Pregenerated sensors for H2-Q7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060550Ensembl transcript IDs: ENSMUST00000071951.14, ENSMUST00000076256.8, ENSMUST00000078205.14, ENSMUST00000116598.10
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | GATGTAGATGTACCCAGTGTTTGGCTGGAACAGGAAGGTTGGCTGTaGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGG | + |
Preference number: 1 (lower is better) Translates to: DVDVPSVWLEQEGWL*KGTGQCRDRVQVCR Trigger: CCTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGGTACATCTACATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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3UTR GCA 90 bp | GAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATaGTGGAGCTGGAGCACAGTCCCCTCCTTGTCCACCTGTGTTTCA | + |
Preference number: 1 (lower is better) Translates to: EHIVCHSVQSRQLSS*WSWSTVPSLSTCVS Trigger: TGAAACACAGGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076256.8 |
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3UTR TCA 90 bp | TCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGAGCTaGCAGGATGTAGATGTACCCAGTGTTTGGCTGGAACAGGAAGGT | + |
Preference number: 1 (lower is better) Translates to: SSCESMELELGAAWS*QDVDVPSVWLEQEG Trigger: ACCTTCCTGTTCCAGCCAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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3UTR TCA 90 bp | CCCTCAGCTCAAGATGATAACAATCAAGGTCACATACTCTTCGTGTaGAAGTATGGAGCTGGAGCTCGGGGCAGCATGGAGCTGACAGGA | + |
Preference number: 1 (lower is better) Translates to: PSAQDDNNQGHILFV*KYGAGARGSMELTG Trigger: TCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTTGATTGTTATCATCTTGAGCTGAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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3UTR-3UTR TCA 90 bp | GTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGGGGTCACAGGAGAGACATaGACACATCGTCTGTCACTC | + |
Preference number: 2 (lower is better) Translates to: VGCGREQGSAGTGSRCAGVTGET*THRLSL Trigger: GAGTGACAGACGATGTGTTCATGTCTCTCCTGTGAC...CCCTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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3UTR CAA 90 bp | GCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTaGGCTGGAACAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTG | + |
Preference number: 2 (lower is better) Translates to: ARGSMELTGCRCTQC*AGTGRLAVEGNRAV Trigger: CACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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3UTR-3UTR TCA 90 bp | AGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGGTCACAGGAGAGACATaGACACATCGTCTGTCACTC | + |
Preference number: 2 (lower is better) Translates to: RLAVEGNRAVQGQGPGVQVTGET*THRLSL Trigger: GAGTGACAGACGATGTGTTCATGTCTCTCCTGTGAC...CTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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3UTR-3UTR GCA 90 bp | GCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGGCTGGAAGGCAGCTGTCTTCATaGTGGAGCTGGAGCACAGTC | + |
Preference number: 2 (lower is better) Translates to: ARGSMELTGCRCTQCLAGRQLSS*WSWSTV Trigger: GACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCT...TCCAGCCAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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3UTR-3UTR CCA 90 bp | AAGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGCAGCTGTCTTCATGCTaGAGCTGGAGCACAGTCCCC | + |
Preference number: 2 (lower is better) Translates to: KVTYSSCESMELELGAAWQLSSC*SWSTVP Trigger: GGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTG...CCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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3UTR-3UTR TCA 90 bp | GCTGGAGCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGGTCACAGGAGAGACATaGACACATCGTCTGTCACTC | + |
Preference number: 2 (lower is better) Translates to: AGARGSMELTGCRCTQCLVTGET*THRLSL Trigger: GAGTGACAGACGATGTGTTCATGTCTCTCCTGTGAC...CAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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3UTR-3UTR GCA 90 bp | GGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGGCTGGAACAGGAAGGCAGCTGTCTTCATaGTGGAGCTGGAGCACAGTC | + |
Preference number: 2 (lower is better) Translates to: GSMELTGCRCTQCLAGTGRQLSS*WSWSTV Trigger: GACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCT...TCCTGTTCCAGCCAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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3UTR-3UTR CCA 90 bp | ATCAAGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATCTTCATGCTGGAGCTaGAGCACAGTCCCCTCCTTG | + |
Preference number: 2 (lower is better) Translates to: IKVTYSSCESMELELGAASSCWS*STVPSL Trigger: CAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGA...TGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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3UTR-3UTR CCA 90 bp | AGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGATACCCAGTGTTTGGCTaGAACAGGAAGGTTGGCTGT | + |
Preference number: 2 (lower is better) Translates to: RSHTLRVKVWSWSSGQHGYPVFG*NRKVGC Trigger: ACAGCCAACCTTCCTGTTCCAGCCAAACACTGGGTA...TCCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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3UTR-3UTR CCA 90 bp | CATAGGCTCACAGGGAACATGAGACACTGTTGTCTAAAGAGAACTGAGGGCTCTTCTTCATGCTGGAGCTaGAGCACAGTCCCCTCCTTG | + |
Preference number: 2 (lower is better) Translates to: HRLTGNMRHCCLKRTEGSSSCWS*STVPSL Trigger: CAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGA...AGAGCCCTCAGTTCTCTTTAGACAACAGTGTCTCATGTTCCCTGTGAGCCTATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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3UTR GCA 72 bp | GTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATaGTGGAGCTGGAGCACAGTCCCCTCCTTGTCCACC | + |
Preference number: 3 (lower is better) Translates to: VCHSVQSRQLSS*WSWSTVPSLST Trigger: GGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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3UTR CCA 72 bp | GTACCCAGTGTTTGGCTGGAACAGGAAGGTTGGCTGTaGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAG | + |
Preference number: 3 (lower is better) Translates to: VPSVWLEQEGWL*KGTGQCRDRVQ Trigger: CTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGGTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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3UTR-3UTR CAA 90 bp | CCCAGTGTTTGGCTGGAACAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGCACAGTCCCCTCCTaGTCCACCTGTGTTTCACCT | + |
Preference number: 3 (lower is better) Translates to: PSVWLEQEGWLWKGTGQCSTVPS*STCVSP Trigger: AGGTGAAACACAGGTGGACAAGGAGGGGACTGTGCT...GCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076256.8 |
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3UTR CCA 72 bp | TGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATGCTaGAGCTGGAGCACAGTCCCCTCCTTGTCCACCTGT | + |
Preference number: 3 (lower is better) Translates to: CHSVQSRQLSSC*SWSTVPSLSTC Trigger: ACAGGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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3UTR CCA 72 bp | TCAGTGCAGTCCAGGCAGCTGTCTTCATGCTGGAGCTaGAGCACAGTCCCCTCCTTGTCCACCTGTGTTTCA | + |
Preference number: 3 (lower is better) Translates to: SVQSRQLSSCWS*STVPSLSTCVS Trigger: TGAAACACAGGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCTGGACTGCACTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076256.8 |
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3UTR-3UTR CAA 90 bp | AAGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGGCTGGAACAGGAAGGTaGGCTGTGGAAGGGAACAGG | + |
Preference number: 3 (lower is better) Translates to: KVTYSSCESMELELGAAWAGTGR*AVEGNR Trigger: CCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGC...CCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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3UTR TCA 72 bp | TGTGCAGGGCAGGCTGGGCTCCACAGTTCCTCACATTaGGTCCATAGGCTCACAGGGAACATGAGACACTGT | + |
Preference number: 3 (lower is better) Translates to: CAGQAGLHSSSH*VHRLTGNMRHC Trigger: ACAGTGTCTCATGTTCCCTGTGAGCCTATGGACTCAATGTGAGGAACTGTGGAGCCCAGCCTGCCCTGCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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3UTR GCA 72 bp | CACAGGAGAGACATGAACACATCGTCTGTCACTCAGTaGAGTCCAGGCAGCTGTCTTCATGCTGGAGCTGGA | + |
Preference number: 3 (lower is better) Translates to: HRRDMNTSSVTQ*SPGSCLHAGAG Trigger: TCCAGCTCCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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3UTR TCA 72 bp | CACAGGGAACATGAGACACTGTTGTCTAAAGAGAACTaGGGGCTCTGGATGTCACAGGAGAGACATGAACAC | + |
Preference number: 3 (lower is better) Translates to: HREHETLLSKEN*GLWMSQERHEH Trigger: GTGTTCATGTCTCTCCTGTGACATCCAGAGCCCTCAGTTCTCTTTAGACAACAGTGTCTCATGTTCCCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR TCA 90 bp | AGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGCGTAGCCGACAGAGATaGACCAGGGCTCCCCGAGGC | + |
Preference number: 4 (lower is better) Translates to: RLAVEGNRAVQGQGPGVQRSRQR*TRAPRG Trigger: GCCTCGGGGAGCCCTGGTTCATCTCTGTCGGCTACG...CTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR TCA 90 bp | CCCAGTGTTTGGCTGGAACAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCCGTAGCCGACAGAGATaGACCAGGGCTCCCCGAGGC | + |
Preference number: 4 (lower is better) Translates to: PSVWLEQEGWLWKGTGQCRSRQR*TRAPRG Trigger: GCCTCGGGGAGCCCTGGTTCATCTCTGTCGGCTACG...GCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR GCA 90 bp | GTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGGGCTCCCTCGGAAACTCTaGTCATGGCCCTTGGCGATC | + |
Preference number: 4 (lower is better) Translates to: VGCGREQGSAGTGSRCAGLPRKL*SWPLAI Trigger: GATCGCCAAGGGCCATGAGCAGAGTTTCCGAGGGAG...CCCTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR GCA 90 bp | GTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGGGGTTGTAGTAGCTCTGTaGGGTCCTCAGGCTCCCTCG | + |
Preference number: 4 (lower is better) Translates to: VGCGREQGSAGTGSRCAGVVVAL*GPQAPS Trigger: CGAGGGAGCCTGAGGACCGCACAGAGCTACTACAAC...CCCTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR TCA 90 bp | GCTGGAGCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGCGTAGCCGACAGAGATaGACCAGGGCTCCCCGAGGC | + |
Preference number: 4 (lower is better) Translates to: AGARGSMELTGCRCTQCLRSRQR*TRAPRG Trigger: GCCTCGGGGAGCCCTGGTTCATCTCTGTCGGCTACG...CAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR TCA 90 bp | GGAGCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGGCTCGTAGCCGACAGAGATaGACCAGGGCTCCCCGAGGC | + |
Preference number: 4 (lower is better) Translates to: GARGSMELTGCRCTQCLARSRQR*TRAPRG Trigger: GCCTCGGGGAGCCCTGGTTCATCTCTGTCGGCTACG...AGCCAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR GCA 90 bp | TCCAGGCAGCTGTCTTCATGCTGGAGCTGGAGCACAGTCCCCTCCTTGTCCACCCGAGCTGCAGGTATCTaGGGAGCGACTGCATGCACG | + |
Preference number: 4 (lower is better) Translates to: SRQLSSCWSWSTVPSLSTRAAGI*GATACT Trigger: CGTGCATGCAGTCGCTCCGCAGATACCTGCAGCTCG...GGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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CDS-3UTR CCA 90 bp | CAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGGGTCACATGTGCCTTTaGGGGATCTGTGCGCAGCAG | + |
Preference number: 4 (lower is better) Translates to: QEGWLWKGTGQCRDRVQVGHMCL*GICAQQ Trigger: CTGCTGCGCACAGATCCCCCAAAGGCACATGTGACC...CACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 |
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CDS-3UTR GCA 90 bp | AGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGGGCCTGGTCTTTCTCTaGAATACCAGCCTGCTCCCA | + |
Preference number: 4 (lower is better) Translates to: RLAVEGNRAVQGQGPGVQGLVFL*NTSLLP Trigger: TGGGAGCAGGCTGGTATTGCAGAGAAAGACCAGGCC...CTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR CCA 90 bp | AGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGGTCACATGTGCCTTTaGGGGATCTGTGCGCAGCAG | + |
Preference number: 4 (lower is better) Translates to: RKVGCGREQGSAGTGSRCGHMCL*GICAQQ Trigger: CTGCTGCGCACAGATCCCCCAAAGGCACATGTGACC...ACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 |
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CDS-3UTR GCA 90 bp | CCCAGTGTTTGGCTGGAACAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCGGCCTGGTCTTTCTCTaGAATACCAGCCTGCTCCCA | + |
Preference number: 4 (lower is better) Translates to: PSVWLEQEGWLWKGTGQCGLVFL*NTSLLP Trigger: TGGGAGCAGGCTGGTATTGCAGAGAAAGACCAGGCC...GCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR CCA 90 bp | TCCAGGCAGCTGTCTTCATGCTGGAGCTGGAGCACAGTCCCCTCCTTGTCCACCCGGGACACAGCGGTGTaGAAATATTGCAGCGAGTGT | + |
Preference number: 4 (lower is better) Translates to: SRQLSSCWSWSTVPSLSTRDTAV*KYCSEC Trigger: ACACTCGCTGCAATATTTCCACACCGCTGTGTCCCG...GGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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CDS-3UTR CCA 90 bp | AGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTCGGGACACAGCGGTGTaGAAATATTGCAGCGAGTGT | + |
Preference number: 4 (lower is better) Translates to: RKVGCGREQGSAGTGSRCRDTAV*KYCSEC Trigger: ACACTCGCTGCAATATTTCCACACCGCTGTGTCCCG...ACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR CCA 90 bp | GCTGGAGCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGTCTGCTCATGGCCCTTaGCGATCTGTGTCTCCCGCT | + |
Preference number: 4 (lower is better) Translates to: AGARGSMELTGCRCTQCLSAHGP*RSVSPA Trigger: AGCGGGAGACACAGATCGCCAAGGGCCATGAGCAGA...CAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR GCA 90 bp | GCTGGAGCTGGAGCACAGTCCCCTCCTTGTCCACCTGTGTTTCACCTCCTATTCGGCCTGGTCTTTCTCTaGAATACCAGCCTGCTCCCA | + |
Preference number: 4 (lower is better) Translates to: AGAGAQSPPCPPVFHLLFGLVFL*NTSLLP Trigger: TGGGAGCAGGCTGGTATTGCAGAGAAAGACCAGGCC...GAATAGGAGGTGAAACACAGGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076256.8 |
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CDS-3UTR GCA 90 bp | TCACAGGAGAGACATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGCGAGCTGCAGGTATCTaGGGAGCGACTGCATGCACG | + |
Preference number: 4 (lower is better) Translates to: SQERHEHIVCHSVQSRQLRAAGI*GATACT Trigger: CGTGCATGCAGTCGCTCCGCAGATACCTGCAGCTCG...CAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR GCA 90 bp | GGATGTCACAGGAGAGACATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCCTCCTTGTCCACCTGTaGGCAGCAGCGTCTCCTTCC | + |
Preference number: 4 (lower is better) Translates to: GCHRRDMNTSSVTQCSPGLLVHL*AAASPS Trigger: GGAAGGAGACGCTGCTGCGCACAGGTGGACAAGGAG...GCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTGACATCC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116598.10 |
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CDS-3UTR GCA 90 bp | CATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATGCTGGCTCCCTCGGAAACTCTaGTCATGGCCCTTGGCGATC | + |
Preference number: 4 (lower is better) Translates to: HEHIVCHSVQSRQLSSCWLPRKL*SWPLAI Trigger: GATCGCCAAGGGCCATGAGCAGAGTTTCCGAGGGAG...CCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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CDS-3UTR GCA 90 bp | AAGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGCTCCCTCGGAAACTCTaGTCATGGCCCTTGGCGATC | + |
Preference number: 4 (lower is better) Translates to: KVTYSSCESMELELGAAWLPRKL*SWPLAI Trigger: GATCGCCAAGGGCCATGAGCAGAGTTTCCGAGGGAG...CCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR GCA 90 bp | GGATGTCACAGGAGAGACATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCCTCCCTCGGAAACTCTaGTCATGGCCCTTGGCGATC | + |
Preference number: 4 (lower is better) Translates to: GCHRRDMNTSSVTQCSPGLPRKL*SWPLAI Trigger: GATCGCCAAGGGCCATGAGCAGAGTTTCCGAGGGAG...GCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTGACATCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR GCA 90 bp | ATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATGCTGGACGAGCTGCAGGTATCTaGGGAGCGACTGCATGCACG | + |
Preference number: 4 (lower is better) Translates to: MNTSSVTQCSPGSCLHAGRAAGI*GATACT Trigger: CGTGCATGCAGTCGCTCCGCAGATACCTGCAGCTCG...TCCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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CDS-3UTR GCA 90 bp | TCAAGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATCGAGCTGCAGGTATCTaGGGAGCGACTGCATGCACG | + |
Preference number: 4 (lower is better) Translates to: SRSHTLRVKVWSWSSGQHRAAGI*GATACT Trigger: CGTGCATGCAGTCGCTCCGCAGATACCTGCAGCTCG...ATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR CCA 90 bp | CATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATGCTGGGGTCACATGTGCCTTTaGGGGATCTGTGCGCAGCAG | + |
Preference number: 4 (lower is better) Translates to: HEHIVCHSVQSRQLSSCWGHMCL*GICAQQ Trigger: CTGCTGCGCACAGATCCCCCAAAGGCACATGTGACC...CCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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CDS-3UTR CCA 90 bp | GCTGGAGCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGGTTGGAGACAGTGTATaGAGGAGGCTCCCATCTCAG | + |
Preference number: 4 (lower is better) Translates to: AGARGSMELTGCRCTQCLVGDSV*RRLPSQ Trigger: CTGAGATGGGAGCCTCCTCCATACACTGTCTCCAAC...CAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076256.8 |
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CDS-3UTR GCA 90 bp | TGTCACAGGAGAGACATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCGGCCTGGTCTTTCTCTaGAATACCAGCCTGCTCCCA | + |
Preference number: 4 (lower is better) Translates to: CHRRDMNTSSVTQCSPGSGLVFL*NTSLLP Trigger: TGGGAGCAGGCTGGTATTGCAGAGAAAGACCAGGCC...GCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR CCA 90 bp | AGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGACGGGACACAGCGGTGTaGAAATATTGCAGCGAGTGT | + |
Preference number: 4 (lower is better) Translates to: RSHTLRVKVWSWSSGQHGRDTAV*KYCSEC Trigger: ACACTCGCTGCAATATTTCCACACCGCTGTGTCCCG...TCCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR CCA 90 bp | CTCTGGATGTCACAGGAGAGACATGAACACATCGTCTGTCACTCAGTGCAGTCCCGGGACACAGCGGTGTaGAAATATTGCAGCGAGTGT | + |
Preference number: 4 (lower is better) Translates to: LWMSQERHEHIVCHSVQSRDTAV*KYCSEC Trigger: ACACTCGCTGCAATATTTCCACACCGCTGTGTCCCG...GGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTGACATCCAGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR CAA 90 bp | AGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTCTCTGCTCATGGCCCTaGGCGATCTGTGTCTCCCGC | + |
Preference number: 5 (lower is better) Translates to: RKVGCGREQGSAGTGSRCLCSWP*AICVSR Trigger: GCGGGAGACACAGATCGCCAAGGGCCATGAGCAGAG...ACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR CAA 90 bp | GCTGGAGCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGAGCACAGTCCCCTCCTaGTCCACCTGTGCGCAGCAG | + |
Preference number: 5 (lower is better) Translates to: AGARGSMELTGCRCTQCLSTVPS*STCAQQ Trigger: CTGCTGCGCACAGGTGGACAAGGAGGGGACTGTGCT...CAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116598.10 |
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CDS CCA 90 bp | TGGCCACAGCTCCAAGGTCAACCACAACAGCAATGGTCGCCATGTTaGAGACAGTGTATGGAGGAGGCTCCCATCTCCCCCATCTCAGGG | + |
Preference number: 5 (lower is better) Translates to: WPQLQGQPQQQWSPC*RQCMEEAPISPISG Trigger: CCCTGAGATGGGGGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTGACCTTGGAGCTGTGGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071951.14 |
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CDS CCA 90 bp | AAGGTCAACCACAACAGCAATGGTCGCCATGTTGGAGACAGTGTATaGAGGAGGCTCCCATCTCCCCCATCTCAGGGTAAGGGGCTCAGG | + |
Preference number: 5 (lower is better) Translates to: KVNHNSNGRHVGDSV*RRLPSPPSQGKGLR Trigger: CCTGAGCCCCTTACCCTGAGATGGGGGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTGACCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071951.14 |
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CDS-3UTR CAA 90 bp | AGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGAATATTGCAGCGAGTGTaGGCCCGCGCGGGTCTCGAT | + |
Preference number: 5 (lower is better) Translates to: RSHTLRVKVWSWSSGQHGILQRV*ARAGLD Trigger: ATCGAGACCCGCGCGGGCCAACACTCGCTGCAATAT...TCCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR CAA 90 bp | CCCAGTGTTTGGCTGGAACAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCGCAATGGTCGCCATGTaGGAGACAGTGTATGGAGGA | + |
Preference number: 5 (lower is better) Translates to: PSVWLEQEGWLWKGTGQCAMVAM*ETVYGG Trigger: TCCTCCATACACTGTCTCCAACATGGCGACCATTGC...GCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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CDS-3UTR CAA 90 bp | AGGAGAGACATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTATATTGCAGCGAGTGTaGGCCCGCGCGGGTCTCGAT | + |
Preference number: 5 (lower is better) Translates to: RRDMNTSSVTQCSPGSCLILQRV*ARAGLD Trigger: ATCGAGACCCGCGCGGGCCAACACTCGCTGCAATAT...AAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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CDS-3UTR CAA 90 bp | GACATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATGCTATATTGCAGCGAGTGTaGGCCCGCGCGGGTCTCGAT | + |
Preference number: 5 (lower is better) Translates to: DMNTSSVTQCSPGSCLHAILQRV*ARAGLD Trigger: ATCGAGACCCGCGCGGGCCAACACTCGCTGCAATAT...AGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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CDS-3UTR CAA 90 bp | TCAAGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATATATTGCAGCGAGTGTaGGCCCGCGCGGGTCTCGAT | + |
Preference number: 5 (lower is better) Translates to: SRSHTLRVKVWSWSSGQHILQRV*ARAGLD Trigger: ATCGAGACCCGCGCGGGCCAACACTCGCTGCAATAT...ATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 ENSMUST00000078205.14 ENSMUST00000116598.10 |
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CDS-3UTR CAA 90 bp | AGTGTTTGGCTGGAACAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGCAATGGTCGCCATGTaGGAGACAGTGTATGGAGGA | + |
Preference number: 5 (lower is better) Translates to: SVWLEQEGWLWKGTGQCRAMVAM*ETVYGG Trigger: TCCTCCATACACTGTCTCCAACATGGCGACCATTGC...CCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071951.14 ENSMUST00000076256.8 |
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CDS CCA 72 bp | CACAACAGCAATGGTCGCCATGTTGGAGACAGTGTATaGAGGAGGCTCCCATCTCAGGGTAAGGGGCTCAGG | + |
Preference number: 6 (lower is better) Translates to: HNSNGRHVGDSV*RRLPSQGKGLR Trigger: CCTGAGCCCCTTACCCTGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076256.8 |
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CDS CAA 90 bp | AATGATGGCCACAGCTCCAAAACCACAACAGCAATGGTCGCCATGTaGGAGACAGTGTATGGAGGAGGCTCCCATCTCAGGGTAAGGGGC | + |
Preference number: 6 (lower is better) Translates to: NDGHSSKTTTAMVAM*ETVYGGGSHLRVRG Trigger: GCCCCTTACCCTGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTTTGGAGCTGTGGCCATCATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076256.8 |
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CDS CAA 72 bp | CACAGCTCCAAAACCACAACAGCAATGGTCGCCATGTaGGAGACAGTGTATGGAGGAGGCTCCCATCTCAGG | + |
Preference number: 6 (lower is better) Translates to: HSSKTTTAMVAM*ETVYGGGSHLR Trigger: CCTGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTTTGGAGCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076256.8 |
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CDS CCA 72 bp | CCAATGATGGCCACAGCTCCAAAACCACAACAGCAATaGTCGCCATGTTGGAGACAGTGTATGGAGGAGGCT | + |
Preference number: 6 (lower is better) Translates to: PMMATAPKPQQQ*SPCWRQCMEEA Trigger: AGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTTTGGAGCTGTGGCCATCATTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076256.8 |