Pregenerated sensors for H2-Q5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055413

Ensembl transcript IDs: ENSMUST00000172979.4

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 72 bp	GCCTCATGCGACCTCCAGGTAGGCCCGGTCTCTCTCTaGAATACCAGCCTGCTCCCACTTGCGTCGGGTGAT	+
Preference number: 6 (lower is better) Translates to: ASCDLQVGPVSL*NTSLLPLASGD Trigger: ATCACCCGACGCAAGTGGGAGCAGGCTGGTATTGCAGAGAGAGACCGGGCCTACCTGGAGGTCGCATGAGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172979.4
CDS CAA 90 bp	ATGGCCACAGCTCCAAGGTCAACCACAACAGCAATGGTCGCCATGTaGGAGACAGTGTATGGAGGAGGCTCCCATCTCCCCCATCTCAGG	+
Preference number: 6 (lower is better) Translates to: MATAPRSTTTAMVAM*ETVYGGGSHLPHLR Trigger: CCTGAGATGGGGGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTGACCTTGGAGCTGTGGCCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172979.4
CDS CCA 72 bp	CACAACAGCAATGGTCGCCATGTTGGAGACAGTGTATaGAGGAGGCTCCCATCTCCCCCATCTCAGGGTGAG	+
Preference number: 6 (lower is better) Translates to: HNSNGRHVGDSV*RRLPSPPSQGE Trigger: CTCACCCTGAGATGGGGGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172979.4
CDS CAA 72 bp	GCTCCAAGGTCAACCACAACAGCAATGGTCGCCATGTaGGAGACAGTGTATGGAGGAGGCTCCCATCTCCCC	+
Preference number: 6 (lower is better) Translates to: APRSTTTAMVAM*ETVYGGGSHLP Trigger: GGGGAGATGGGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTGACCTTGGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172979.4

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