Pregenerated sensors for H2-Q6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073409Ensembl transcript IDs: ENSMUST00000113879.4, ENSMUST00000174699.8
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACTGCAGACCAGGAAGGTTGGCGGTGGAAGGGAACACAGGGCAATaGAGAGACAGGGTCCTGGTGTGTAGGCGAAGGCTGGGCTCCACA | + |
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Preference number: 1 (lower is better) Translates to: HCRPGRLAVEGNTGQ*RDRVLVCRRRLGST Trigger: TGTGGAGCCCAGCCTTCGCCTACACACCAGGACCCTGTCTCTGCATTGCCCTGTGTTCCCTTCCACCGCCAACCTTCCTGGTCTGCAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR GCA 90 bp | CACAACGCCATCCAACCGACTTTCCAAAGAACCCTTAGTTTCCACTaGAGACCAGGAAGGTTGGCGGTGGAAGGGAACACAGGGCAATGC | + |
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Preference number: 1 (lower is better) Translates to: HNAIQPTFQRTLSFH*RPGRLAVEGNTGQC Trigger: GCATTGCCCTGTGTTCCCTTCCACCGCCAACCTTCCTGGTCTGCAGTGGAAACTAAGGGTTCTTTGGAAAGTCGGTTGGATGGCGTTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CCA 90 bp | GGAGACTACACTTGGGAGCAACTCTCATGTGAGTTGTCTGGACGTTaGCAGTTCAATTCACAGGTCAGCAGTGGCAGCTCCATCCACTTG | + |
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Preference number: 1 (lower is better) Translates to: GDYTWEQLSCELSGR*QFNSQVSSGSSIHL Trigger: CAAGTGGATGGAGCTGCCACTGCTGACCTGTGAATTGAACTGCCAACGTCCAGACAACTCACATGAGAGTTGCTCCCAAGTGTAGTCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR GCA 90 bp | TGTCCTTGGAAGCATCAACTGCAGAATACTATCAGAATTTTTGGGTaGGTTTCTCTCTATGGCGCCCCGACCAATGCAGCTCCACTACAC | + |
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Preference number: 1 (lower is better) Translates to: CPWKHQLQNTIRIFG*VSLYGAPTNAAPLH Trigger: GTGTAGTGGAGCTGCATTGGTCGGGGCGCCATAGAGAGAAACGCACCCAAAAATTCTGATAGTATTCTGCAGTTGATGCTTCCAAGGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CCA 90 bp | GACACACACTGTACCAGCAAGGCAAACTCTGTCTCAGTCACTCCATaGAGTCCTATTTATACTCTCCAGTCATCATGTGTCCTCCAAGCG | + |
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Preference number: 1 (lower is better) Translates to: DTHCTSKANSVSVTP*SPIYTLQSSCVLQA Trigger: CGCTTGGAGGACACATGATGACTGGAGAGTATAAATAGGACTCCATGGAGTGACTGAGACAGAGTTTGCCTTGCTGGTACAGTGTGTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR TCA 90 bp | GTTGGCAGTTCAATTCACAGGTCAGCAGTGGCAGCTCCATCCACTTaGAAACACCTCAGGGATATAGCAGTTGTTCAGTTCAGTAGAGTC | + |
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Preference number: 1 (lower is better) Translates to: VGSSIHRSAVAAPST*KHLRDIAVVQFSRV Trigger: GACTCTACTGAACTGAACAACTGCTATATCCCTGAGGTGTTTTCAAGTGGATGGAGCTGCCACTGCTGACCTGTGAATTGAACTGCCAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR TCA 90 bp | ACATGCTTGTTTAACAGAACATCCTCTCTCCTGTGTCTGCTTCAGTaGAATGTTCCTTCAGGAGTCGGCCTTAGGATTTCACACCTGTAT | + |
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Preference number: 1 (lower is better) Translates to: TCLFNRTSSLLCLLQ*NVPSGVGLRISHLY Trigger: ATACAGGTGTGAAATCCTAAGGCCGACTCCTGAAGGAACATTTCACTGAAGCAGACACAGGAGAGAGGATGTTCTGTTAAACAAGCATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR GCA 90 bp | ATCCTTTCACATGCTTGTTTAACAGAACATCCTCTCTCCTGTGTCTaGTTCAGTGAAATGTTCCTTCAGGAGTCGGCCTTAGGATTTCAC | + |
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Preference number: 1 (lower is better) Translates to: ILSHACLTEHPLSCV*FSEMFLQESALGFH Trigger: GTGAAATCCTAAGGCCGACTCCTGAAGGAACATTTCACTGAAGCAGACACAGGAGAGAGGATGTTCTGTTAAACAAGCATGTGAAAGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CAA 90 bp | GGCTGGGGGAGGGGAGACTACACTTGGGAGCAACTCTCATGTGAGTaGTCTGGACGTTGGCAGTTCAATTCACAGGTCAGCAGTGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: GWGRGDYTWEQLSCE*SGRWQFNSQVSSGS Trigger: GCTGCCACTGCTGACCTGTGAATTGAACTGCCAACGTCCAGACAACTCACATGAGAGTTGCTCCCAAGTGTAGTCTCCCCTCCCCCAGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CAA 90 bp | CCGACTTTCCAAAGAACCCTTAGTTTCCACTGCAGACCAGGAAGGTaGGCGGTGGAAGGGAACACAGGGCAATGCAGAGACAGGGTCCTG | + |
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Preference number: 2 (lower is better) Translates to: PTFQRTLSFHCRPGR*AVEGNTGQCRDRVL Trigger: CAGGACCCTGTCTCTGCATTGCCCTGTGTTCCCTTCCACCGCCAACCTTCCTGGTCTGCAGTGGAAACTAAGGGTTCTTTGGAAAGTCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR CCA 90 bp | TGTTGCGACACTAGTTATGAAGGAAGGGGGAGGGGACCCGATTCCCGCCGAATATTCACAGGTCAGCAGTaGCAGCTCCATCCACTTGAA | + |
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Preference number: 2 (lower is better) Translates to: CCDTSYEGRGRGPDSRRIFTGQQ*QLHPLE Trigger: TTCAAGTGGATGGAGCTGCCACTGCTGACCTGTGAA...TATTCGGCGGGAATCGGGTCCCCTCCCCCTTCCTTCATAACTAGTGTCGCAACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR TCA 90 bp | GTTTCAGGCTGGGGGAGGGGAGACTACACTTGGGAGCAACTCTCATGTGAGTTGGCAGCTCCATCCACTTaGAAACACCTCAGGGATATA | + |
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Preference number: 2 (lower is better) Translates to: VSGWGRGDYTWEQLSCELAAPST*KHLRDI Trigger: TATATCCCTGAGGTGTTTTCAAGTGGATGGAGCTGC...CAACTCACATGAGAGTTGCTCCCAAGTGTAGTCTCCCCTCCCCCAGCCTGAAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR CCA 90 bp | ATCCACTTTAAGGAAACACTCCTTCATGTGTTTGCCCCAGCACAACGCCATCCACAGGAAGGTTGGCGGTaGAAGGGAACACAGGGCAAT | + |
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Preference number: 2 (lower is better) Translates to: IHFKETLLHVFAPAQRHPQEGWR*KGTQGN Trigger: ATTGCCCTGTGTTCCCTTCCACCGCCAACCTTCCTG...TGGATGGCGTTGTGCTGGGGCAAACACATGAAGGAGTGTTTCCTTAAAGTGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR GCA 90 bp | CTCTCCTGTGTCTGCTTCAGTGAAATGTTCCTTCAGGAGTCGGCCTTAGGATTTACTCCTTCATGTGTTTaGCCCAGCACAACGCCATCC | + |
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Preference number: 2 (lower is better) Translates to: LSCVCFSEMFLQESALGFTPSCV*PSTTPS Trigger: GGATGGCGTTGTGCTGGGGCAAACACATGAAGGAGT...AAATCCTAAGGCCGACTCCTGAAGGAACATTTCACTGAAGCAGACACAGGAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTCCTGTGTCTGCTTCAGTGAAATGTTCCTTCAGGAGTCGGCCTTAGGATTTCACAATTCTTCACATTaGGCCCATAGGCTCACAGGG | + |
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Preference number: 2 (lower is better) Translates to: LSCVCFSEMFLQESALGFHNSSH*AHRLTG Trigger: CCCTGTGAGCCTATGGGCTCAATGTGAAGAATTGTG...AAATCCTAAGGCCGACTCCTGAAGGAACATTTCACTGAAGCAGACACAGGAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR CCA 90 bp | AGTTGTCTGGACGTTGGCAGTTCAATTCACAGGTCAGCAGTGGCAGCTCCATCCGTCTCAGTCACTCCATaGAGTCCTATTTATACTCTC | + |
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Preference number: 2 (lower is better) Translates to: SCLDVGSSIHRSAVAAPSVSVTP*SPIYTL Trigger: GAGAGTATAAATAGGACTCCATGGAGTGACTGAGAC...GGATGGAGCTGCCACTGCTGACCTGTGAATTGAACTGCCAACGTCCAGACAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR TCA 90 bp | CATGGAGTCCTATTTATACTCTCCAGTCATCATGTGTCCTCCAAGCGTCTTGCCCTGTGTCTGCTTCAGTaGAATGTTCCTTCAGGAGTC | + |
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Preference number: 2 (lower is better) Translates to: HGVLFILSSHHVSSKRLALCLLQ*NVPSGV Trigger: GACTCCTGAAGGAACATTTCACTGAAGCAGACACAG...GGCAAGACGCTTGGAGGACACATGATGACTGGAGAGTATAAATAGGACTCCATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR CCA 90 bp | TCCATGGAGTCCTATTTATACTCTCCAGTCATCATGTGTCCTCCAAGCGTCTTGTACTATCAGAATTTTTaGGTGCGTTTCTCTCTATGG | + |
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Preference number: 2 (lower is better) Translates to: SMESYLYSPVIMCPPSVLYYQNF*VRFSLW Trigger: CCATAGAGAGAAACGCACCCAAAAATTCTGATAGTA...CAAGACGCTTGGAGGACACATGATGACTGGAGAGTATAAATAGGACTCCATGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR GCA 90 bp | ATACCAGGAGAAGTTCTTTGCTGTACCTCTCTTATGGAAGTGAAGAACAGTGAAACGCATCCTTTCACATaGTTGTTTAACAGAACATCC | + |
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Preference number: 2 (lower is better) Translates to: IPGEVLCCTSLMEVKNSETHPFT*LFNRTS Trigger: GGATGTTCTGTTAAACAAGCATGTGAAAGGATGCGT...TTCACTGTTCTTCACTTCCATAAGAGAGGTACAGCAAAGAACTTCTCCTGGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR GCA 90 bp | CATTCTGATCAAAGCTCAAATTTTATTGTTGCGACACTAGTTATGAAGGAAGGGATCAGAATTTTTGGGTaGGTTTCTCTCTATGGCGCC | + |
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Preference number: 2 (lower is better) Translates to: HSDQSSNFIVATLVMKEGIRIFG*VSLYGA Trigger: GGCGCCATAGAGAGAAACGCACCCAAAAATTCTGAT...CCCTTCCTTCATAACTAGTGTCGCAACAATAAAATTTGAGCTTTGATCAGAATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR GCA 90 bp | CATTCTGATCAAAGCTCAAATTTTATTGTTGCGACACTAGTTATGAAGGAAGGGCCAGGAGAAGTTCTTTaGTGTACCTCTCTTATGGAA | + |
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Preference number: 2 (lower is better) Translates to: HSDQSSNFIVATLVMKEGPGEVL*CTSLME Trigger: TTCCATAAGAGAGGTACAGCAAAGAACTTCTCCTGG...CCCTTCCTTCATAACTAGTGTCGCAACAATAAAATTTGAGCTTTGATCAGAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CCA 72 bp | CCCTTAGTTTCCACTGCAGACCAGGAAGGTTGGCGGTaGAAGGGAACACAGGGCAATGCAGAGACAGGGTCC | + |
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Preference number: 3 (lower is better) Translates to: PLVSTADQEGWR*KGTQGNAETGS Trigger: GGACCCTGTCTCTGCATTGCCCTGTGTTCCCTTCCACCGCCAACCTTCCTGGTCTGCAGTGGAAACTAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR CAA 90 bp | TTCTCTCTATGGCGCCCCGACCAATGCAGCTCCACTACACAATGTAAGGCAGACTGCAGACCAGGAAGGTaGGCGGTGGAAGGGAACACA | + |
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Preference number: 3 (lower is better) Translates to: FSLWRPDQCSSTTQCKADCRPGR*AVEGNT Trigger: TGTGTTCCCTTCCACCGCCAACCTTCCTGGTCTGCA...GTCTGCCTTACATTGTGTAGTGGAGCTGCATTGGTCGGGGCGCCATAGAGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR TCA 72 bp | GGGGAGGGGAGACTACACTTGGGAGCAACTCTCATGTaGGTTGTCTGGACGTTGGCAGTTCAATTCACAGGT | + |
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Preference number: 3 (lower is better) Translates to: GEGRLHLGATLM*VVWTLAVQFTG Trigger: ACCTGTGAATTGAACTGCCAACGTCCAGACAACTCACATGAGAGTTGCTCCCAAGTGTAGTCTCCCCTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CCA 72 bp | AAAGAACCCTTAGTTTCCACTGCAGACCAGGAAGGTTaGCGGTGGAAGGGAACACAGGGCAATGCAGAGACA | + |
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Preference number: 3 (lower is better) Translates to: KEPLVSTADQEG*RWKGTQGNAET Trigger: TGTCTCTGCATTGCCCTGTGTTCCCTTCCACCGCCAACCTTCCTGGTCTGCAGTGGAAACTAAGGGTTCTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CCA 72 bp | ACTTGGGAGCAACTCTCATGTGAGTTGTCTGGACGTTaGCAGTTCAATTCACAGGTCAGCAGTGGCAGCTCC | + |
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Preference number: 3 (lower is better) Translates to: TWEQLSCELSGR*QFNSQVSSGSS Trigger: GGAGCTGCCACTGCTGACCTGTGAATTGAACTGCCAACGTCCAGACAACTCACATGAGAGTTGCTCCCAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR GCA 72 bp | ATCCAACCGACTTTCCAAAGAACCCTTAGTTTCCACTaGAGACCAGGAAGGTTGGCGGTGGAAGGGAACACA | + |
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Preference number: 3 (lower is better) Translates to: IQPTFQRTLSFH*RPGRLAVEGNT Trigger: TGTGTTCCCTTCCACCGCCAACCTTCCTGGTCTGCAGTGGAAACTAAGGGTTCTTTGGAAAGTCGGTTGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CCA 72 bp | GTCTGGACGTTGGCAGTTCAATTCACAGGTCAGCAGTaGCAGCTCCATCCACTTGAAAACACCTCAGGGATA | + |
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Preference number: 3 (lower is better) Translates to: VWTLAVQFTGQQ*QLHPLENTSGI Trigger: TATCCCTGAGGTGTTTTCAAGTGGATGGAGCTGCCACTGCTGACCTGTGAATTGAACTGCCAACGTCCAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR CAA 90 bp | AGTTGTCTGGACGTTGGCAGTTCAATTCACAGGTCAGCAGTGGCAGCTCCATCCACCAGGAGAAGTTCTTaGCTGTACCTCTCTTATGGA | + |
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Preference number: 3 (lower is better) Translates to: SCLDVGSSIHRSAVAAPSTRRSS*LYLSYG Trigger: TCCATAAGAGAGGTACAGCAAAGAACTTCTCCTGGT...GGATGGAGCTGCCACTGCTGACCTGTGAATTGAACTGCCAACGTCCAGACAACT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR-3UTR CAA 90 bp | TCTCTCTATGGCGCCCCGACCAATGCAGCTCCACTACACAATGTAAGGCAGACCCATCCTTTCACATGCTaGTTTAACAGAACATCCTCT | + |
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Preference number: 3 (lower is better) Translates to: SLYGAPTNAAPLHNVRQTHPFTC*FNRTSS Trigger: AGAGGATGTTCTGTTAAACAAGCATGTGAAAGGATG...GGTCTGCCTTACATTGTGTAGTGGAGCTGCATTGGTCGGGGCGCCATAGAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR GCA 72 bp | AAGCATCAACTGCAGAATACTATCAGAATTTTTGGGTaGGTTTCTCTCTATGGCGCCCCGACCAATGCAGCT | + |
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Preference number: 3 (lower is better) Translates to: KHQLQNTIRIFG*VSLYGAPTNAA Trigger: AGCTGCATTGGTCGGGGCGCCATAGAGAGAAACGCACCCAAAAATTCTGATAGTATTCTGCAGTTGATGCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CCA 72 bp | GAATACTATCAGAATTTTTGGGTGCGTTTCTCTCTATaGCGCCCCGACCAATGCAGCTCCACTACACAATGT | + |
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Preference number: 3 (lower is better) Translates to: EYYQNFWVRFSL*RPDQCSSTTQC Trigger: ACATTGTGTAGTGGAGCTGCATTGGTCGGGGCGCCATAGAGAGAAACGCACCCAAAAATTCTGATAGTATTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CCA 72 bp | TTGGAAGCATCAACTGCAGAATACTATCAGAATTTTTaGGTGCGTTTCTCTCTATGGCGCCCCGACCAATGC | + |
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Preference number: 3 (lower is better) Translates to: LEASTAEYYQNF*VRFSLWRPDQC Trigger: GCATTGGTCGGGGCGCCATAGAGAGAAACGCACCCAAAAATTCTGATAGTATTCTGCAGTTGATGCTTCCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR GCA 72 bp | CATGCTTGTTTAACAGAACATCCTCTCTCCTGTGTCTaGTTCAGTGAAATGTTCCTTCAGGAGTCGGCCTTA | + |
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Preference number: 3 (lower is better) Translates to: HACLTEHPLSCV*FSEMFLQESAL Trigger: TAAGGCCGACTCCTGAAGGAACATTTCACTGAAGCAGACACAGGAGAGAGGATGTTCTGTTAAACAAGCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR GCA 72 bp | CAGGAAGGACCAGCAGGAATACCAGGAGAAGTTCTTTaGTGTACCTCTCTTATGGAAGTGAAGAACAGTGAA | + |
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Preference number: 3 (lower is better) Translates to: QEGPAGIPGEVL*CTSLMEVKNSE Trigger: TTCACTGTTCTTCACTTCCATAAGAGAGGTACAGCAAAGAACTTCTCCTGGTATTCCTGCTGGTCCTTCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CCA 72 bp | TGTACCAGCAAGGCAAACTCTGTCTCAGTCACTCCATaGAGTCCTATTTATACTCTCCAGTCATCATGTGTC | + |
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Preference number: 3 (lower is better) Translates to: CTSKANSVSVTP*SPIYTLQSSCV Trigger: GACACATGATGACTGGAGAGTATAAATAGGACTCCATGGAGTGACTGAGACAGAGTTTGCCTTGCTGGTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR TCA 72 bp | TTTAACAGAACATCCTCTCTCCTGTGTCTGCTTCAGTaGAATGTTCCTTCAGGAGTCGGCCTTAGGATTTCA | + |
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Preference number: 3 (lower is better) Translates to: FNRTSSLLCLLQ*NVPSGVGLRIS Trigger: TGAAATCCTAAGGCCGACTCCTGAAGGAACATTTCACTGAAGCAGACACAGGAGAGAGGATGTTCTGTTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR TCA 72 bp | TCTTTGCTGTACCTCTCTTATGGAAGTGAAGAACAGTaGAGACACAAGACACACACTGTACCAGCAAGGCAA | + |
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Preference number: 3 (lower is better) Translates to: SLLYLSYGSEEQ*RHKTHTVPARQ Trigger: TTGCCTTGCTGGTACAGTGTGTGTCTTGTGTCTTCACTGTTCTTCACTTCCATAAGAGAGGTACAGCAAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR TCA 72 bp | CAGGAGAAGTTCTTTGCTGTACCTCTCTTATGGAAGTaGAGAACAGTGAAGACACAAGACACACACTGTACC | + |
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Preference number: 3 (lower is better) Translates to: QEKFFAVPLLWK*RTVKTQDTHCT Trigger: GGTACAGTGTGTGTCTTGTGTCTTCACTGTTCTTCACTTCCATAAGAGAGGTACAGCAAAGAACTTCTCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR GCA 72 bp | TTTAGCAAAGAATCCTTCATCACGCATCCTTTCACATaGTTGTTTAACAGAACATCCTCTCTCCTGTGTCTG | + |
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Preference number: 3 (lower is better) Translates to: FSKESFITHPFT*LFNRTSSLLCL Trigger: CAGACACAGGAGAGAGGATGTTCTGTTAAACAAGCATGTGAAAGGATGCGTGATGAAGGATTCTTTGCTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| CDS-3UTR GCA 90 bp | TTTTGGGTGCGTTTCTCTCTATGGCGCCCCGACCAATGCAGCTCCACTACACAACCTTTGGGGGATCTGTaGACAGCAGCGTCTCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: FWVRFSLWRPDQCSSTTQPLGDL*TAASPS Trigger: GGAAGGAGACGCTGCTGTGCACAGATCCCCCAAAGG...TTGTGTAGTGGAGCTGCATTGGTCGGGGCGCCATAGAGAGAAACGCACCCAAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| CDS-3UTR CCA 90 bp | TGTTGCGACACTAGTTATGAAGGAAGGGGGAGGGGACCCGATTCCCGCCGAATAGGTCACATGTGCCTTTaGGGGATCTGTGCACAGCAG | + |
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Preference number: 4 (lower is better) Translates to: CCDTSYEGRGRGPDSRRIGHMCL*GICAQQ Trigger: CTGCTGTGCACAGATCCCCCAAAGGCACATGTGACC...TATTCGGCGGGAATCGGGTCCCCTCCCCCTTCCTTCATAACTAGTGTCGCAACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| CDS-3UTR CCA 90 bp | TTCTCTCTATGGCGCCCCGACCAATGCAGCTCCACTACACAATGTAAGGCAGACTCTCCTCATGGCCCTTaGCTTTCTGTGTCTCCCGCT | + |
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Preference number: 4 (lower is better) Translates to: FSLWRPDQCSSTTQCKADSPHGP*LSVSPA Trigger: AGCGGGAGACACAGAAAGCCAAGGGCCATGAGGAGA...GTCTGCCTTACATTGTGTAGTGGAGCTGCATTGGTCGGGGCGCCATAGAGAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| CDS-3UTR GCA 90 bp | TTTTGGGTGCGTTTCTCTCTATGGCGCCCCGACCAATGCAGCTCCACTACACAATCCTCCCCATTCAACTaGCAAGTCAGGGTGATGTCA | + |
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Preference number: 4 (lower is better) Translates to: FWVRFSLWRPDQCSSTTQSSPFN*QVRVMS Trigger: TGACATCACCCTGACTTGGCAGTTGAATGGGGAGGA...TTGTGTAGTGGAGCTGCATTGGTCGGGGCGCCATAGAGAGAAACGCACCCAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CAA 72 bp | CCTGTATCCACTTTAAGGAAACACTCCTTCATGTGTTaGCCCCAGCACAACGCCATCCAACCGACTTTCCAA | + |
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Preference number: 4 (lower is better) Translates to: PVSTLRKHSFMC*PQHNAIQPTFQ Trigger: TTGGAAAGTCGGTTGGATGGCGTTGTGCTGGGGCAAACACATGAAGGAGTGTTTCCTTAAAGTGGATACAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CAA 72 bp | TTCAATTCACAGGTCAGCAGTGGCAGCTCCATCCACTaGAAAACACCTCAGGGATATAGCAGTTGTTCAGTT | + |
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Preference number: 4 (lower is better) Translates to: FNSQVSSGSSIH*KTPQGYSSCSV Trigger: AACTGAACAACTGCTATATCCCTGAGGTGTTTTCAAGTGGATGGAGCTGCCACTGCTGACCTGTGAATTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| CDS-3UTR CCA 90 bp | CATTCTGATCAAAGCTCAAATTTTATTGTTGCGACACTAGTTATGAAGGAAGGGCGGAAACTCTCCTCATaGCCCTTGGCTTTCTGTGTC | + |
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Preference number: 4 (lower is better) Translates to: HSDQSSNFIVATLVMKEGRKLSS*PLAFCV Trigger: GACACAGAAAGCCAAGGGCCATGAGGAGAGTTTCCG...CCCTTCCTTCATAACTAGTGTCGCAACAATAAAATTTGAGCTTTGATCAGAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| 3UTR CAA 72 bp | AGCAAAGAATCCTTCATCACGCATCCTTTCACATGCTaGTTTAACAGAACATCCTCTCTCCTGTGTCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: SKESFITHPFTC*FNRTSSLLCLL Trigger: AAGCAGACACAGGAGAGAGGATGTTCTGTTAAACAAGCATGTGAAAGGATGCGTGATGAAGGATTCTTTGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| CDS-3UTR CAA 90 bp | TCTAGCAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCTGAGCAAGGGGTCACATGTGCCTTaGGGGGATCTGTGCACAGCA | + |
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Preference number: 5 (lower is better) Translates to: SSSGRGRTNEQEAPPLSKGSHVP*GDLCTA Trigger: TGCTGTGCACAGATCCCCCAAAGGCACATGTGACCC...CTTGCTCAGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCTAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| CDS-3UTR CAA 90 bp | ACAATTCTTCACATTGAGCCCATAGGCTCACAGGGAACATCAGACACTGTTCTCCTCTCCTCATGGCCCTaGGCTTTCTGTGTCTCCCGC | + |
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Preference number: 5 (lower is better) Translates to: TILHIEPIGSQGTSDTVLLSSWP*AFCVSR Trigger: GCGGGAGACACAGAAAGCCAAGGGCCATGAGGAGAG...GAGAACAGTGTCTGATGTTCCCTGTGAGCCTATGGGCTCAATGTGAAGAATTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| CDS-3UTR CAA 90 bp | CATGGAGTCCTATTTATACTCTCCAGTCATCATGTGTCCTCCAAGCGTCTTGCCCCAGCCTGCTCCCACTaGTGTAGGGTGATCTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: HGVLFILSSHHVSSKRLAPACSH*CRVICA Trigger: TGCACAGATCACCCTACACAAGTGGGAGCAGGCTGG...GGCAAGACGCTTGGAGGACACATGATGACTGGAGAGTATAAATAGGACTCCATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| CDS-3UTR CAA 90 bp | ATCCACTTTAAGGAAACACTCCTTCATGTGTTTGCCCCAGCACAACGCCATCCAGCTACGTTCGCCATGTaGGAGACAGTGGATGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: IHFKETLLHVFAPAQRHPATFAM*ETVDGG Trigger: TCCTCCATCCACTGTCTCCAACATGGCGAACGTAGC...TGGATGGCGTTGTGCTGGGGCAAACACATGAAGGAGTGTTTCCTTAAAGTGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174699.8 |
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| CDS CCA 72 bp | CCAGGACACAGCAGTGTGGAAATACCGCAGCGAGTGTaGGCCCGCGCGGGTCTCGATCAGGGTCAGGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: PGHSSVEIPQRV*ARAGLDQGQGG Trigger: GCCGCCCTGACCCTGATCGAGACCCGCGCGGGCCCACACTCGCTGCGGTATTTCCACACTGCTGTGTCCTGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113879.4 ENSMUST00000174699.8 |
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| CDS CAA 90 bp | GATGGCCAAGCTACAAGGACAACCAGAATAGCTACGTTCGCCATGTaGGAGACAGTGGATGGAGGAGGCTCCCATCTCAGGGTGAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: DGQATRTTRIATFAM*ETVDGGGSHLRVRG Trigger: GCCTCTCACCCTGAGATGGGAGCCTCCTCCATCCACTGTCTCCAACATGGCGAACGTAGCTATTCTGGTTGTCCTTGTAGCTTGGCCATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113879.4 ENSMUST00000174699.8 |
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