Pregenerated sensors for H2-Q2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091705Ensembl transcript IDs: ENSMUST00000074806.12, ENSMUST00000173115.2
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTGGCCAAGAGTTCCACAACTGGTTCCAGGAGGCCTCCTTCTTTTaGAGTATACCTCAGTCTGTGCAACTTGTCACATGGCTGCTACTG | + |
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Preference number: 1 (lower is better) Translates to: SGQEFHNWFQEASFF*SIPQSVQLVTWLLL Trigger: CAGTAGCAGCCATGTGACAAGTTGCACAGACTGAGGTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173115.2 |
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| 3UTR CCA 90 bp | TTTGAAGTATACCTCAGTCTGTGCAACTTGTCACATGGCTGCTACTaGGGTTGGTGTGGCAGAGAACATGAGACACCATTTTCTAAAGAA | + |
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Preference number: 1 (lower is better) Translates to: FEVYLSLCNLSHGCY*GWCGREHETPFSKE Trigger: TTCTTTAGAAAATGGTGTCTCATGTTCTCTGCCACACCAACCCCAGTAGCAGCCATGTGACAAGTTGCACAGACTGAGGTATACTTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173115.2 |
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| 3UTR-3UTR TCA 90 bp | TGGCCAAGAGTTCCACAACTGGTTCCAGGAGGCCTCCTTCTTTTGAAGTATACCGTCACAGGAGAGACCTaGACACACTGGCTGTCACTC | + |
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Preference number: 2 (lower is better) Translates to: WPRVPQLVPGGLLLLKYTVTGET*THWLSL Trigger: GAGTGACAGCCAGTGTGTTCAGGTCTCTCCTGTGAC...GGTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173115.2 |
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| 3UTR CCA 72 bp | TACCTCAGTCTGTGCAACTTGTCACATGGCTGCTACTaGGGTTGGTGTGGCAGAGAACATGAGACACCATTT | + |
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Preference number: 3 (lower is better) Translates to: YLSLCNLSHGCY*GWCGREHETPF Trigger: AAATGGTGTCTCATGTTCTCTGCCACACCAACCCCAGTAGCAGCCATGTGACAAGTTGCACAGACTGAGGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173115.2 |
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| CDS-3UTR TCA 90 bp | GGAGTCCCTGAAACCCAATCATGTCCACATTGCCCCTCCCCAATCAGGCACCAGCCCAGCACCTCAGGGTaGCATCACCTTGAGAACTGG | + |
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Preference number: 4 (lower is better) Translates to: GVPETQSCPHCPSPIRHQPSTSG*HHLENW Trigger: CCAGTTCTCAAGGTGATGTCACCCTGAGGTGCTGGG...CTGGTGCCTGATTGGGGAGGGGCAATGTGGACATGATTGGGTTTCAGGGACTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS-3UTR GCA 90 bp | GAGTCCCTGAAACCCAATCATGTCCACATTGCCCCTCCCCAATCAGGCACCAGACCTCCAGGTAGGCCCTaGGCTTCTCTGCAAGACCAG | + |
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Preference number: 4 (lower is better) Translates to: ESLKPNHVHIAPPQSGTRPPGRP*ASLQDQ Trigger: CTGGTCTTGCAGAGAAGCGCAGGGCCTACCTGGAGG...TCTGGTGCCTGATTGGGGAGGGGCAATGTGGACATGATTGGGTTTCAGGGACTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS-3UTR GCA 90 bp | TGGGAGTCCCTGAAACCCAATCATGTCCACATTGCCCCTCCCCAATCAGGCACCTTTGGGGGATCTGTGTaGAGCAGCGTCTCCTTCCCG | + |
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Preference number: 4 (lower is better) Translates to: WESLKPNHVHIAPPQSGTFGGSV*SSVSFP Trigger: CGGGAAGGAGACGCTGCTGCACACAGATCCCCCAAA...GGTGCCTGATTGGGGAGGGGCAATGTGGACATGATTGGGTTTCAGGGACTCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS-3UTR TCA 90 bp | CCTGAAACCCAATCATGTCCACATTGCCCCTCCCCAATCAGGCACCAGAGTGTCAACCACTGGAGAGTGTaGGAGCCTCCCTTGCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: PETQSCPHCPSPIRHQSVNHWRV*EPPLLW Trigger: CCAGAGCAAGGGAGGCTCTCACACTCTCCAGTGGTT...GACACTCTGGTGCCTGATTGGGGAGGGGCAATGTGGACATGATTGGGTTTCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS-3UTR GCA 90 bp | CTGAAACCCAATCATGTCCACATTGCCCCTCCCCAATCAGGCACCAGAGTGTCAGGCCCTGCGCTTCTCTaGAAGACCAGCCTGCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: LKPNHVHIAPPQSGTRVSGPALL*KTSLLQ Trigger: TTGGAGCAGGCTGGTCTTGCAGAGAAGCGCAGGGCC...TGACACTCTGGTGCCTGATTGGGGAGGGGCAATGTGGACATGATTGGGTTTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS-3UTR CCA 90 bp | GTCCCTGAAACCCAATCATGTCCACATTGCCCCTCCCCAATCAGGCACCAGAGTGAGATATCAGAGCTCTaGGGGCTGTCCCTGCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: VPETQSCPHCPSPIRHQSEISEL*GLSLPG Trigger: TCCAGGCAGGGACAGCCCCCAGAGCTCTGATATCTC...ACTCTGGTGCCTGATTGGGGAGGGGCAATGTGGACATGATTGGGTTTCAGGGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS-3UTR CCA 90 bp | CTGGGAGTCCCTGAAACCCAATCATGTCCACATTGCCCCTCCCCAATCAGGCACCCATGTAAGAGTCAGTaGATGGAGGAGGCTCCCATC | + |
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Preference number: 4 (lower is better) Translates to: LGVPETQSCPHCPSPIRHPCKSQ*MEEAPI Trigger: GATGGGAGCCTCCTCCATCCACTGACTCTTACATGG...GTGCCTGATTGGGGAGGGGCAATGTGGACATGATTGGGTTTCAGGGACTCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS-3UTR CCA 90 bp | GAGTCCCTGAAACCCAATCATGTCCACATTGCCCCTCCCCAATCAGGCACCAGAGTAAGAGTCAGTGGATaGAGGAGGCTCCCATCTCAG | + |
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Preference number: 4 (lower is better) Translates to: ESLKPNHVHIAPPQSGTRVRVSG*RRLPSQ Trigger: CTGAGATGGGAGCCTCCTCCATCCACTGACTCTTAC...TCTGGTGCCTGATTGGGGAGGGGCAATGTGGACATGATTGGGTTTCAGGGACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS-3UTR GCA 90 bp | TGGGAGTCCCTGAAACCCAATCATGTCCACATTGCCCCTCCCCAATCAGGCACCCTCACTCGGAAACTCTaGTCATTTTCCTTGGAGACC | + |
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Preference number: 4 (lower is better) Translates to: WESLKPNHVHIAPPQSGTLTRKL*SFSLET Trigger: GGTCTCCAAGGAAAATGAGCAGAGTTTCCGAGTGAG...GGTGCCTGATTGGGGAGGGGCAATGTGGACATGATTGGGTTTCAGGGACTCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS-3UTR CCA 90 bp | TCCCTGAAACCCAATCATGTCCACATTGCCCCTCCCCAATCAGGCACCAGAGTGTCTGCTCATTTTCCTTaGAGACCTGTGTGTTCCGCT | + |
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Preference number: 4 (lower is better) Translates to: SLKPNHVHIAPPQSGTRVSAHFP*RPVCSA Trigger: AGCGGAACACACAGGTCTCCAAGGAAAATGAGCAGA...CACTCTGGTGCCTGATTGGGGAGGGGCAATGTGGACATGATTGGGTTTCAGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS-3UTR TCA 90 bp | TCCCTGAAACCCAATCATGTCCACATTGCCCCTCCCCAATCAGGCACCAGAGTGCAACCAGAACAGCAATaGTCACCATGTAAGAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: SLKPNHVHIAPPQSGTRVQPEQQ*SPCKSQ Trigger: CTGACTCTTACATGGTGATCATTGCTGTTCTGGTTG...CACTCTGGTGCCTGATTGGGGAGGGGCAATGTGGACATGATTGGGTTTCAGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS-3UTR CCA 90 bp | TGGCCAAGAGTTCCACAACTGGTTCCAGGAGGCCTCCTTCTTTTGAAGTATACCGTAAGAGTCAGTGGATaGAGGAGGCTCCCATCTCAG | + |
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Preference number: 4 (lower is better) Translates to: WPRVPQLVPGGLLLLKYTVRVSG*RRLPSQ Trigger: CTGAGATGGGAGCCTCCTCCATCCACTGACTCTTAC...GGTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173115.2 |
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| CDS-3UTR CCA 90 bp | TGGCCAAGAGTTCCACAACTGGTTCCAGGAGGCCTCCTTCTTTTGAAGTATACCCCATGTAAGAGTCAGTaGATGGAGGAGGCTCCCATC | + |
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Preference number: 4 (lower is better) Translates to: WPRVPQLVPGGLLLLKYTPCKSQ*MEEAPI Trigger: GATGGGAGCCTCCTCCATCCACTGACTCTTACATGG...GGTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173115.2 |
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| CDS-3UTR CCA 90 bp | AGAACTATGACTCAATATAATACTCTGGCCAAGAGTTCCACAACTGGTTCCAGGGAGATATCAGAGCTCTaGGGGCTGTCCCTGCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: RTMTQYNTLAKSSTTGSREISEL*GLSLPG Trigger: TCCAGGCAGGGACAGCCCCCAGAGCTCTGATATCTC...CCTGGAACCAGTTGTGGAACTCTTGGCCAGAGTATTATATTGAGTCATAGTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173115.2 |
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| CDS-3UTR TCA 90 bp | TGGCCAAGAGTTCCACAACTGGTTCCAGGAGGCCTCCTTCTTTTGAAGTATACCCAACCAGAACAGCAATaGTCACCATGTAAGAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: WPRVPQLVPGGLLLLKYTQPEQQ*SPCKSQ Trigger: CTGACTCTTACATGGTGATCATTGCTGTTCTGGTTG...GGTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173115.2 |
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| 3UTR CAA 72 bp | AGAGTTCCACAACTGGTTCCAGGAGGCCTCCTTCTTTaGAAGTATACCTCAGTCTGTGCAACTTGTCACATG | + |
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Preference number: 4 (lower is better) Translates to: RVPQLVPGGLLL*KYTSVCATCHM Trigger: CATGTGACAAGTTGCACAGACTGAGGTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173115.2 |
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| CDS-3UTR CAA 90 bp | TGGGAGTCCCTGAAACCCAATCATGTCCACATTGCCCCTCCCCAATCAGGCACCCCAGCCTGCTCCAACTaGCTTCGGGTCTTCAGTGCT | + |
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Preference number: 5 (lower is better) Translates to: WESLKPNHVHIAPPQSGTPACSN*LRVFSA Trigger: AGCACTGAAGACCCGAAGCAAGTTGGAGCAGGCTGG...GGTGCCTGATTGGGGAGGGGCAATGTGGACATGATTGGGTTTCAGGGACTCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS CAA 72 bp | GCCCTGCGCTTCTCTGCAAGACCAGCCTGCTCCAACTaGCTTCGGGTCTTCAGTGCTGCCAGGTCCGCCGCT | + |
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Preference number: 6 (lower is better) Translates to: ALRFSARPACSN*LRVFSAARSAA Trigger: AGCGGCGGACCTGGCAGCACTGAAGACCCGAAGCAAGTTGGAGCAGGCTGGTCTTGCAGAGAAGCGCAGGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS GCA 72 bp | AGCCAACCAACCACTGGAGAGTGTGAGAGCCTCCCTTaGTCTGGTTGTAGTAGCTCAGTGCGGTCCCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: SQPTTGECESLP*SGCSSSVRSPG Trigger: GCCTGGGGACCGCACTGAGCTACTACAACCAGAGCAAGGGAGGCTCTCACACTCTCCAGTGGTTGGTTGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074806.12 |
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| CDS GCA 72 bp | CTAGGAGAGAGATATCAGAGCTCTGGGGGCTGTCCCTaGCTGGATCTTGAGCGTAGTCTCTTACTTTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: LGERYQSSGGCP*LDLERSLLLFH Trigger: GTGGAAAAGTAAGAGACTACGCTCAAGATCCAGGCAGGGACAGCCCCCAGAGCTCTGATATCTCTCTCCTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074806.12 ENSMUST00000173115.2 |
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| CDS CCA 72 bp | GAGAGAGATATCAGAGCTCTGGGGGCTGTCCCTGCCTaGATCTTGAGCGTAGTCTCTTACTTTTCCACCTGT | + |
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Preference number: 6 (lower is better) Translates to: ERDIRALGAVPA*ILSVVSYFSTC Trigger: ACAGGTGGAAAAGTAAGAGACTACGCTCAAGATCCAGGCAGGGACAGCCCCCAGAGCTCTGATATCTCTCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074806.12 ENSMUST00000173115.2 |
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