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Pregenerated sensors for H2-Q5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055413

Ensembl transcript IDs: ENSMUST00000172979.4

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 72 bp GCCTCATGCGACCTCCAGGTAGGCCCGGTCTCTCTCTaGAATACCAGCCTGCTCCCACTTGCGTCGGGTGAT +
Preference number: 6 (lower is better)
Translates to: ASCDLQVGPVSL*NTSLLPLASGD
Trigger: ATCACCCGACGCAAGTGGGAGCAGGCTGGTATTGCAGAGAGAGACCGGGCCTACCTGGAGGTCGCATGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172979.4
CDS CAA 90 bp ATGGCCACAGCTCCAAGGTCAACCACAACAGCAATGGTCGCCATGTaGGAGACAGTGTATGGAGGAGGCTCCCATCTCCCCCATCTCAGG +
Preference number: 6 (lower is better)
Translates to: MATAPRSTTTAMVAM*ETVYGGGSHLPHLR
Trigger: CCTGAGATGGGGGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTGACCTTGGAGCTGTGGCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000172979.4
CDS CCA 72 bp CACAACAGCAATGGTCGCCATGTTGGAGACAGTGTATaGAGGAGGCTCCCATCTCCCCCATCTCAGGGTGAG +
Preference number: 6 (lower is better)
Translates to: HNSNGRHVGDSV*RRLPSPPSQGE
Trigger: CTCACCCTGAGATGGGGGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000172979.4
CDS CAA 72 bp GCTCCAAGGTCAACCACAACAGCAATGGTCGCCATGTaGGAGACAGTGTATGGAGGAGGCTCCCATCTCCCC +
Preference number: 6 (lower is better)
Translates to: APRSTTTAMVAM*ETVYGGGSHLP
Trigger: GGGGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTGACCTTGGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172979.4