Pregenerated sensors for H2-Q1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079507Ensembl transcript IDs: ENSMUST00000073208.6, ENSMUST00000105041.10
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CACATGGCTGCTACTGGGGTTGGTGTGGCAGAGAACATGAGACACCATTTTCTAGTCACAGGAGAGACCTaGACACACTGGCTATCACTC | + |
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Preference number: 2 (lower is better) Translates to: HMAATGVGVAENMRHHFLVTGET*THWLSL Trigger: GAGTGATAGCCAGTGTGTTCAGGTCTCTCCTGTGAC...TAGAAAATGGTGTCTCATGTTCTCTGCCACACCAACCCCAGTAGCAGCCATGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR-3UTR TCA 90 bp | CTGGCCAAGAGTTCCACAACTGGTTCCAGGAGGCCTCCTTCTTTTGAAGTATACGTCACAGGAGAGACCTaGACACACTGGCTATCACTC | + |
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Preference number: 2 (lower is better) Translates to: LAKSSTTGSRRPPSFEVYVTGET*THWLSL Trigger: GAGTGATAGCCAGTGTGTTCAGGTCTCTCCTGTGAC...GTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR CAA 90 bp | CTCTGGCCAAGAGTTCCACAACTGGTTCCAGGAGGCCTCCTTCTTTaGAAGTATACCTCAGTCTGTGCAACTTGTCACATGGCTGCTACT | + |
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Preference number: 2 (lower is better) Translates to: LWPRVPQLVPGGLLL*KYTSVCATCHMAAT Trigger: AGTAGCAGCCATGTGACAAGTTGCACAGACTGAGGTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR-3UTR CCA 90 bp | AATACTCTGGCCAAGAGTTCCACAACTGGTTCCAGGAGGCCTCCTTCTTTTGAAGTGCAACTTGTCACATaGCTGCTACTGGGGTTGGTG | + |
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Preference number: 2 (lower is better) Translates to: NTLAKSSTTGSRRPPSFEVQLVT*LLLGLV Trigger: CACCAACCCCAGTAGCAGCCATGTGACAAGTTGCAC...TTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCAGAGTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR-3UTR CCA 90 bp | GTGTCCAGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCACAAGAGTTCCACAACTaGTTCCAGGAGGCCTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: VSSEAITNTIIIIWHRKAQEFHN*FQEASF Trigger: GAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTG...TGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGGACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR-3UTR CCA 90 bp | TTTTTATTTAAGACTTTCTTTACCACATGCCAAAGCCCACCTCCGATAACACACGTGCAACTTGTCACATaGCTGCTACTGGGGTTGGTG | + |
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Preference number: 2 (lower is better) Translates to: FLFKTFFTTCQSPPPITHVQLVT*LLLGLV Trigger: CACCAACCCCAGTAGCAGCCATGTGACAAGTTGCAC...GTGTGTTATCGGAGGTGGGCTTTGGCATGTGGTAAAGAAAGTCTTAAATAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR-3UTR CCA 90 bp | CCAGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCACAAACAAGAGTTCCACAACTaGTTCCAGGAGGCCTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: PVKQSQIPSLSFGTGKHKQEFHN*FQEASF Trigger: GAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTG...TTTGTGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR-3UTR TCA 90 bp | AAGAATATAAGTTGTGGGGCAGTCATCCAAGGCTACTGGCATATGTTCAAGACAATGTCTAAAGACTCTTaGTGTCACAGGAGAGACCTG | + |
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Preference number: 2 (lower is better) Translates to: KNISCGAVIQGYWHMFKTMSKDS*CHRRDL Trigger: CAGGTCTCTCCTGTGACATCAAGAGTCTTTAGACAT...TGTCTTGAACATATGCCAGTAGCCTTGGATGACTGCCCCACAACTTATATTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR-3UTR TCA 90 bp | GTGTCCAGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCAATGTCTAAAGACTCTTaGTGTCACAGGAGAGACCTG | + |
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Preference number: 2 (lower is better) Translates to: VSSEAITNTIIIIWHRKAMSKDS*CHRRDL Trigger: CAGGTCTCTCCTGTGACATCAAGAGTCTTTAGACAT...TGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGGACAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR-3UTR CCA 90 bp | GTGTCCAGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCAGTCATCCAAGGCTACTaGCATATGTTCAAGACATGT | + |
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Preference number: 2 (lower is better) Translates to: VSSEAITNTIIIIWHRKAVIQGY*HMFKTC Trigger: ACATGTCTTGAACATATGCCAGTAGCCTTGGATGAC...TGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGGACAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR-3UTR CCA 90 bp | CCAGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCACAAAGTCATCCAAGGCTACTaGCATATGTTCAAGACATGT | + |
|
Preference number: 2 (lower is better) Translates to: PVKQSQIPSLSFGTGKHKVIQGY*HMFKTC Trigger: ACATGTCTTGAACATATGCCAGTAGCCTTGGATGAC...TTTGTGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR-3UTR TCA 90 bp | CCAGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCACAAAGAACAGGTGACATCATaGAGAGTAGAAATGATTGAA | + |
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Preference number: 2 (lower is better) Translates to: PVKQSQIPSLSFGTGKHKEQVTS*RVEMIE Trigger: TTCAATCATTTCTACTCTTCATGATGTCACCTGTTC...TTTGTGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR-3UTR CCA 90 bp | TCATTATCATTTGGCACAGGAAAGCACAAAAATCAGGCAAACATTACAACTCTGCTCAATATAATACTCTaGCCAAGAGTTCCACAACTG | + |
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Preference number: 2 (lower is better) Translates to: SLSFGTGKHKNQANITTLLNIIL*PRVPQL Trigger: CAGTTGTGGAACTCTTGGCCAGAGTATTATATTGAG...CAGAGTTGTAATGTTTGCCTGATTTTTGTGCTTTCCTGTGCCAAATGATAATGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| 3UTR CCA 72 bp | TCCAGTGAAGCAATCACAAATACCATCATTATCATTTaGCACAGGAAAGCACAAAAATCAGGCAAACATTAC | + |
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Preference number: 3 (lower is better) Translates to: SSEAITNTIIII*HRKAQKSGKHY Trigger: GTAATGTTTGCCTGATTTTTGTGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR CCA 90 bp | CACATGGCTGCTACTGGGGTTGGTGTGGCAGAGAACATGAGACACCATTTTCTAGGCGCTGTCCCTGCTTaGAGCCAGAGCACAGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: HMAATGVGVAENMRHHFLGAVPA*SQSTVL Trigger: GAGGACTGTGCTCTGGCTCCAAGCAGGGACAGCGCC...TAGAAAATGGTGTCTCATGTTCTCTGCCACACCAACCCCAGTAGCAGCCATGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073208.6 |
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| CDS-3UTR TCA 90 bp | CACATGGCTGCTACTGGGGTTGGTGTGGCAGAGAACATGAGACACCATTTTCTACCCAGCACCTCAGGGTaGCATCACCTTGAGATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: HMAATGVGVAENMRHHFLPSTSG*HHLEIW Trigger: CCAGATCTCAAGGTGATGTCACCCTGAGGTGCTGGG...TAGAAAATGGTGTCTCATGTTCTCTGCCACACCAACCCCAGTAGCAGCCATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR GCA 90 bp | CACATGGCTGCTACTGGGGTTGGTGTGGCAGAGAACATGAGACACCATTTTCTATCTGGAAGGTGTGAATaGCGCCCTTGCTCTGGTTGT | + |
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Preference number: 4 (lower is better) Translates to: HMAATGVGVAENMRHHFLSGRCE*RPCSGC Trigger: ACAACCAGAGCAAGGGCGGCATTCACACCTTCCAGA...TAGAAAATGGTGTCTCATGTTCTCTGCCACACCAACCCCAGTAGCAGCCATGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR GCA 90 bp | AATACTCTGGCCAAGAGTTCCACAACTGGTTCCAGGAGGCCTCCTTCTTTTGAAAGCTGCCACATCTGCTaGTGTCCAGGTTTCCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: NTLAKSSTTGSRRPPSFESCHIC*CPGFQV Trigger: GACCTGGAAACCTGGACAGCAGCAGATGTGGCAGCT...TTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCAGAGTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR GCA 90 bp | AATACTCTGGCCAAGAGTTCCACAACTGGTTCCAGGAGGCCTCCTTCTTTTGAACTGAGCTGCCACATCTaGTGCTGTCCAGGTTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: NTLAKSSTTGSRRPPSFELSCHI*CCPGFQ Trigger: CTGGAAACCTGGACAGCAGCAGATGTGGCAGCTCAG...TTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCAGAGTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR TCA 90 bp | AAGAATATAAGTTGTGGGGCAGTCATCCAAGGCTACTGGCATATGTTCAAGACACCCAGCACCTCAGGGTaGCATCACCTTGAGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: KNISCGAVIQGYWHMFKTPSTSG*HHLEIW Trigger: CCAGATCTCAAGGTGATGTCACCCTGAGGTGCTGGG...TGTCTTGAACATATGCCAGTAGCCTTGGATGACTGCCCCACAACTTATATTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR CCA 90 bp | CTGGCCAAGAGTTCCACAACTGGTTCCAGGAGGCCTCCTTCTTTTGAAGTATACCATCACCTTGAGATCTaGGGTGATGAGTCACATGTG | + |
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Preference number: 4 (lower is better) Translates to: LAKSSTTGSRRPPSFEVYHHLEI*GDESHV Trigger: CACATGTGACTCATCACCCCAGATCTCAAGGTGATG...GTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR GCA 90 bp | AAGAATATAAGTTGTGGGGCAGTCATCCAAGGCTACTGGCATATGTTCAAGACAAGCTGCCACATCTGCTaGTGTCCAGGTTTCCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: KNISCGAVIQGYWHMFKTSCHIC*CPGFQV Trigger: GACCTGGAAACCTGGACAGCAGCAGATGTGGCAGCT...TGTCTTGAACATATGCCAGTAGCCTTGGATGACTGCCCCACAACTTATATTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR GCA 90 bp | AAGAATATAAGTTGTGGGGCAGTCATCCAAGGCTACTGGCATATGTTCAAGACATCGGGTTTCCTGAGCTaGCACATCTGCTGCTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: KNISCGAVIQGYWHMFKTSGFLS*HICCCP Trigger: TGGACAGCAGCAGATGTGGCAGCTCAGGAAACCCGA...TGTCTTGAACATATGCCAGTAGCCTTGGATGACTGCCCCACAACTTATATTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR CCA 90 bp | TGGGGCAGTCATCCAAGGCTACTGGCATATGTTCAAGACATGTTAATAAATCTTAGTCACATGTGCCTTTaGGGGGTCTGTGCGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: WGSHPRLLAYVQDMLINLSHMCL*GVCAQQ Trigger: CTGCTGCGCACAGACCCCCCAAAGGCACATGTGACT...AAGATTTATTAACATGTCTTGAACATATGCCAGTAGCCTTGGATGACTGCCCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR CCA 90 bp | GTGTCCAGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCAAGTCACATGTGCCTTTaGGGGGTCTGTGCGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: VSSEAITNTIIIIWHRKASHMCL*GVCAQQ Trigger: CTGCTGCGCACAGACCCCCCAAAGGCACATGTGACT...TGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGGACAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR TCA 90 bp | CCAGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCACAAATTGAAGGCGCCCATCTaGCCCCAGATCACAGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: PVKQSQIPSLSFGTGKHKLKAPI*PQITAR Trigger: TCTGGCTGTGATCTGGGGTCAGATGGGCGCCTTCAA...TTTGTGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR TCA 90 bp | TTTTTATTTAAGACTTTCTTTACCACATGCCAAAGCCCACCTCCGATAACACACTTGAAGGCGCCCATCTaGCCCCAGATCACAGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: FLFKTFFTTCQSPPPITHLKAPI*PQITAR Trigger: TCTGGCTGTGATCTGGGGTCAGATGGGCGCCTTCAA...GTGTGTTATCGGAGGTGGGCTTTGGCATGTGGTAAAGAAAGTCTTAAATAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR CCA 90 bp | GTGTCCAGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCAGTGCTCAGGCTCTCTTaGAATCTCTTCTCACTGCCC | + |
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Preference number: 4 (lower is better) Translates to: VSSEAITNTIIIIWHRKAVLRLS*NLFSLP Trigger: GGGCAGTGAGAAGAGATTCCAAGAGAGCCTGAGCAC...TGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGGACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR GCA 90 bp | TTTTTATTTAAGACTTTCTTTACCACATGCCAAAGCCCACCTCCGATAACACACTCTGGAAGGTGTGAATaGCGCCCTTGCTCTGGTTGT | + |
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Preference number: 4 (lower is better) Translates to: FLFKTFFTTCQSPPPITHSGRCE*RPCSGC Trigger: ACAACCAGAGCAAGGGCGGCATTCACACCTTCCAGA...GTGTGTTATCGGAGGTGGGCTTTGGCATGTGGTAAAGAAAGTCTTAAATAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR GCA 90 bp | AGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCACAAAAATCGGGTTTCCTGAGCTaGCACATCTGCTGCTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SEAITNTIIIIWHRKAQKSGFLS*HICCCP Trigger: TGGACAGCAGCAGATGTGGCAGCTCAGGAAACCCGA...TTTTTGTGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR CCA 90 bp | TCATTATCATTTGGCACAGGAAAGCACAAAAATCAGGCAAACATTACAACTCTGGTGCTCAGGCTCTCTTaGAATCTCTTCTCACTGCCC | + |
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Preference number: 4 (lower is better) Translates to: SLSFGTGKHKNQANITTLVLRLS*NLFSLP Trigger: GGGCAGTGAGAAGAGATTCCAAGAGAGCCTGAGCAC...CAGAGTTGTAATGTTTGCCTGATTTTTGTGCTTTCCTGTGCCAAATGATAATGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR CAA 90 bp | CACATGGCTGCTACTGGGGTTGGTGTGGCAGAGAACATGAGACACCATTTTCTAGAGCCCGCTCCGGTTTaGGTCAGGGTCAGGGCGGCT | + |
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Preference number: 5 (lower is better) Translates to: HMAATGVGVAENMRHHFLEPAPV*VRVRAA Trigger: AGCCGCCCTGACCCTGACCAAAACCGGAGCGGGCTC...TAGAAAATGGTGTCTCATGTTCTCTGCCACACCAACCCCAGTAGCAGCCATGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS GCA 90 bp | CTTTACAATCTAGGAGAGAGATATCAGAGCTCTGGGCGCTGTCCCTaGTTGGAGCCAGAGCACAGTCCTCTCCTTGTCCACCTTTGTTTC | + |
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Preference number: 5 (lower is better) Translates to: LYNLGERYQSSGRCP*LEPEHSPLLVHLCF Trigger: GAAACAAAGGTGGACAAGGAGAGGACTGTGCTCTGGCTCCAAGCAGGGACAGCGCCCAGAGCTCTGATATCTCTCTCCTAGATTGTAAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073208.6 |
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| CDS-3UTR CAA 90 bp | TGGGGCAGTCATCCAAGGCTACTGGCATATGTTCAAGACATGTTAATAAATCTTGAGCCCGCTCCGGTTTaGGTCAGGGTCAGGGCGGCT | + |
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Preference number: 5 (lower is better) Translates to: WGSHPRLLAYVQDMLINLEPAPV*VRVRAA Trigger: AGCCGCCCTGACCCTGACCAAAACCGGAGCGGGCTC...AAGATTTATTAACATGTCTTGAACATATGCCAGTAGCCTTGGATGACTGCCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR CAA 90 bp | CCAGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCACAAACTCTTCTCACTGCCCTaGACTCTCCGTGTGTTCCGT | + |
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Preference number: 5 (lower is better) Translates to: PVKQSQIPSLSFGTGKHKLFSLP*TLRVFR Trigger: ACGGAACACACGGAGAGTCAAGGGCAGTGAGAAGAG...TTTGTGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR CAA 90 bp | CCAGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCACAAAGGTGCTCAGGCTCTCTaGGAATCTCTTCTCACTGCC | + |
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Preference number: 5 (lower is better) Translates to: PVKQSQIPSLSFGTGKHKGAQAL*ESLLTA Trigger: GGCAGTGAGAAGAGATTCCAAGAGAGCCTGAGCACC...TTTGTGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR CAA 90 bp | TCATTATCATTTGGCACAGGAAAGCACAAAAATCAGGCAAACATTACAACTCTGCTCTTCTCACTGCCCTaGACTCTCCGTGTGTTCCGT | + |
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Preference number: 5 (lower is better) Translates to: SLSFGTGKHKNQANITTLLFSLP*TLRVFR Trigger: ACGGAACACACGGAGAGTCAAGGGCAGTGAGAAGAG...CAGAGTTGTAATGTTTGCCTGATTTTTGTGCTTTCCTGTGCCAAATGATAATGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS-3UTR CAA 90 bp | GTGTCCAGTGAAGCAATCACAAATACCATCATTATCATTTGGCACAGGAAAGCAAGCACAGTCCTCTCCTaGTCCACCTTTGTTTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: VSSEAITNTIIIIWHRKASTVLS*STFVSP Trigger: AGGAGAAACAAAGGTGGACAAGGAGAGGACTGTGCT...TGCTTTCCTGTGCCAAATGATAATGATGGTATTTGTGATTGCTTCACTGGACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073208.6 |
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| CDS-3UTR CAA 90 bp | TTTTTATTTAAGACTTTCTTTACCACATGCCAAAGCCCACCTCCGATAACACACTCTCCTTGTCCACCTTaGTTTCTCCTCCTCTTCATC | + |
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Preference number: 5 (lower is better) Translates to: FLFKTFFTTCQSPPPITHSPCPP*FLLLFI Trigger: GATGAAGAGGAGGAGAAACAAAGGTGGACAAGGAGA...GTGTGTTATCGGAGGTGGGCTTTGGCATGTGGTAAAGAAAGTCTTAAATAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073208.6 |
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| CDS TCA 72 bp | CCGGGACACCGAGGTCTCGAAATACCGCAGCGAGTGTaGGCCCGCTCCGGTTTTGGTCAGGGTCAGGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: PGHRGLEIPQRV*ARSGFGQGQGG Trigger: GCCGCCCTGACCCTGACCAAAACCGGAGCGGGCTCACACTCGCTGCGGTATTTCGAGACCTCGGTGTCCCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS TCA 72 bp | GCAGCACCAGCCTGCTCCCACTTGCGTCGGGTTTCCTaGGCTGCCACATCTGCTGCTGTCCAGGTTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: AAPACSHLRRVS*AATSAAVQVSR Trigger: CCTGGAAACCTGGACAGCAGCAGATGTGGCAGCTCAGGAAACCCGACGCAAGTGGGAGCAGGCTGGTGCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS GCA 72 bp | ACCAGCCTGCTCCCACTTGCGTCGGGTTTCCTGAGCTaGCACATCTGCTGCTGTCCAGGTTTCCAGGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: TSLLPLASGFLS*HICCCPGFQVF Trigger: GAAGACCTGGAAACCTGGACAGCAGCAGATGTGGCAGCTCAGGAAACCCGACGCAAGTGGGAGCAGGCTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS GCA 72 bp | CTAGGAGAGAGATATCAGAGCTCTGGGCGCTGTCCCTaGTTGGAGCCAGAGCACAGTCCTCTCCTTGTCCAC | + |
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Preference number: 6 (lower is better) Translates to: LGERYQSSGRCP*LEPEHSPLLVH Trigger: GTGGACAAGGAGAGGACTGTGCTCTGGCTCCAAGCAGGGACAGCGCCCAGAGCTCTGATATCTCTCTCCTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073208.6 |
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| CDS CAA 72 bp | GGAGAGAGATATCAGAGCTCTGGGCGCTGTCCCTGCTaGGAGCCAGAGCACAGTCCTCTCCTTGTCCACCTT | + |
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Preference number: 6 (lower is better) Translates to: GERYQSSGRCPC*EPEHSPLLVHL Trigger: AAGGTGGACAAGGAGAGGACTGTGCTCTGGCTCCAAGCAGGGACAGCGCCCAGAGCTCTGATATCTCTCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073208.6 |
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| CDS CCA 72 bp | GAGAGAGATATCAGAGCTCTGGGCGCTGTCCCTGCTTaGAGCCAGAGCACAGTCCTCTCCTTGTCCACCTTT | + |
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Preference number: 6 (lower is better) Translates to: ERDIRALGAVPA*SQSTVLSLSTF Trigger: AAAGGTGGACAAGGAGAGGACTGTGCTCTGGCTCCAAGCAGGGACAGCGCCCAGAGCTCTGATATCTCTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073208.6 |
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| CDS CCA 72 bp | CATGCTTTACAATCTAGGAGAGAGATATCAGAGCTCTaGGCGCTGTCCCTGCTTGGAGCCAGAGCACAGTCC | + |
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Preference number: 6 (lower is better) Translates to: HALQSRREISEL*ALSLLGARAQS Trigger: GGACTGTGCTCTGGCTCCAAGCAGGGACAGCGCCCAGAGCTCTGATATCTCTCTCCTAGATTGTAAAGCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073208.6 |
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| CDS CAA 90 bp | TACAATCTAGGAGAGAGATATCAGAGCTCTGGGCGCTGTCCCTGCTaGGAGCCAGAGCACAGTCCTCTCCTTGTCCACCTTTGTTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: YNLGERYQSSGRCPC*EPEHSPLLVHLCFS Trigger: GGAGAAACAAAGGTGGACAAGGAGAGGACTGTGCTCTGGCTCCAAGCAGGGACAGCGCCCAGAGCTCTGATATCTCTCTCCTAGATTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073208.6 |
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| CDS CCA 72 bp | CAGAACAGCTATGATTACCATGTTGGAAACAGTGTATaGAGGAGGCTCCCATCTCAGGGTGAGGGGCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: QNSYDYHVGNSV*RRLPSQGEGLR Trigger: CCTGAGCCCCTCACCCTGAGATGGGAGCCTCCTCCATACACTGTTTCCAACATGGTAATCATAGCTGTTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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| CDS CAA 90 bp | CTGTCCCTGCTTGGAGCCAGAGCACAGTCCTCTCCTTGTCCACCTTaGTTTCTCCTCCTCTTCATCACAAAAGACACCATAACTCCAATG | + |
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Preference number: 6 (lower is better) Translates to: LSLLGARAQSSPCPP*FLLLFITKDTITPM Trigger: CATTGGAGTTATGGTGTCTTTTGTGATGAAGAGGAGGAGAAACAAAGGTGGACAAGGAGAGGACTGTGCTCTGGCTCCAAGCAGGGACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073208.6 |
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| CDS CAA 72 bp | GCTCCAAGGACAACCAGAACAGCTATGATTACCATGTaGGAAACAGTGTATGGAGGAGGCTCCCATCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: APRTTRTAMITM*ETVYGGGSHLR Trigger: CCTGAGATGGGAGCCTCCTCCATACACTGTTTCCAACATGGTAATCATAGCTGTTCTGGTTGTCCTTGGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073208.6 ENSMUST00000105041.10 |
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