Pregenerated sensors for H2-T10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079491Ensembl transcript IDs: ENSMUST00000166442.3, ENSMUST00000174382.8
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACTGTCTCTGCCTGCTTCTTGGGTGTCACGCCTTCCTCTCCCACCTaGATTCTTCTTCATGGGTCTGCGAGCCACACAGAGACAAATGAG | + |
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Preference number: 1 (lower is better) Translates to: TVSACFLGVTPSSPT*ILLHGSASHTETNE Trigger: CTCATTTGTCTCTGTGTGGCTCGCAGACCCATGAAGAAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| 3UTR GCA 90 bp | AGGAGGGAGCTTTGTGTCCCTGGGACCCTTGACAAGGTGACAAAATaGCTGACTAGAAGCCGAGTAGGCAAGAGACAGGTGTTCAGATCC | + |
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Preference number: 1 (lower is better) Translates to: RRELCVPGTLDKVTK*LTRSRVGKRQVFRS Trigger: GGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCATTTTGTCACCTTGTCAAGGGTCCCAGGGACACAAAGCTCCCTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR CCA 90 bp | ACAACAGTCTTGCTAGAGTCTTGGGGACTGTCTCTGCCTGCTTCTTaGGTGTCACGCCTTCCTCTCCCACCTGCATTCTTCTTCATGGGT | + |
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Preference number: 1 (lower is better) Translates to: TTVLLESWGLSLPAS*VSRLPLPPAFFFMG Trigger: ACCCATGAAGAAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| 3UTR GCA 90 bp | ATCATCCACAACAGTCTTGCTAGAGTCTTGGGGACTGTCTCTGCCTaGTTCTTGGGTGTCACGCCTTCCTCTCCCACCTGCATTCTTCTT | + |
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Preference number: 1 (lower is better) Translates to: IIHNSLARVLGTVSA*FLGVTPSSPTCILL Trigger: AAGAAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGTGGATGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| 3UTR TCA 90 bp | TCCACAGTTCTTTTCTGCATCAAAGCCATTGATCCCAATTTGACCTaGTTAAATGTCCCTGAAGCATTGGGGGTAGGACCCAGAGTGCTG | + |
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Preference number: 1 (lower is better) Translates to: STVLFCIKAIDPNLT*LNVPEALGVGPRVL Trigger: CAGCACTCTGGGTCCTACCCCCAATGCTTCAGGGACATTTAATCAGGTCAAATTGGGATCAATGGCTTTGATGCAGAAAAGAACTGTGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR CCA 90 bp | AGTCAAGGTGACAGTAAAGACTCGCCAACTGAAGTTCCTGGGGAGTaGCCTAGACAAGTCTTACAGTACTTAATCTTCCAAAAGCAAACC | + |
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Preference number: 1 (lower is better) Translates to: SQGDSKDSPTEVPGE*PRQVLQYLIFQKQT Trigger: GGTTTGCTTTTGGAAGATTAAGTACTGTAAGACTTGTCTAGGCCACTCCCCAGGAACTTCAGTTGGCGAGTCTTTACTGTCACCTTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| 3UTR-3UTR CCA 90 bp | CTGGCCTGCTGTCCTCACAGCCCAGCCACTCAAAGGGGCATCTCCCAGATGATCGGACCCAGAGTGCTGTaGGTGAGAGGAGGGAGCTTT | + |
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Preference number: 2 (lower is better) Translates to: LACCPHSPATQRGISQMIGPRVL*VRGGSF Trigger: AAAGCTCCCTCCTCTCACCCACAGCACTCTGGGTCC...GATCATCTGGGAGATGCCCCTTTGAGTGGCTGGGCTGTGAGGACAGCAGGCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR-3UTR TCA 90 bp | AGTGCTGTGGGTGAGAGGAGGGAGCTTTGTGTCCCTGGGACCCTTGACAAGGTGCTCGAGCCAGAAAGGTaGGATGTGTTTCTGTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: SAVGERRELCVPGTLDKVLEPER*DVFLSR Trigger: CCTGGACAGAAACACATCTCACCTTTCTGGCTCGAG...CACCTTGTCAAGGGTCCCAGGGACACAAAGCTCCCTCCTCTCACCCACAGCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR-3UTR CCA 90 bp | AGAGTGCTGTGGGTGAGAGGAGGGAGCTTTGTGTCCCTGGGACCCTTGACAAGGTGTTTCTGTCCAGGGTaGCAAGAACTGGCCTGCTGT | + |
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Preference number: 2 (lower is better) Translates to: RVLWVRGGSFVSLGPLTRCFCPG*QELACC Trigger: ACAGCAGGCCAGTTCTTGCCACCCTGGACAGAAACA...CCTTGTCAAGGGTCCCAGGGACACAAAGCTCCCTCCTCTCACCCACAGCACTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTGTCCTCACAGCCCAGCCACTCAAAGGGGCATCTCCCAGATGATCCTAAATGGACCCAGAGTGCTGTaGGTGAGAGGAGGGAGCTTT | + |
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Preference number: 2 (lower is better) Translates to: CCPHSPATQRGISQMILNGPRVL*VRGGSF Trigger: AAAGCTCCCTCCTCTCACCCACAGCACTCTGGGTCC...ATTTAGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGGGCTGTGAGGACAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR CAA 90 bp | CACAACAGTCTTGCTAGAGTCTTGGGGACTGTCTCTGCCTGCTTCTaGGGTGTCACGCCTTCCTCTCCCACCTGCATTCTTCTTCATGGG | + |
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Preference number: 2 (lower is better) Translates to: HNSLARVLGTVSACF*GVTPSSPTCILLHG Trigger: CCCATGAAGAAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| 3UTR-3UTR GCA 90 bp | CTGGCCTGCTGTCCTCACAGCCCAGCCACTCAAAGGGGCATCTCCCAGATGATCGACAAGGTGACAAAATaGCTGACTAGAAGCCGAGTA | + |
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Preference number: 2 (lower is better) Translates to: LACCPHSPATQRGISQMIDKVTK*LTRSRV Trigger: TACTCGGCTTCTAGTCAGGCATTTTGTCACCTTGTC...GATCATCTGGGAGATGCCCCTTTGAGTGGCTGGGCTGTGAGGACAGCAGGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR-3UTR GCA 90 bp | GTAAAGACTCGCCAACTGAAGTTCCTGGGGAGTGGCCTAGACAAGTCTTACAGTGGGACTGTCTCTGCCTaGTTCTTGGGTGTCACGCCT | + |
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Preference number: 2 (lower is better) Translates to: VKTRQLKFLGSGLDKSYSGTVSA*FLGVTP Trigger: AGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCC...ACTGTAAGACTTGTCTAGGCCACTCCCCAGGAACTTCAGTTGGCGAGTCTTTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| 3UTR-3UTR GCA 90 bp | GTAAAGACTCGCCAACTGAAGTTCCTGGGGAGTGGCCTAGACAAGTCTTACAGTCCTTCCTCTCCCACCTaGATTCTTCTTCATGGGTCT | + |
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Preference number: 2 (lower is better) Translates to: VKTRQLKFLGSGLDKSYSPSSPT*ILLHGS Trigger: AGACCCATGAAGAAGAATGCAGGTGGGAGAGGAAGG...ACTGTAAGACTTGTCTAGGCCACTCCCCAGGAACTTCAGTTGGCGAGTCTTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| 3UTR-3UTR TCA 90 bp | TGCTGTCCTCACAGCCCAGCCACTCAAAGGGGCATCTCCCAGATGATCCTAAATGATCCCAATTTGACCTaGTTAAATGTCCCTGAAGCA | + |
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Preference number: 2 (lower is better) Translates to: CCPHSPATQRGISQMILNDPNLT*LNVPEA Trigger: TGCTTCAGGGACATTTAATCAGGTCAAATTGGGATC...ATTTAGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGGGCTGTGAGGACAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR-3UTR TCA 90 bp | CAGTACTTAATCTTCCAAAAGCAAACCCCCATCTCCTCATCATCCACAACAGTCCTCGAGCCAGAAAGGTaGGATGTGTTTCTGTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: QYLIFQKQTPISSSSTTVLEPER*DVFLSR Trigger: CCTGGACAGAAACACATCTCACCTTTCTGGCTCGAG...GACTGTTGTGGATGATGAGGAGATGGGGGTTTGCTTTTGGAAGATTAAGTACTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| 3UTR-3UTR GCA 90 bp | GTAAAGACTCGCCAACTGAAGTTCCTGGGGAGTGGCCTAGACAAGTCTTACAGTGACAAGGTGACAAAATaGCTGACTAGAAGCCGAGTA | + |
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Preference number: 2 (lower is better) Translates to: VKTRQLKFLGSGLDKSYSDKVTK*LTRSRV Trigger: TACTCGGCTTCTAGTCAGGCATTTTGTCACCTTGTC...ACTGTAAGACTTGTCTAGGCCACTCCCCAGGAACTTCAGTTGGCGAGTCTTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGATGATCCTAAATCCAGTCAAGGTGACAGTAAAGACTCGCCAACTGAAGTTTGTTTCTGTCCAGGGTaGCAAGAACTGGCCTGCTGT | + |
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Preference number: 2 (lower is better) Translates to: PDDPKSSQGDSKDSPTEVCFCPG*QELACC Trigger: ACAGCAGGCCAGTTCTTGCCACCCTGGACAGAAACA...AACTTCAGTTGGCGAGTCTTTACTGTCACCTTGACTGGATTTAGGATCATCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| 3UTR-3UTR TCA 90 bp | CCTATCTCTATTAGTCCACAGTTCTTTTCTGCATCAAAGCCATTGATCCCAATTTGTCCCTGGGACCCTTaGCAAGGTGACAAAATGCCT | + |
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Preference number: 2 (lower is better) Translates to: PISISPQFFSASKPLIPICPWDP*QGDKMP Trigger: AGGCATTTTGTCACCTTGTCAAGGGTCCCAGGGACA...AATTGGGATCAATGGCTTTGATGCAGAAAAGAACTGTGGACTAATAGAGATAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR CCA 72 bp | GTCCCTGAAGCATTGGGGGTAGGACCCAGAGTGCTGTaGGTGAGAGGAGGGAGCTTTGTGTCCCTGGGACCC | + |
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Preference number: 3 (lower is better) Translates to: VPEALGVGPRVL*VRGGSFVSLGP Trigger: GGGTCCCAGGGACACAAAGCTCCCTCCTCTCACCCACAGCACTCTGGGTCCTACCCCCAATGCTTCAGGGAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR GCA 72 bp | GCCTGCTTCTTGGGTGTCACGCCTTCCTCTCCCACCTaGATTCTTCTTCATGGGTCTGCGAGCCACACAGAG | + |
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Preference number: 3 (lower is better) Translates to: ACFLGVTPSSPT*ILLHGSASHTE Trigger: CTCTGTGTGGCTCGCAGACCCATGAAGAAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| 3UTR-3UTR CAA 90 bp | CCTATCTCTATTAGTCCACAGTTCTTTTCTGCATCAAAGCCATTGATCCCAATTAATGTCCCTGAAGCATaGGGGGTAGGACCCAGAGTG | + |
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Preference number: 3 (lower is better) Translates to: PISISPQFFSASKPLIPINVPEA*GVGPRV Trigger: CACTCTGGGTCCTACCCCCAATGCTTCAGGGACATT...AATTGGGATCAATGGCTTTGATGCAGAAAAGAACTGTGGACTAATAGAGATAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR TCA 72 bp | CTTTTCTGCATCAAAGCCATTGATCCCAATTTGACCTaGTTAAATGTCCCTGAAGCATTGGGGGTAGGACCC | + |
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Preference number: 3 (lower is better) Translates to: LFCIKAIDPNLT*LNVPEALGVGP Trigger: GGGTCCTACCCCCAATGCTTCAGGGACATTTAATCAGGTCAAATTGGGATCAATGGCTTTGATGCAGAAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR CCA 72 bp | GACAGTAAAGACTCGCCAACTGAAGTTCCTGGGGAGTaGCCTAGACAAGTCTTACAGTACTTAATCTTCCAA | + |
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Preference number: 3 (lower is better) Translates to: DSKDSPTEVPGE*PRQVLQYLIFQ Trigger: TTGGAAGATTAAGTACTGTAAGACTTGTCTAGGCCACTCCCCAGGAACTTCAGTTGGCGAGTCTTTACTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| CDS-3UTR GCA 90 bp | GGCCTGCTGTCCTCACAGCCCAGCCACTCAAAGGGGCATCTCCCAGATGATCCTCTGCTCCAGCCAGGGTaGCATCCTCGGAGTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: GLLSSQPSHSKGHLPDDPLLQPG*HPRSLL Trigger: GAGGAGACTCCGAGGATGGCACCCTGGCTGGAGCAG...AGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGGGCTGTGAGGACAGCAGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| CDS-3UTR TCA 90 bp | GGCCTGCTGTCCTCACAGCCCAGCCACTCAAAGGGGCATCTCCCAGATGATCCTCCCAGCACCTCAGGGTaGCATCACCTTCAGGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: GLLSSQPSHSKGHLPDDPPSTSG*HHLQVW Trigger: CCAGACCTGAAGGTGATGTCACCCTGAGGTGCTGGG...AGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGGGCTGTGAGGACAGCAGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166442.3 |
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| CDS-3UTR GCA 90 bp | GACTGTCTCTGCCTGCTTCTTGGGTGTCACGCCTTCCTCTCCCACCTGCATTCTTCATCTGCTTCCTCCTaGTCCAGCCAGGGTGCCATC | + |
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Preference number: 4 (lower is better) Translates to: DCLCLLLGCHAFLSHLHSSSASS*SSQGAI Trigger: GATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATGA...AGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| CDS-3UTR GCA 90 bp | TGCTGTCCTCACAGCCCAGCCACTCAAAGGGGCATCTCCCAGATGATCCTAAATTCATCTGCTTCCTCCTaGTCCAGCCAGGGTGCCATC | + |
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Preference number: 4 (lower is better) Translates to: CCPHSPATQRGISQMILNSSASS*SSQGAI Trigger: GATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATGA...ATTTAGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGGGCTGTGAGGACAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| CDS-3UTR GCA 90 bp | GGCCTGCTGTCCTCACAGCCCAGCCACTCAAAGGGGCATCTCCCAGATGATCCTGTGACTATACGAGTCTaGTGTTCCCAGTCATCTGCT | + |
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Preference number: 4 (lower is better) Translates to: GLLSSQPSHSKGHLPDDPVTIRV*CSQSSA Trigger: AGCAGATGACTGGGAACAGCAGACTCGTATAGTCAC...AGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGGGCTGTGAGGACAGCAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR CAA 72 bp | CTTGCTAGAGTCTTGGGGACTGTCTCTGCCTGCTTCTaGGGTGTCACGCCTTCCTCTCCCACCTGCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: LARVLGTVSACF*GVTPSSPTCIL Trigger: AAGAATGCAGGTGGGAGAGGAAGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| CDS-3UTR GCA 90 bp | AGTGCTGTGGGTGAGAGGAGGGAGCTTTGTGTCCCTGGGACCCTTGACAAGGTGTTTTCCAGGTATTTCTaGAGCAGATCTGAGCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: SAVGERRELCVPGTLDKVFSRYF*SRSEQW Trigger: CCACTGCTCAGATCTGCTGCAGAAATACCTGGAAAA...CACCTTGTCAAGGGTCCCAGGGACACAAAGCTCCCTCCTCTCACCCACAGCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| 3UTR CAA 72 bp | CATCTCCTCATCATCCACAACAGTCTTGCTAGAGTCTaGGGGACTGTCTCTGCCTGCTTCTTGGGTGTCACG | + |
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Preference number: 4 (lower is better) Translates to: HLLIIHNSLARV*GTVSACFLGVT Trigger: CGTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGTGGATGATGAGGAGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| CDS-3UTR CCA 90 bp | TGCTGTCCTCACAGCCCAGCCACTCAAAGGGGCATCTCCCAGATGATCCTAAATGAAGTTCCTGGGGAGTaGCCTAGACAAGTCTTACAG | + |
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Preference number: 4 (lower is better) Translates to: CCPHSPATQRGISQMILNEVPGE*PRQVLQ Trigger: CTGTAAGACTTGTCTAGGCCACTCCCCAGGAACTTC...ATTTAGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGGGCTGTGAGGACAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166442.3 |
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| CDS-3UTR GCA 90 bp | CTTACAGTACTTAATCTTCCAAAAGCAAACCCCCATCTCCTCATCATCCACAACCTGCTCCAGCCAGGGTaGCATCCTCGGAGTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: LTVLNLPKANPHLLIIHNLLQPG*HPRSLL Trigger: GAGGAGACTCCGAGGATGGCACCCTGGCTGGAGCAG...GTTGTGGATGATGAGGAGATGGGGGTTTGCTTTTGGAAGATTAAGTACTGTAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| CDS-3UTR GCA 90 bp | GGTGAGAGGAGGGAGCTTTGTGTCCCTGGGACCCTTGACAAGGTGACAAAATGCTTTTCCAGGTATTTCTaGAGCAGATCTGAGCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: GERRELCVPGTLDKVTKCFSRYF*SRSEQW Trigger: CCACTGCTCAGATCTGCTGCAGAAATACCTGGAAAA...GCATTTTGTCACCTTGTCAAGGGTCCCAGGGACACAAAGCTCCCTCCTCTCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| CDS-3UTR GCA 90 bp | CCTATCTCTATTAGTCCACAGTTCTTTTCTGCATCAAAGCCATTGATCCCAATTGGGACTGTCTCTGCCTaGTTCTTGGGTGTCACGCCT | + |
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Preference number: 4 (lower is better) Translates to: PISISPQFFSASKPLIPIGTVSA*FLGVTP Trigger: AGGCGTGACACCCAAGAAGCAGGCAGAGACAGTCCC...AATTGGGATCAATGGCTTTGATGCAGAAAAGAACTGTGGACTAATAGAGATAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166442.3 |
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| CDS-3UTR GCA 90 bp | CCTATCTCTATTAGTCCACAGTTCTTTTCTGCATCAAAGCCATTGATCCCAATTCTTGGGGACTGTCTCTaGCTGCTTCTTGGGTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: PISISPQFFSASKPLIPILGDCL*LLLGCH Trigger: GTGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAG...AATTGGGATCAATGGCTTTGATGCAGAAAAGAACTGTGGACTAATAGAGATAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166442.3 |
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| CDS-3UTR GCA 90 bp | AACCCTATCTCTATTAGTCCACAGTTCTTTTCTGCATCAAAGCCATTGATCCCACCTTCCTCTCCCACCTaGATTCTTCTTCATGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: NPISISPQFFSASKPLIPPSSPT*ILLHGS Trigger: AGACCCATGAAGAAGAATGCAGGTGGGAGAGGAAGG...TGGGATCAATGGCTTTGATGCAGAAAAGAACTGTGGACTAATAGAGATAGGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166442.3 |
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| CDS-3UTR GCA 90 bp | AACCCTATCTCTATTAGTCCACAGTTCTTTTCTGCATCAAAGCCATTGATCCCATCTTCTTCATGGGTCTaGGAGCCACACAGAGACAAA | + |
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Preference number: 4 (lower is better) Translates to: NPISISPQFFSASKPLIPSSSWV*EPHRDK Trigger: TTTGTCTCTGTGTGGCTCGCAGACCCATGAAGAAGA...TGGGATCAATGGCTTTGATGCAGAAAAGAACTGTGGACTAATAGAGATAGGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166442.3 |
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| CDS-3UTR GCA 90 bp | CCTATCTCTATTAGTCCACAGTTCTTTTCTGCATCAAAGCCATTGATCCCAATTAGATCTGAGGTACAGTaGTGTTTCCCACTGTACAGG | + |
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Preference number: 4 (lower is better) Translates to: PISISPQFFSASKPLIPIRSEVQ*CFPLYR Trigger: CCTGTACAGTGGGAAACAGCACTGTACCTCAGATCT...AATTGGGATCAATGGCTTTGATGCAGAAAAGAACTGTGGACTAATAGAGATAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166442.3 |
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| CDS GCA 90 bp | AGTCTGCTGTTCCCAGTCATCTGCTTCCTCCTGCTCCAGCCAGGGTaGCATCCTCGGAGTCTCCTCCTTGCTGCTGAAGCGCAGGACCTG | + |
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Preference number: 5 (lower is better) Translates to: SLLFPVICFLLLQPG*HPRSLLLAAEAQDL Trigger: CAGGTCCTGCGCTTCAGCAGCAAGGAGGAGACTCCGAGGATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATGACTGGGAACAGCAGACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| CDS GCA 90 bp | ATTGTGACTATACGAGTCTGCTGTTCCCAGTCATCTGCTTCCTCCTaGTCCAGCCAGGGTGCCATCCTCGGAGTCTCCTCCTTGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: IVTIRVCCSQSSASS*SSQGAILGVSSLLL Trigger: CAGCAGCAAGGAGGAGACTCCGAGGATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATGACTGGGAACAGCAGACTCGTATAGTCACAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| CDS GCA 90 bp | GATCTGAGCAGTGGCCCTCCAGGTGCTGAGAGATCTGAGGTACAGTaGTGTTTCCCACTGTTTTCCCACTGTACAGGAACTTGGGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: DLSSGPPGAERSEVQ*CFPLFSHCTGTWVF Trigger: GAAAACCCAAGTTCCTGTACAGTGGGAAAACAGTGGGAAACAGCACTGTACCTCAGATCTCTCAGCACCTGGAGGGCCACTGCTCAGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| CDS-3UTR CAA 90 bp | TTAAACCCTATCTCTATTAGTCCACAGTTCTTTTCTGCATCAAAGCCATTGATCCCACTGTACAGGAACTaGGGTTTTCGCTCAGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: LNPISISPQFFSASKPLIPLYRN*GFRSGW Trigger: CCACCCTGAGCGAAAACCCAAGTTCCTGTACAGTGG...GATCAATGGCTTTGATGCAGAAAAGAACTGTGGACTAATAGAGATAGGGTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| CDS CCA 72 bp | AGTGTGAACCCAAAGGGATCCGAGTCCAGGATGGTCTaGCATCCAGCTGCAGGAGAAGGGCGCAGACCACAG | + |
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Preference number: 6 (lower is better) Translates to: SVNPKGSESRMV*HPAAGEGRRPQ Trigger: CTGTGGTCTGCGCCCTTCTCCTGCAGCTGGATGCCAGACCATCCTGGACTCGGATCCCTTTGGGTTCACACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| CDS GCA 72 bp | AGTGGCCCTCCAGGTGCTGAGAGATCTGAGGTACAGTaGTGTTTCCCACTGTACAGGAACTTGGGTTTTCGC | + |
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Preference number: 6 (lower is better) Translates to: SGPPGAERSEVQ*CFPLYRNLGFR Trigger: GCGAAAACCCAAGTTCCTGTACAGTGGGAAACAGCACTGTACCTCAGATCTCTCAGCACCTGGAGGGCCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166442.3 |
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| CDS CCA 72 bp | CTGAGGTACAGTGCTGTTTCCCACTGTACAGGAACTTaGGTTTTCGCTCAGGGTGGGGAGATCCTCGCTATC | + |
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Preference number: 6 (lower is better) Translates to: LRYSAVSHCTGT*VFAQGGEILAI Trigger: GATAGCGAGGATCTCCCCACCCTGAGCGAAAACCCAAGTTCCTGTACAGTGGGAAACAGCACTGTACCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166442.3 |
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| CDS GCA 72 bp | AGTGGCCCTCCAGGTGCTGAGAGATCTGAGGTACAGTaGTGTTTCCCACTGTTTTCCCACTGTACAGGAACT | + |
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Preference number: 6 (lower is better) Translates to: SGPPGAERSEVQ*CFPLFSHCTGT Trigger: AGTTCCTGTACAGTGGGAAAACAGTGGGAAACAGCACTGTACCTCAGATCTCTCAGCACCTGGAGGGCCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174382.8 |
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| CDS CAA 72 bp | TCTGAGGTACAGTGCTGTTTCCCACTGTACAGGAACTaGGGTTTTCGCTCAGGGTGGGGAGATCCTCGCTAT | + |
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Preference number: 6 (lower is better) Translates to: SEVQCCFPLYRN*GFRSGWGDPRY Trigger: ATAGCGAGGATCTCCCCACCCTGAGCGAAAACCCAAGTTCCTGTACAGTGGGAAACAGCACTGTACCTCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166442.3 |
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| CDS TCA 72 bp | ACCAGGGTCATCAGATTCCTTTCAGACAGCTGTCCTTaGATTGTGACTATACGAGTCTGCTGTTCCCAGTCA | + |
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Preference number: 6 (lower is better) Translates to: TRVIRFLSDSCP*IVTIRVCCSQS Trigger: TGACTGGGAACAGCAGACTCGTATAGTCACAATTCAAGGACAGCTGTCTGAAAGGAATCTGATGACCCTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| CDS CAA 72 bp | AACCAGGGTCATCAGATTCCTTTCAGACAGCTGTCCTaGAATTGTGACTATACGAGTCTGCTGTTCCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: NQGHQIPFRQLS*NCDYTSLLFPV Trigger: GACTGGGAACAGCAGACTCGTATAGTCACAATTCAAGGACAGCTGTCTGAAAGGAATCTGATGACCCTGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| CDS CAA 90 bp | GTAAAAATGAACCAGGGTCATCAGATTCCTTTCAGACAGCTGTCCTaGAATTGTGACTATACGAGTCTGCTGTTCCCAGTCATCTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: VKMNQGHQIPFRQLS*NCDYTSLLFPVICF Trigger: GAAGCAGATGACTGGGAACAGCAGACTCGTATAGTCACAATTCAAGGACAGCTGTCTGAAAGGAATCTGATGACCCTGGTTCATTTTTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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| CDS TCA 72 bp | TCATCAGATTCCTTTCAGACAGCTGTCCTTGAATTGTaGCTATACGAGTCTGCTGTTCCCAGTCATCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: SSDSFQTAVLEL*LYESAVPSHLL Trigger: AAGCAGATGACTGGGAACAGCAGACTCGTATAGTCACAATTCAAGGACAGCTGTCTGAAAGGAATCTGATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166442.3 ENSMUST00000174382.8 |
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