...CATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS-3UTR CAA 90 bp | AGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCCTTGAGCCAGAAAGGTGAGCCAAATCCAAGGCTTTaGGTACCATGCAGGCTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: RSRVGKRQVFRSLSQKGEPNPRL*VPCRLP Trigger: TGGGAGCCTGCATGGTACCAAAAGCCTTGGATTTGG...CTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077960.7 ENSMUST00000080015.12 |
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| CDS CAA 90 bp | CACAACAGTCTTGCTAGAGTCTTGGGGACTGTCTCTGCCTGCTTCTaGGGTGTCACGCCTTCCTCTCCCACCCCATCTCAGGATGAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: HNSLARVLGTVSACF*GVTPSSPTPSQDEG Trigger: CCCCTCATCCTGAGATGGGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058801.15 |
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| CDS CAA 72 bp | CTTGCTAGAGTCTTGGGGACTGTCTCTGCCTGCTTCTaGGGTGTCACGCCTTCCTCTCCCACCCCATCTCAG | + |
|
Preference number: 6 (lower is better) Translates to: LARVLGTVSACF*GVTPSSPTPSQ Trigger: CTGAGATGGGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058801.15 |
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| CDS GCA 72 bp | AACAGTCTTGCTAGAGTCTTGGGGACTGTCTCTGCCTaGTTCTTGGGTGTCACGCCTTCCTCTCCCACCCCA | + |
|
Preference number: 6 (lower is better) Translates to: NSLARVLGTVSA*FLGVTPSSPTP Trigger: TGGGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058801.15 |
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