RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for H2-Q7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060550

Ensembl transcript IDs: ENSMUST00000071951.14, ENSMUST00000076256.8, ENSMUST00000078205.14, ENSMUST00000116598.10

Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GATGTAGATGTACCCAGTGTTTGGCTGGAACAGGAAGGTTGGCTGTaGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGG +
Preference number: 1 (lower is better)
Translates to: DVDVPSVWLEQEGWL*KGTGQCRDRVQVCR
Trigger: CCTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGGTACATCTACATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
3UTR GCA 90 bp GAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATaGTGGAGCTGGAGCACAGTCCCCTCCTTGTCCACCTGTGTTTCA +
Preference number: 1 (lower is better)
Translates to: EHIVCHSVQSRQLSS*WSWSTVPSLSTCVS
Trigger: TGAAACACAGGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076256.8
3UTR TCA 90 bp TCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGAGCTaGCAGGATGTAGATGTACCCAGTGTTTGGCTGGAACAGGAAGGT +
Preference number: 1 (lower is better)
Translates to: SSCESMELELGAAWS*QDVDVPSVWLEQEG
Trigger: ACCTTCCTGTTCCAGCCAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
3UTR TCA 90 bp CCCTCAGCTCAAGATGATAACAATCAAGGTCACATACTCTTCGTGTaGAAGTATGGAGCTGGAGCTCGGGGCAGCATGGAGCTGACAGGA +
Preference number: 1 (lower is better)
Translates to: PSAQDDNNQGHILFV*KYGAGARGSMELTG
Trigger: TCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTTGATTGTTATCATCTTGAGCTGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
3UTR-3UTR TCA 90 bp GTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGGGGTCACAGGAGAGACATaGACACATCGTCTGTCACTC +
Preference number: 2 (lower is better)
Translates to: VGCGREQGSAGTGSRCAGVTGET*THRLSL
Trigger: GAGTGACAGACGATGTGTTCATGTCTCTCCTGTGAC...CCCTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
3UTR CAA 90 bp GCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTaGGCTGGAACAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTG +
Preference number: 2 (lower is better)
Translates to: ARGSMELTGCRCTQC*AGTGRLAVEGNRAV
Trigger: CACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
3UTR-3UTR TCA 90 bp AGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGGTCACAGGAGAGACATaGACACATCGTCTGTCACTC +
Preference number: 2 (lower is better)
Translates to: RLAVEGNRAVQGQGPGVQVTGET*THRLSL
Trigger: GAGTGACAGACGATGTGTTCATGTCTCTCCTGTGAC...CTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
3UTR-3UTR GCA 90 bp GCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGGCTGGAAGGCAGCTGTCTTCATaGTGGAGCTGGAGCACAGTC +
Preference number: 2 (lower is better)
Translates to: ARGSMELTGCRCTQCLAGRQLSS*WSWSTV
Trigger: GACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCT...TCCAGCCAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
3UTR-3UTR CCA 90 bp AAGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGCAGCTGTCTTCATGCTaGAGCTGGAGCACAGTCCCC +
Preference number: 2 (lower is better)
Translates to: KVTYSSCESMELELGAAWQLSSC*SWSTVP
Trigger: GGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTG...CCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
3UTR-3UTR TCA 90 bp GCTGGAGCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGGTCACAGGAGAGACATaGACACATCGTCTGTCACTC +
Preference number: 2 (lower is better)
Translates to: AGARGSMELTGCRCTQCLVTGET*THRLSL
Trigger: GAGTGACAGACGATGTGTTCATGTCTCTCCTGTGAC...CAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
3UTR-3UTR GCA 90 bp GGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGGCTGGAACAGGAAGGCAGCTGTCTTCATaGTGGAGCTGGAGCACAGTC +
Preference number: 2 (lower is better)
Translates to: GSMELTGCRCTQCLAGTGRQLSS*WSWSTV
Trigger: GACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCT...TCCTGTTCCAGCCAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
3UTR-3UTR CCA 90 bp ATCAAGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATCTTCATGCTGGAGCTaGAGCACAGTCCCCTCCTTG +
Preference number: 2 (lower is better)
Translates to: IKVTYSSCESMELELGAASSCWS*STVPSL
Trigger: CAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGA...TGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
3UTR-3UTR CCA 90 bp AGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGATACCCAGTGTTTGGCTaGAACAGGAAGGTTGGCTGT +
Preference number: 2 (lower is better)
Translates to: RSHTLRVKVWSWSSGQHGYPVFG*NRKVGC
Trigger: ACAGCCAACCTTCCTGTTCCAGCCAAACACTGGGTA...TCCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
3UTR-3UTR CCA 90 bp CATAGGCTCACAGGGAACATGAGACACTGTTGTCTAAAGAGAACTGAGGGCTCTTCTTCATGCTGGAGCTaGAGCACAGTCCCCTCCTTG +
Preference number: 2 (lower is better)
Translates to: HRLTGNMRHCCLKRTEGSSSCWS*STVPSL
Trigger: CAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGA...AGAGCCCTCAGTTCTCTTTAGACAACAGTGTCTCATGTTCCCTGTGAGCCTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
3UTR GCA 72 bp GTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATaGTGGAGCTGGAGCACAGTCCCCTCCTTGTCCACC +
Preference number: 3 (lower is better)
Translates to: VCHSVQSRQLSS*WSWSTVPSLST
Trigger: GGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
3UTR CCA 72 bp GTACCCAGTGTTTGGCTGGAACAGGAAGGTTGGCTGTaGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAG +
Preference number: 3 (lower is better)
Translates to: VPSVWLEQEGWL*KGTGQCRDRVQ
Trigger: CTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
3UTR-3UTR CAA 90 bp CCCAGTGTTTGGCTGGAACAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGCACAGTCCCCTCCTaGTCCACCTGTGTTTCACCT +
Preference number: 3 (lower is better)
Translates to: PSVWLEQEGWLWKGTGQCSTVPS*STCVSP
Trigger: AGGTGAAACACAGGTGGACAAGGAGGGGACTGTGCT...GCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076256.8
3UTR CCA 72 bp TGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATGCTaGAGCTGGAGCACAGTCCCCTCCTTGTCCACCTGT +
Preference number: 3 (lower is better)
Translates to: CHSVQSRQLSSC*SWSTVPSLSTC
Trigger: ACAGGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
3UTR CCA 72 bp TCAGTGCAGTCCAGGCAGCTGTCTTCATGCTGGAGCTaGAGCACAGTCCCCTCCTTGTCCACCTGTGTTTCA +
Preference number: 3 (lower is better)
Translates to: SVQSRQLSSCWS*STVPSLSTCVS
Trigger: TGAAACACAGGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCTGGACTGCACTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076256.8
3UTR-3UTR CAA 90 bp AAGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGGCTGGAACAGGAAGGTaGGCTGTGGAAGGGAACAGG +
Preference number: 3 (lower is better)
Translates to: KVTYSSCESMELELGAAWAGTGR*AVEGNR
Trigger: CCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGC...CCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
3UTR TCA 72 bp TGTGCAGGGCAGGCTGGGCTCCACAGTTCCTCACATTaGGTCCATAGGCTCACAGGGAACATGAGACACTGT +
Preference number: 3 (lower is better)
Translates to: CAGQAGLHSSSH*VHRLTGNMRHC
Trigger: ACAGTGTCTCATGTTCCCTGTGAGCCTATGGACTCAATGTGAGGAACTGTGGAGCCCAGCCTGCCCTGCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
3UTR GCA 72 bp CACAGGAGAGACATGAACACATCGTCTGTCACTCAGTaGAGTCCAGGCAGCTGTCTTCATGCTGGAGCTGGA +
Preference number: 3 (lower is better)
Translates to: HRRDMNTSSVTQ*SPGSCLHAGAG
Trigger: TCCAGCTCCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
3UTR TCA 72 bp CACAGGGAACATGAGACACTGTTGTCTAAAGAGAACTaGGGGCTCTGGATGTCACAGGAGAGACATGAACAC +
Preference number: 3 (lower is better)
Translates to: HREHETLLSKEN*GLWMSQERHEH
Trigger: GTGTTCATGTCTCTCCTGTGACATCCAGAGCCCTCAGTTCTCTTTAGACAACAGTGTCTCATGTTCCCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR TCA 90 bp AGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGCGTAGCCGACAGAGATaGACCAGGGCTCCCCGAGGC +
Preference number: 4 (lower is better)
Translates to: RLAVEGNRAVQGQGPGVQRSRQR*TRAPRG
Trigger: GCCTCGGGGAGCCCTGGTTCATCTCTGTCGGCTACG...CTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR TCA 90 bp CCCAGTGTTTGGCTGGAACAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCCGTAGCCGACAGAGATaGACCAGGGCTCCCCGAGGC +
Preference number: 4 (lower is better)
Translates to: PSVWLEQEGWLWKGTGQCRSRQR*TRAPRG
Trigger: GCCTCGGGGAGCCCTGGTTCATCTCTGTCGGCTACG...GCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR GCA 90 bp GTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGGGCTCCCTCGGAAACTCTaGTCATGGCCCTTGGCGATC +
Preference number: 4 (lower is better)
Translates to: VGCGREQGSAGTGSRCAGLPRKL*SWPLAI
Trigger: GATCGCCAAGGGCCATGAGCAGAGTTTCCGAGGGAG...CCCTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR GCA 90 bp GTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGGGGTTGTAGTAGCTCTGTaGGGTCCTCAGGCTCCCTCG +
Preference number: 4 (lower is better)
Translates to: VGCGREQGSAGTGSRCAGVVVAL*GPQAPS
Trigger: CGAGGGAGCCTGAGGACCGCACAGAGCTACTACAAC...CCCTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR TCA 90 bp GCTGGAGCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGCGTAGCCGACAGAGATaGACCAGGGCTCCCCGAGGC +
Preference number: 4 (lower is better)
Translates to: AGARGSMELTGCRCTQCLRSRQR*TRAPRG
Trigger: GCCTCGGGGAGCCCTGGTTCATCTCTGTCGGCTACG...CAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR TCA 90 bp GGAGCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGGCTCGTAGCCGACAGAGATaGACCAGGGCTCCCCGAGGC +
Preference number: 4 (lower is better)
Translates to: GARGSMELTGCRCTQCLARSRQR*TRAPRG
Trigger: GCCTCGGGGAGCCCTGGTTCATCTCTGTCGGCTACG...AGCCAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR GCA 90 bp TCCAGGCAGCTGTCTTCATGCTGGAGCTGGAGCACAGTCCCCTCCTTGTCCACCCGAGCTGCAGGTATCTaGGGAGCGACTGCATGCACG +
Preference number: 4 (lower is better)
Translates to: SRQLSSCWSWSTVPSLSTRAAGI*GATACT
Trigger: CGTGCATGCAGTCGCTCCGCAGATACCTGCAGCTCG...GGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
CDS-3UTR CCA 90 bp CAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGGGTCACATGTGCCTTTaGGGGATCTGTGCGCAGCAG +
Preference number: 4 (lower is better)
Translates to: QEGWLWKGTGQCRDRVQVGHMCL*GICAQQ
Trigger: CTGCTGCGCACAGATCCCCCAAAGGCACATGTGACC...CACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
CDS-3UTR GCA 90 bp AGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGCAGGGCCTGGTCTTTCTCTaGAATACCAGCCTGCTCCCA +
Preference number: 4 (lower is better)
Translates to: RLAVEGNRAVQGQGPGVQGLVFL*NTSLLP
Trigger: TGGGAGCAGGCTGGTATTGCAGAGAAAGACCAGGCC...CTGCACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR CCA 90 bp AGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTGGTCACATGTGCCTTTaGGGGATCTGTGCGCAGCAG +
Preference number: 4 (lower is better)
Translates to: RKVGCGREQGSAGTGSRCGHMCL*GICAQQ
Trigger: CTGCTGCGCACAGATCCCCCAAAGGCACATGTGACC...ACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
CDS-3UTR GCA 90 bp CCCAGTGTTTGGCTGGAACAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCGGCCTGGTCTTTCTCTaGAATACCAGCCTGCTCCCA +
Preference number: 4 (lower is better)
Translates to: PSVWLEQEGWLWKGTGQCGLVFL*NTSLLP
Trigger: TGGGAGCAGGCTGGTATTGCAGAGAAAGACCAGGCC...GCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR CCA 90 bp TCCAGGCAGCTGTCTTCATGCTGGAGCTGGAGCACAGTCCCCTCCTTGTCCACCCGGGACACAGCGGTGTaGAAATATTGCAGCGAGTGT +
Preference number: 4 (lower is better)
Translates to: SRQLSSCWSWSTVPSLSTRDTAV*KYCSEC
Trigger: ACACTCGCTGCAATATTTCCACACCGCTGTGTCCCG...GGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGCATGAAGACAGCTGCCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
CDS-3UTR CCA 90 bp AGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTCGGGACACAGCGGTGTaGAAATATTGCAGCGAGTGT +
Preference number: 4 (lower is better)
Translates to: RKVGCGREQGSAGTGSRCRDTAV*KYCSEC
Trigger: ACACTCGCTGCAATATTTCCACACCGCTGTGTCCCG...ACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR CCA 90 bp GCTGGAGCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGTCTGCTCATGGCCCTTaGCGATCTGTGTCTCCCGCT +
Preference number: 4 (lower is better)
Translates to: AGARGSMELTGCRCTQCLSAHGP*RSVSPA
Trigger: AGCGGGAGACACAGATCGCCAAGGGCCATGAGCAGA...CAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR GCA 90 bp GCTGGAGCTGGAGCACAGTCCCCTCCTTGTCCACCTGTGTTTCACCTCCTATTCGGCCTGGTCTTTCTCTaGAATACCAGCCTGCTCCCA +
Preference number: 4 (lower is better)
Translates to: AGAGAQSPPCPPVFHLLFGLVFL*NTSLLP
Trigger: TGGGAGCAGGCTGGTATTGCAGAGAAAGACCAGGCC...GAATAGGAGGTGAAACACAGGTGGACAAGGAGGGGACTGTGCTCCAGCTCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076256.8
CDS-3UTR GCA 90 bp TCACAGGAGAGACATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGCGAGCTGCAGGTATCTaGGGAGCGACTGCATGCACG +
Preference number: 4 (lower is better)
Translates to: SQERHEHIVCHSVQSRQLRAAGI*GATACT
Trigger: CGTGCATGCAGTCGCTCCGCAGATACCTGCAGCTCG...CAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR GCA 90 bp GGATGTCACAGGAGAGACATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCCTCCTTGTCCACCTGTaGGCAGCAGCGTCTCCTTCC +
Preference number: 4 (lower is better)
Translates to: GCHRRDMNTSSVTQCSPGLLVHL*AAASPS
Trigger: GGAAGGAGACGCTGCTGCGCACAGGTGGACAAGGAG...GCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTGACATCC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000116598.10
CDS-3UTR GCA 90 bp CATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATGCTGGCTCCCTCGGAAACTCTaGTCATGGCCCTTGGCGATC +
Preference number: 4 (lower is better)
Translates to: HEHIVCHSVQSRQLSSCWLPRKL*SWPLAI
Trigger: GATCGCCAAGGGCCATGAGCAGAGTTTCCGAGGGAG...CCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
CDS-3UTR GCA 90 bp AAGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGCTCCCTCGGAAACTCTaGTCATGGCCCTTGGCGATC +
Preference number: 4 (lower is better)
Translates to: KVTYSSCESMELELGAAWLPRKL*SWPLAI
Trigger: GATCGCCAAGGGCCATGAGCAGAGTTTCCGAGGGAG...CCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR GCA 90 bp GGATGTCACAGGAGAGACATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCCTCCCTCGGAAACTCTaGTCATGGCCCTTGGCGATC +
Preference number: 4 (lower is better)
Translates to: GCHRRDMNTSSVTQCSPGLPRKL*SWPLAI
Trigger: GATCGCCAAGGGCCATGAGCAGAGTTTCCGAGGGAG...GCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTGACATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR GCA 90 bp ATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATGCTGGACGAGCTGCAGGTATCTaGGGAGCGACTGCATGCACG +
Preference number: 4 (lower is better)
Translates to: MNTSSVTQCSPGSCLHAGRAAGI*GATACT
Trigger: CGTGCATGCAGTCGCTCCGCAGATACCTGCAGCTCG...TCCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
CDS-3UTR GCA 90 bp TCAAGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATCGAGCTGCAGGTATCTaGGGAGCGACTGCATGCACG +
Preference number: 4 (lower is better)
Translates to: SRSHTLRVKVWSWSSGQHRAAGI*GATACT
Trigger: CGTGCATGCAGTCGCTCCGCAGATACCTGCAGCTCG...ATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR CCA 90 bp CATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATGCTGGGGTCACATGTGCCTTTaGGGGATCTGTGCGCAGCAG +
Preference number: 4 (lower is better)
Translates to: HEHIVCHSVQSRQLSSCWGHMCL*GICAQQ
Trigger: CTGCTGCGCACAGATCCCCCAAAGGCACATGTGACC...CCAGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
CDS-3UTR CCA 90 bp GCTGGAGCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGGTTGGAGACAGTGTATaGAGGAGGCTCCCATCTCAG +
Preference number: 4 (lower is better)
Translates to: AGARGSMELTGCRCTQCLVGDSV*RRLPSQ
Trigger: CTGAGATGGGAGCCTCCTCCATACACTGTCTCCAAC...CAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076256.8
CDS-3UTR GCA 90 bp TGTCACAGGAGAGACATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCGGCCTGGTCTTTCTCTaGAATACCAGCCTGCTCCCA +
Preference number: 4 (lower is better)
Translates to: CHRRDMNTSSVTQCSPGSGLVFL*NTSLLP
Trigger: TGGGAGCAGGCTGGTATTGCAGAGAAAGACCAGGCC...GCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR CCA 90 bp AGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGACGGGACACAGCGGTGTaGAAATATTGCAGCGAGTGT +
Preference number: 4 (lower is better)
Translates to: RSHTLRVKVWSWSSGQHGRDTAV*KYCSEC
Trigger: ACACTCGCTGCAATATTTCCACACCGCTGTGTCCCG...TCCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR CCA 90 bp CTCTGGATGTCACAGGAGAGACATGAACACATCGTCTGTCACTCAGTGCAGTCCCGGGACACAGCGGTGTaGAAATATTGCAGCGAGTGT +
Preference number: 4 (lower is better)
Translates to: LWMSQERHEHIVCHSVQSRDTAV*KYCSEC
Trigger: ACACTCGCTGCAATATTTCCACACCGCTGTGTCCCG...GGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCTGTGACATCCAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR CAA 90 bp AGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGACAGGGTCCAGGTGTCTCTGCTCATGGCCCTaGGCGATCTGTGTCTCCCGC +
Preference number: 5 (lower is better)
Translates to: RKVGCGREQGSAGTGSRCLCSWP*AICVSR
Trigger: GCGGGAGACACAGATCGCCAAGGGCCATGAGCAGAG...ACACCTGGACCCTGTCCCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR CAA 90 bp GCTGGAGCTCGGGGCAGCATGGAGCTGACAGGATGTAGATGTACCCAGTGTTTGAGCACAGTCCCCTCCTaGTCCACCTGTGCGCAGCAG +
Preference number: 5 (lower is better)
Translates to: AGARGSMELTGCRCTQCLSTVPS*STCAQQ
Trigger: CTGCTGCGCACAGGTGGACAAGGAGGGGACTGTGCT...CAAACACTGGGTACATCTACATCCTGTCAGCTCCATGCTGCCCCGAGCTCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000116598.10
CDS CCA 90 bp TGGCCACAGCTCCAAGGTCAACCACAACAGCAATGGTCGCCATGTTaGAGACAGTGTATGGAGGAGGCTCCCATCTCCCCCATCTCAGGG +
Preference number: 5 (lower is better)
Translates to: WPQLQGQPQQQWSPC*RQCMEEAPISPISG
Trigger: CCCTGAGATGGGGGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTGACCTTGGAGCTGTGGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071951.14
CDS CCA 90 bp AAGGTCAACCACAACAGCAATGGTCGCCATGTTGGAGACAGTGTATaGAGGAGGCTCCCATCTCCCCCATCTCAGGGTAAGGGGCTCAGG +
Preference number: 5 (lower is better)
Translates to: KVNHNSNGRHVGDSV*RRLPSPPSQGKGLR
Trigger: CCTGAGCCCCTTACCCTGAGATGGGGGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTGACCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071951.14
CDS-3UTR CAA 90 bp AGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATGGAATATTGCAGCGAGTGTaGGCCCGCGCGGGTCTCGAT +
Preference number: 5 (lower is better)
Translates to: RSHTLRVKVWSWSSGQHGILQRV*ARAGLD
Trigger: ATCGAGACCCGCGCGGGCCAACACTCGCTGCAATAT...TCCATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR CAA 90 bp CCCAGTGTTTGGCTGGAACAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCGCAATGGTCGCCATGTaGGAGACAGTGTATGGAGGA +
Preference number: 5 (lower is better)
Translates to: PSVWLEQEGWLWKGTGQCAMVAM*ETVYGG
Trigger: TCCTCCATACACTGTCTCCAACATGGCGACCATTGC...GCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
CDS-3UTR CAA 90 bp AGGAGAGACATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTATATTGCAGCGAGTGTaGGCCCGCGCGGGTCTCGAT +
Preference number: 5 (lower is better)
Translates to: RRDMNTSSVTQCSPGSCLILQRV*ARAGLD
Trigger: ATCGAGACCCGCGCGGGCCAACACTCGCTGCAATAT...AAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTCTCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
CDS-3UTR CAA 90 bp GACATGAACACATCGTCTGTCACTCAGTGCAGTCCAGGCAGCTGTCTTCATGCTATATTGCAGCGAGTGTaGGCCCGCGCGGGTCTCGAT +
Preference number: 5 (lower is better)
Translates to: DMNTSSVTQCSPGSCLHAILQRV*ARAGLD
Trigger: ATCGAGACCCGCGCGGGCCAACACTCGCTGCAATAT...AGCATGAAGACAGCTGCCTGGACTGCACTGAGTGACAGACGATGTGTTCATGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
CDS-3UTR CAA 90 bp TCAAGGTCACATACTCTTCGTGTGAAAGTATGGAGCTGGAGCTCGGGGCAGCATATATTGCAGCGAGTGTaGGCCCGCGCGGGTCTCGAT +
Preference number: 5 (lower is better)
Translates to: SRSHTLRVKVWSWSSGQHILQRV*ARAGLD
Trigger: ATCGAGACCCGCGCGGGCCAACACTCGCTGCAATAT...ATGCTGCCCCGAGCTCCAGCTCCATACTTTCACACGAAGAGTATGTGACCTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
ENSMUST00000078205.14
ENSMUST00000116598.10
CDS-3UTR CAA 90 bp AGTGTTTGGCTGGAACAGGAAGGTTGGCTGTGGAAGGGAACAGGGCAGTGCAGGGCAATGGTCGCCATGTaGGAGACAGTGTATGGAGGA +
Preference number: 5 (lower is better)
Translates to: SVWLEQEGWLWKGTGQCRAMVAM*ETVYGG
Trigger: TCCTCCATACACTGTCTCCAACATGGCGACCATTGC...CCTGCACTGCCCTGTTCCCTTCCACAGCCAACCTTCCTGTTCCAGCCAAACACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071951.14
ENSMUST00000076256.8
CDS CCA 72 bp CACAACAGCAATGGTCGCCATGTTGGAGACAGTGTATaGAGGAGGCTCCCATCTCAGGGTAAGGGGCTCAGG +
Preference number: 6 (lower is better)
Translates to: HNSNGRHVGDSV*RRLPSQGKGLR
Trigger: CCTGAGCCCCTTACCCTGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076256.8
CDS CAA 90 bp AATGATGGCCACAGCTCCAAAACCACAACAGCAATGGTCGCCATGTaGGAGACAGTGTATGGAGGAGGCTCCCATCTCAGGGTAAGGGGC +
Preference number: 6 (lower is better)
Translates to: NDGHSSKTTTAMVAM*ETVYGGGSHLRVRG
Trigger: GCCCCTTACCCTGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTTTGGAGCTGTGGCCATCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076256.8
CDS CAA 72 bp CACAGCTCCAAAACCACAACAGCAATGGTCGCCATGTaGGAGACAGTGTATGGAGGAGGCTCCCATCTCAGG +
Preference number: 6 (lower is better)
Translates to: HSSKTTTAMVAM*ETVYGGGSHLR
Trigger: CCTGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTTTGGAGCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076256.8
CDS CCA 72 bp CCAATGATGGCCACAGCTCCAAAACCACAACAGCAATaGTCGCCATGTTGGAGACAGTGTATGGAGGAGGCT +
Preference number: 6 (lower is better)
Translates to: PMMATAPKPQQQ*SPCWRQCMEEA
Trigger: AGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTTTGGAGCTGTGGCCATCATTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076256.8