Pregenerated sensors for H2-Q10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067235Ensembl transcript IDs: ENSMUST00000068291.7, ENSMUST00000174525.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGGAGCTCACAGGATGCAGATGTCTCCCAGTGTTTGGCTGGAGTTaGAAGGCTGACTGTAGAAGGGAGCAAGCAATGCAGGGACAGGGT | + |
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Preference number: 1 (lower is better) Translates to: VELTGCRCLPVFGWS*KADCRREQAMQGQG Trigger: ACCCTGTCCCTGCATTGCTTGCTCCCTTCTACAGTCAGCCTTCCAACTCCAGCCAAACACTGGGAGACATCTGCATCCTGTGAGCTCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| 3UTR CCA 90 bp | CACACTGGTTGTCACTCAGTCCACTCCAGTCAGGTGTCTTCACACTaGAGCGGGAGCATAGTCCCCTCTTTTTCTACCTGTGTTTCTCCT | + |
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Preference number: 1 (lower is better) Translates to: HTGCHSVHSSQVSSH*SGSIVPSFSTCVSP Trigger: AGGAGAAACACAGGTAGAAAAAGAGGGGACTATGCTCCCGCTCCAGTGTGAAGACACCTGACTGGAGTGGACTGAGTGACAACCAGTGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068291.7 |
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| 3UTR TCA 90 bp | CCACAGGAACACAGAGAACATCAGACACTGTTGTCTAAAGAGAACTaGGGGCTCTGGATGTCACAGGAGAGACCTGAACACACTGGTTGT | + |
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Preference number: 1 (lower is better) Translates to: PQEHREHQTLLSKEN*GLWMSQERPEHTGC Trigger: ACAACCAGTGTGTTCAGGTCTCTCCTGTGACATCCAGAGCCCTCAGTTCTCTTTAGACAACAGTGTCTGATGTTCTCTGTGTTCCTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| 3UTR TCA 90 bp | TGGCTGTGTTTCCCATTAATGAGCAGAGCACACTCTAAAGGAGGCTaGGAGAAAACTCAGACCCTGCCCTTTCCTACCTGTGTTTCTCCT | + |
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Preference number: 1 (lower is better) Translates to: WLCFPLMSRAHSKGG*EKTQTLPFPTCVSP Trigger: AGGAGAAACACAGGTAGGAAAGGGCAGGGTCTGAGTTTTCTCTCAGCCTCCTTTAGAGTGTGCTCTGCTCATTAATGGGAAACACAGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| 3UTR CAA 90 bp | AGGGTCCTGGTGTGCAGGGCAGGCTGGGCTACACAGTTCTTCACATaGAGCCCACAGGAACACAGAGAACATCAGACACTGTTGTCTAAA | + |
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Preference number: 2 (lower is better) Translates to: RVLVCRAGWATQFFT*SPQEHREHQTLLSK Trigger: TTTAGACAACAGTGTCTGATGTTCTCTGTGTTCCTGTGGGCTCAATGTGAAGAACTGTGTAGCCCAGCCTGCCCTGCACACCAGGACCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| 3UTR-3UTR TCA 90 bp | AGAGCTCCCAACATCTCCAGCTTCACTGCAATGTCCCCAGGACAATCCTGTCCCTTGTCTAAAGAGAACTaGGGGCTCTGGATGTCACAG | + |
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Preference number: 2 (lower is better) Translates to: RAPNISSFTAMSPGQSCPLSKEN*GLWMSQ Trigger: CTGTGACATCCAGAGCCCTCAGTTCTCTTTAGACAA...GGGACAGGATTGTCCTGGGGACATTGCAGTGAAGCTGGAGATGTTGGGAGCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGATTCTTATTCTCAGTGTGGAAGTGAGGAGCTGCAGCTTAGGGTAGCGTGGGTGTTTGGCTGGAGTTaGAAGGCTGACTGTAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: PDSYSQCGSEELQLRVAWVFGWS*KADCRR Trigger: CCTTCTACAGTCAGCCTTCCAACTCCAGCCAAACAC...CCACGCTACCCTAAGCTGCAGCTCCTCACTTCCACACTGAGAATAAGAATCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| 3UTR-3UTR CCA 90 bp | AGATTTCTCTGGAAGAGTTATTATGGATTCCCAGAGCTCCCAACATCTCCAGCTGTCCCCACACTAACCTaGAGCGGGAGCATAGTCCCC | + |
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Preference number: 2 (lower is better) Translates to: RFLWKSYYGFPELPTSPAVPTLT*SGSIVP Trigger: GGGGACTATGCTCCCGCTCCAGGTTAGTGTGGGGAC...AGCTGGAGATGTTGGGAGCTCTGGGAATCCATAATAACTCTTCCAGAGAAATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| 3UTR-3UTR CCA 90 bp | AGATTTCTCTGGAAGAGTTATTATGGATTCCCAGAGCTCCCAACATCTCCAGCTGTGTGCAGGGCAGGCTaGGCTACACAGTTCTTCACA | + |
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Preference number: 2 (lower is better) Translates to: RFLWKSYYGFPELPTSPAVCRAG*ATQFFT Trigger: TGTGAAGAACTGTGTAGCCCAGCCTGCCCTGCACAC...AGCTGGAGATGTTGGGAGCTCTGGGAATCCATAATAACTCTTCCAGAGAAATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| 3UTR-3UTR GCA 90 bp | ACACAGTTCTTCACATTGAGCCCACAGGAACACAGAGAACATCAGACACTGTTGCAATCATATCCACCTTaGTCTTCCCCAATCTGGCCC | + |
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Preference number: 2 (lower is better) Translates to: TQFFTLSPQEHREHQTLLQSYPP*SSPIWP Trigger: GGGCCAGATTGGGGAAGAGCAAGGTGGATATGATTG...CAACAGTGTCTGATGTTCTCTGTGTTCCTGTGGGCTCAATGTGAAGAACTGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| 3UTR-3UTR TCA 90 bp | AGATTTCTCTGGAAGAGTTATTATGGATTCCCAGAGCTCCCAACATCTCCAGCTCACAGTTCTTCACATTaGGCCCACAGGAACACAGAG | + |
|
Preference number: 2 (lower is better) Translates to: RFLWKSYYGFPELPTSPAHSSSH*AHRNTE Trigger: CTCTGTGTTCCTGTGGGCTCAATGTGAAGAACTGTG...AGCTGGAGATGTTGGGAGCTCTGGGAATCCATAATAACTCTTCCAGAGAAATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| 3UTR CCA 72 bp | CAGTGTGGAAGTGAGGAGCTGCAGCTTAGGGTAGCGTaGAGCTCACAGGATGCAGATGTCTCCCAGTGTTTG | + |
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Preference number: 3 (lower is better) Translates to: QCGSEELQLRVA*SSQDADVSQCL Trigger: CAAACACTGGGAGACATCTGCATCCTGTGAGCTCCACGCTACCCTAAGCTGCAGCTCCTCACTTCCACACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| 3UTR CCA 72 bp | GAGCTCACAGGATGCAGATGTCTCCCAGTGTTTGGCTaGAGTTGGAAGGCTGACTGTAGAAGGGAGCAAGCA | + |
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Preference number: 3 (lower is better) Translates to: ELTGCRCLPVFG*SWKADCRREQA Trigger: TGCTTGCTCCCTTCTACAGTCAGCCTTCCAACTCCAGCCAAACACTGGGAGACATCTGCATCCTGTGAGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| 3UTR-3UTR CAA 90 bp | GGAAGTGAGGAGCTGCAGCTTAGGGTAGCGTGGAGCTCACAGGATGCAGATGTCACACAGTTCTTCACATaGAGCCCACAGGAACACAGA | + |
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Preference number: 3 (lower is better) Translates to: GSEELQLRVAWSSQDADVTQFFT*SPQEHR Trigger: TCTGTGTTCCTGTGGGCTCAATGTGAAGAACTGTGT...GACATCTGCATCCTGTGAGCTCCACGCTACCCTAAGCTGCAGCTCCTCACTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| 3UTR CCA 72 bp | TGTCACTCAGTCCACTCCAGTCAGGTGTCTTCACACTaGAGCGGGAGCATAGTCCCCTCTTTTTCTACCTGT | + |
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Preference number: 3 (lower is better) Translates to: CHSVHSSQVSSH*SGSIVPSFSTC Trigger: ACAGGTAGAAAAAGAGGGGACTATGCTCCCGCTCCAGTGTGAAGACACCTGACTGGAGTGGACTGAGTGACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068291.7 |
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| 3UTR CCA 72 bp | ACAGGATGCAGATGTCTCCCAGTGTTTGGCTGGAGTTaGAAGGCTGACTGTAGAAGGGAGCAAGCAATGCAG | + |
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Preference number: 3 (lower is better) Translates to: TGCRCLPVFGWS*KADCRREQAMQ Trigger: CTGCATTGCTTGCTCCCTTCTACAGTCAGCCTTCCAACTCCAGCCAAACACTGGGAGACATCTGCATCCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| 3UTR TCA 72 bp | ACTAGGAAGTTCCCAGAACTGACAGCAGACCCAGTTTaGGTCAGTAGCAATGTGGGGTGTGGCTGTGTTTCC | + |
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Preference number: 3 (lower is better) Translates to: TRKFPELTADPV*VSSNVGCGCVS Trigger: GGAAACACAGCCACACCCCACATTGCTACTGACTCAAACTGGGTCTGCTGTCAGTTCTGGGAACTTCCTAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| 3UTR GCA 72 bp | ATTCTGGGACTCCCTGAAACCCAATCATATCCACCTTaGTCTTCCCCAATCTGGCCCCAGAGTGTCACCTTT | + |
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Preference number: 3 (lower is better) Translates to: ILGLPETQSYPP*SSPIWPQSVTF Trigger: AAAGGTGACACTCTGGGGCCAGATTGGGGAAGAGCAAGGTGGATATGATTGGGTTTCAGGGAGTCCCAGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| 3UTR CCA 72 bp | CACCCCAACAACCCATCACTCAATCACAGGGGATTCTaGGACTCCCTGAAACCCAATCATATCCACCTTGCT | + |
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Preference number: 3 (lower is better) Translates to: HPNNPSLNHRGF*DSLKPNHIHLA Trigger: AGCAAGGTGGATATGATTGGGTTTCAGGGAGTCCCAGAATCCCCTGTGATTGAGTGATGGGTTGTTGGGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| 3UTR-3UTR CAA 90 bp | CCAGATTCTTATTCTCAGTGTGGAAGTGAGGAGCTGCAGCTTAGGGTAGCGTGGACACAGTTCTTCACATaGAGCCCACAGGAACACAGA | + |
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Preference number: 3 (lower is better) Translates to: PDSYSQCGSEELQLRVAWTQFFT*SPQEHR Trigger: TCTGTGTTCCTGTGGGCTCAATGTGAAGAACTGTGT...CCACGCTACCCTAAGCTGCAGCTCCTCACTTCCACACTGAGAATAAGAATCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| 3UTR TCA 72 bp | CACAGAGAACATCAGACACTGTTGTCTAAAGAGAACTaGGGGCTCTGGATGTCACAGGAGAGACCTGAACAC | + |
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Preference number: 3 (lower is better) Translates to: HREHQTLLSKEN*GLWMSQERPEH Trigger: GTGTTCAGGTCTCTCCTGTGACATCCAGAGCCCTCAGTTCTCTTTAGACAACAGTGTCTGATGTTCTCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| 3UTR CCA 72 bp | CCAAGCCCCCAGAAGATTTCTCTGGAAGAGTTATTATaGATTCCCAGAGCTCCCAACATCTCCAGCTTCACT | + |
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Preference number: 3 (lower is better) Translates to: PSPQKISLEELL*IPRAPNISSFT Trigger: AGTGAAGCTGGAGATGTTGGGAGCTCTGGGAATCCATAATAACTCTTCCAGAGAAATCTTCTGGGGGCTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| 3UTR TCA 72 bp | TCAAAGAAGATCTTGACACTAGGAAGTTCCCAGAACTaGCAGCAGACCCAGTTTGAGTCAGTAGCAATGTGG | + |
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Preference number: 3 (lower is better) Translates to: SKKILTLGSSQN*QQTQFESVAMW Trigger: CCACATTGCTACTGACTCAAACTGGGTCTGCTGTCAGTTCTGGGAACTTCCTAGTGTCAAGATCTTCTTTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| CDS-3UTR CCA 90 bp | CTCCAGTCAGGTGTCTTCACACTGGAGCGGGAGCATAGTCCCCTCTTTTTCTACGAGCCTGCCTGGGTCTaGGTCGGGGCCAGGGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: LQSGVFTLEREHSPLFFYEPAWV*VGARAA Trigger: GGCTGCCCTGGCCCCGACCCAGACCCAGGCAGGCTC...GTAGAAAAAGAGGGGACTATGCTCCCGCTCCAGTGTGAAGACACCTGACTGGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000068291.7 |
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| CDS-3UTR CCA 90 bp | CTCACAGGATGCAGATGTCTCCCAGTGTTTGGCTGGAGTTGGAAGGCTGACTGTGAGCCTGCCTGGGTCTaGGTCGGGGCCAGGGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: LTGCRCLPVFGWSWKADCEPAWV*VGARAA Trigger: GGCTGCCCTGGCCCCGACCCAGACCCAGGCAGGCTC...ACAGTCAGCCTTCCAACTCCAGCCAAACACTGGGAGACATCTGCATCCTGTGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR CCA 90 bp | CAGTGTGGAAGTGAGGAGCTGCAGCTTAGGGTAGCGTGGAGCTCACAGGATGCAGAGTGTGAGCCTGCCTaGGTCTGGGTCGGGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: QCGSEELQLRVAWSSQDAECEPA*VWVGAR Trigger: CCTGGCCCCGACCCAGACCCAGGCAGGCTCACACTC...TGCATCCTGTGAGCTCCACGCTACCCTAAGCTGCAGCTCCTCACTTCCACACTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR CCA 90 bp | AGACCTGAACACACTGGTTGTCACTCAGTCCACTCCAGTCAGGTGTCTTCACACGAGTGTGAGCCTGCCTaGGTCTGGGTCGGGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: RPEHTGCHSVHSSQVSSHECEPA*VWVGAR Trigger: CCTGGCCCCGACCCAGACCCAGGCAGGCTCACACTC...GTGTGAAGACACCTGACTGGAGTGGACTGAGTGACAACCAGTGTGTTCAGGTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR GCA 90 bp | CACAGGAACACAGAGAACATCAGACACTGTTGTCTAAAGAGAACTGAGGGCTCTGCAGCAGGAGCAGCGTaGGCGGCGCCATCGCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: HRNTENIRHCCLKRTEGSAAGAA*AAPSPP Trigger: TGGGGGCGATGGCGCCGCGCACGCTGCTCCTGCTGC...AGAGCCCTCAGTTCTCTTTAGACAACAGTGTCTGATGTTCTCTGTGTTCCTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR GCA 90 bp | CAGTGTGGAAGTGAGGAGCTGCAGCTTAGGGTAGCGTGGAGCTCACAGGATGCATCTTTGGGGGATCTGTaGGCAGCAGCGTCTCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: QCGSEELQLRVAWSSQDASLGDL*AAASPS Trigger: GGAAGGAGACGCTGCTGCGCACAGATCCCCCAAAGA...TGCATCCTGTGAGCTCCACGCTACCCTAAGCTGCAGCTCCTCACTTCCACACTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR TCA 90 bp | CAGTGTGGAAGTGAGGAGCTGCAGCTTAGGGTAGCGTGGAGCTCACAGGATGCACCCAACACCTCAGGGTaGCATCACCTTCAGATCCTG | + |
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Preference number: 4 (lower is better) Translates to: QCGSEELQLRVAWSSQDAPNTSG*HHLQIL Trigger: CAGGATCTGAAGGTGATGTCACCCTGAGGTGTTGGG...TGCATCCTGTGAGCTCCACGCTACCCTAAGCTGCAGCTCCTCACTTCCACACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR GCA 90 bp | AGAGTCATGAACCATCACTATGAAGTCAACACCCCAACAACCCATCACTCAATCGCAGCAGGAGCAGCGTaGGCGGCGCCATCGCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: RVMNHHYEVNTPTTHHSIAAGAA*AAPSPP Trigger: TGGGGGCGATGGCGCCGCGCACGCTGCTCCTGCTGC...GATTGAGTGATGGGTTGTTGGGGTGTTGACTTCATAGTGATGGTTCATGACTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| CDS-3UTR TCA 90 bp | CCAGATTCTTATTCTCAGTGTGGAAGTGAGGAGCTGCAGCTTAGGGTAGCGTGGATACCTCATGGAGTGTaGGCCTGCCTGGGTCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: PDSYSQCGSEELQLRVAWIPHGV*ACLGLG Trigger: ACCCAGACCCAGGCAGGCTCACACTCCATGAGGTAT...CCACGCTACCCTAAGCTGCAGCTCCTCACTTCCACACTGAGAATAAGAATCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR TCA 90 bp | CAGTGTGGAAGTGAGGAGCTGCAGCTTAGGGTAGCGTGGAGCTCACAGGATGCACCTTCAGATCCTGGGTaGTGGGTCACATGTGTCTTT | + |
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Preference number: 4 (lower is better) Translates to: QCGSEELQLRVAWSSQDAPSDPG*WVTCVF Trigger: AAAGACACATGTGACCCATCACCCAGGATCTGAAGG...TGCATCCTGTGAGCTCCACGCTACCCTAAGCTGCAGCTCCTCACTTCCACACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR CCA 90 bp | AGACCTGAACACACTGGTTGTCACTCAGTCCACTCCAGTCAGGTGTCTTCACACTCTGCTCATTGCCCTTaGCTCTCTGTGTCTCCCGCT | + |
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Preference number: 4 (lower is better) Translates to: RPEHTGCHSVHSSQVSSHSAHCP*LSVSPA Trigger: AGCGGGAGACACAGAGAGCCAAGGGCAATGAGCAGA...GTGTGAAGACACCTGACTGGAGTGGACTGAGTGACAACCAGTGTGTTCAGGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR GCA 90 bp | CTCACAGGATGCAGATGTCTCCCAGTGTTTGGCTGGAGTTGGAAGGCTGACTGTGGAAACTCTGCTCATTaGCCTTGGCTCTCTGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: LTGCRCLPVFGWSWKADCGNSAH*PWLSVS Trigger: AGACACAGAGAGCCAAGGGCAATGAGCAGAGTTTCC...ACAGTCAGCCTTCCAACTCCAGCCAAACACTGGGAGACATCTGCATCCTGTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR GCA 90 bp | TGGGCTACACAGTTCTTCACATTGAGCCCACAGGAACACAGAGAACATCAGACATCTTTGGGGGATCTGTaGGCAGCAGCGTCTCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: WATQFFTLSPQEHREHQTSLGDL*AAASPS Trigger: GGAAGGAGACGCTGCTGCGCACAGATCCCCCAAAGA...TGTCTGATGTTCTCTGTGTTCCTGTGGGCTCAATGTGAAGAACTGTGTAGCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR CCA 90 bp | CCAGAGCTCCCAACATCTCCAGCTTCACTGCAATGTCCCCAGGACAATCCTGTCATCACCTTCAGATCCTaGGTGATGGGTCACATGTGT | + |
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Preference number: 4 (lower is better) Translates to: PELPTSPASLQCPQDNPVITFRS*VMGHMC Trigger: ACACATGTGACCCATCACCCAGGATCTGAAGGTGAT...GACAGGATTGTCCTGGGGACATTGCAGTGAAGCTGGAGATGTTGGGAGCTCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| CDS-3UTR TCA 90 bp | TTTCTCTGGAAGAGTTATTATGGATTCCCAGAGCTCCCAACATCTCCAGCTTCAATACCTCATGGAGTGTaGGCCTGCCTGGGTCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: FLWKSYYGFPELPTSPASIPHGV*ACLGLG Trigger: ACCCAGACCCAGGCAGGCTCACACTCCATGAGGTAT...TGAAGCTGGAGATGTTGGGAGCTCTGGGAATCCATAATAACTCTTCCAGAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| CDS-3UTR CCA 90 bp | AGGAGAGACCTGAACACACTGGTTGTCACTCAGTCCACTCCAGTCAGGTGTCTTATCACCTTCAGATCCTaGGTGATGGGTCACATGTGT | + |
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Preference number: 4 (lower is better) Translates to: RRDLNTLVVTQSTPVRCLITFRS*VMGHMC Trigger: ACACATGTGACCCATCACCCAGGATCTGAAGGTGAT...AAGACACCTGACTGGAGTGGACTGAGTGACAACCAGTGTGTTCAGGTCTCTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR TCA 90 bp | TGGGCTACACAGTTCTTCACATTGAGCCCACAGGAACACAGAGAACATCAGACACCTTCAGATCCTGGGTaGTGGGTCACATGTGTCTTT | + |
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Preference number: 4 (lower is better) Translates to: WATQFFTLSPQEHREHQTPSDPG*WVTCVF Trigger: AAAGACACATGTGACCCATCACCCAGGATCTGAAGG...TGTCTGATGTTCTCTGTGTTCCTGTGGGCTCAATGTGAAGAACTGTGTAGCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR GCA 90 bp | ACACAGTTCTTCACATTGAGCCCACAGGAACACAGAGAACATCAGACACTGTTGCTCACATGGAAACTCTaGTCATTGCCCTTGGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: TQFFTLSPQEHREHQTLLLTWKL*SLPLAL Trigger: GAGAGCCAAGGGCAATGAGCAGAGTTTCCATGTGAG...CAACAGTGTCTGATGTTCTCTGTGTTCCTGTGGGCTCAATGTGAAGAACTGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR GCA 90 bp | TTTCTCTGGAAGAGTTATTATGGATTCCCAGAGCTCCCAACATCTCCAGCTTCAGGAAACTCTGCTCATTaGCCTTGGCTCTCTGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: FLWKSYYGFPELPTSPASGNSAH*PWLSVS Trigger: AGACACAGAGAGCCAAGGGCAATGAGCAGAGTTTCC...TGAAGCTGGAGATGTTGGGAGCTCTGGGAATCCATAATAACTCTTCCAGAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174525.8 |
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| CDS-3UTR CAA 90 bp | AGACCTGAACACACTGGTTGTCACTCAGTCCACTCCAGTCAGGTGTCTTCACACCTCTGCTCATTGCCCTaGGCTCTCTGTGTCTCCCGC | + |
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Preference number: 5 (lower is better) Translates to: RPEHTGCHSVHSSQVSSHLCSLP*ALCVSR Trigger: GCGGGAGACACAGAGAGCCAAGGGCAATGAGCAGAG...GTGTGAAGACACCTGACTGGAGTGGACTGAGTGACAACCAGTGTGTTCAGGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR CAA 90 bp | CCAGATTCTTATTCTCAGTGTGGAAGTGAGGAGCTGCAGCTTAGGGTAGCGTGGCTCTGCTCATTGCCCTaGGCTCTCTGTGTCTCCCGC | + |
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Preference number: 5 (lower is better) Translates to: PDSYSQCGSEELQLRVAWLCSLP*ALCVSR Trigger: GCGGGAGACACAGAGAGCCAAGGGCAATGAGCAGAG...CCACGCTACCCTAAGCTGCAGCTCCTCACTTCCACACTGAGAATAAGAATCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR CAA 90 bp | AGGAGAGACCTGAACACACTGGTTGTCACTCAGTCCACTCCAGTCAGGTGTCTTGGGTCACATGTGTCTTaGGGGGATCTGTGCGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: RRDLNTLVVTQSTPVRCLGSHVS*GDLCAA Trigger: TGCTGCGCACAGATCCCCCAAAGACACATGTGACCC...AAGACACCTGACTGGAGTGGACTGAGTGACAACCAGTGTGTTCAGGTCTCTCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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| CDS-3UTR CAA 90 bp | CCAGATTCTTATTCTCAGTGTGGAAGTGAGGAGCTGCAGCTTAGGGTAGCGTGGGGGTCACATGTGTCTTaGGGGGATCTGTGCGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: PDSYSQCGSEELQLRVAWGSHVS*GDLCAA Trigger: TGCTGCGCACAGATCCCCCAAAGACACATGTGACCC...CCACGCTACCCTAAGCTGCAGCTCCTCACTTCCACACTGAGAATAAGAATCTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000068291.7 ENSMUST00000174525.8 |
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