RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for H2-OA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024334

Ensembl transcript IDs: ENSMUST00000025192.8

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 72 bp CCCACAATGTTCTCCTGGGATTTGGTGAACAGAGGTTaGTGCCACTCGAGGTCAACACTGTCACAGGCTGCC +
Preference number: 3 (lower is better)
Translates to: PTMFSWDLVNRG*CHSRSTLSQAA
Trigger: GGCAGCCTGTGACAGTGTTGACCTCGAGTGGCATCAACCTCTGTTCACCAAATCCCAGGAGAACATTGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
3UTR TCA 72 bp AGGAGACTGCGCCCACAATGTTCTCCTGGGATTTGGTaGACAGAGGTTGATGCCACTCGAGGTCAACACTGT +
Preference number: 3 (lower is better)
Translates to: RRLRPQCSPGIW*TEVDATRGQHC
Trigger: ACAGTGTTGACCTCGAGTGGCATCAACCTCTGTTCACCAAATCCCAGGAGAACATTGTGGGCGCAGTCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS-3UTR TCA 90 bp ACAGAGGTTGATGCCACTCGAGGTCAACACTGTCACAGGCTGCCGCTGAGCACGCCATGTGGTCGGCCTTaGTGGCCCTTACTCCTCGGG +
Preference number: 4 (lower is better)
Translates to: TEVDATRGQHCHRLPLSTPCGRP*WPLLLG
Trigger: CCCGAGGAGTAAGGGCCATCAAGGCCGACCACATGG...CGTGCTCAGCGGCAGCCTGTGACAGTGTTGACCTCGAGTGGCATCAACCTCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS-3UTR CCA 90 bp GTACCAGGGCAGGAGACTGCGCCCACAATGTTCTCCTGGGATTTGGTGAACAGAGGTGGGGTAAGCACTTaGGGCTCCCAGTGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: VPGQETAPTMFSWDLVNRGGVST*GSQCWR
Trigger: CCTCCAGCACTGGGAGCCCCAAGTGCTTACCCCACC...TCTGTTCACCAAATCCCAGGAGAACATTGTGGGCGCAGTCTCCTGCCCTGGTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS-3UTR TCA 90 bp GACTGCGCCCACAATGTTCTCCTGGGATTTGGTGAACAGAGGTTGATGCCACTCCATCCACGATGCAGATaGGGACGTTGGGCTTTCCGA +
Preference number: 4 (lower is better)
Translates to: DCAHNVLLGFGEQRLMPLHPRCR*GRWAFR
Trigger: TCGGAAAGCCCAACGTCCTCATCTGCATCGTGGATG...GAGTGGCATCAACCTCTGTTCACCAAATCCCAGGAGAACATTGTGGGCGCAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
3UTR CAA 72 bp GCCCACAATGTTCTCCTGGGATTTGGTGAACAGAGGTaGATGCCACTCGAGGTCAACACTGTCACAGGCTGC +
Preference number: 4 (lower is better)
Translates to: AHNVLLGFGEQR*MPLEVNTVTGC
Trigger: GCAGCCTGTGACAGTGTTGACCTCGAGTGGCATCAACCTCTGTTCACCAAATCCCAGGAGAACATTGTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS-3UTR TCA 90 bp CACAATGTTCTCCTGGGATTTGGTGAACAGAGGTTGATGCCACTCGAGGTCAACACCAAGATGTCCAGATaGGCTTTGATCATGGAAATG +
Preference number: 4 (lower is better)
Translates to: HNVLLGFGEQRLMPLEVNTKMSR*ALIMEM
Trigger: CATTTCCATGATCAAAGCTCATCTGGACATCTTGGT...GTTGACCTCGAGTGGCATCAACCTCTGTTCACCAAATCCCAGGAGAACATTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS CCA 90 bp GAGAACCAGGCCCAGGCCACAGATCAGGGTCTCTATGGTGTCCGGTaGTGGGGTAAGCACTTGGGGCTCCCAGTGCTGGAGGAGCGGTGT +
Preference number: 5 (lower is better)
Translates to: ENQAQATDQGLYGVR*WGKHLGLPVLEERC
Trigger: ACACCGCTCCTCCAGCACTGGGAGCCCCAAGTGCTTACCCCACCACCGGACACCATAGAGACCCTGATCTGTGGCCTGGGCCTGGTTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS CCA 90 bp CCACAGATCAGGGTCTCTATGGTGTCCGGTGGTGGGGTAAGCACTTaGGGCTCCCAGTGCTGGAGGAGCGGTGTATCCAGGCCCCAGTGT +
Preference number: 5 (lower is better)
Translates to: PQIRVSMVSGGGVST*GSQCWRSGVSRPQC
Trigger: ACACTGGGGCCTGGATACACCGCTCCTCCAGCACTGGGAGCCCCAAGTGCTTACCCCACCACCGGACACCATAGAGACCCTGATCTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS CCA 90 bp AACCAGGCCCAGGCCACAGATCAGGGTCTCTATGGTGTCCGGTGGTaGGGTAAGCACTTGGGGCTCCCAGTGCTGGAGGAGCGGTGTATC +
Preference number: 5 (lower is better)
Translates to: NQAQATDQGLYGVRW*GKHLGLPVLEERCI
Trigger: GATACACCGCTCCTCCAGCACTGGGAGCCCCAAGTGCTTACCCCACCACCGGACACCATAGAGACCCTGATCTGTGGCCTGGGCCTGGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS-3UTR CAA 90 bp GAGGTTGATGCCACTCGAGGTCAACACTGTCACAGGCTGCCGCTGAGCACGCAGGTGATGGGCTGGCTGTaGCGCAGCCAGGTGACATTG +
Preference number: 5 (lower is better)
Translates to: EVDATRGQHCHRLPLSTQVMGWL*RSQVTL
Trigger: CAATGTCACCTGGCTGCGCAACAGCCAGCCCATCAC...CTGCGTGCTCAGCGGCAGCCTGTGACAGTGTTGACCTCGAGTGGCATCAACCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS TCA 90 bp GCTCCACACGAGTCTTGGGGAGAACGGTCACTCTGGGAGGCACGCTaGCAGCTCTGGTTCGGTTGGAGCGTTCCACCAAGATGTCCAGAT +
Preference number: 5 (lower is better)
Translates to: APHESWGERSLWEAR*QLWFGWSVPPRCPD
Trigger: ATCTGGACATCTTGGTGGAACGCTCCAACCGAACCAGAGCTGTCAGCGTGCCTCCCAGAGTGACCGTTCTCCCCAAGACTCGTGTGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS-3UTR CAA 90 bp AGGTCAACACTGTCACAGGCTGCCGCTGAGCACGCAGAAGCTTCCAGAAGTCCGAGCTCCACACGAGTCTaGGGGAGAACGGTCACTCTG +
Preference number: 5 (lower is better)
Translates to: RSTLSQAAAEHAEASRSPSSTRV*GRTVTL
Trigger: CAGAGTGACCGTTCTCCCCAAGACTCGTGTGGAGCT...CGGACTTCTGGAAGCTTCTGCGTGCTCAGCGGCAGCCTGTGACAGTGTTGACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS-3UTR CAA 90 bp TGCGCCCACAATGTTCTCCTGGGATTTGGTGAACAGAGGTTGATGCCACTCGAGTGGTGGGGTAAGCACTaGGGGCTCCCAGTGCTGGAG +
Preference number: 5 (lower is better)
Translates to: CAHNVLLGFGEQRLMPLEWWGKH*GLPVLE
Trigger: CTCCAGCACTGGGAGCCCCAAGTGCTTACCCCACCA...CTCGAGTGGCATCAACCTCTGTTCACCAAATCCCAGGAGAACATTGTGGGCGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS TCA 90 bp AAGATTGGTAGAAGGCCGGTCCATAGGAGCCCATGTGGTCGGCCTTaGTGGCCCTTACTCCTCGGGGACTCAGGAAGCTCATTGCGGTTA +
Preference number: 5 (lower is better)
Translates to: KIGRRPVHRSPCGRP*WPLLLGDSGSSLRL
Trigger: TAACCGCAATGAGCTTCCTGAGTCCCCGAGGAGTAAGGGCCATCAAGGCCGACCACATGGGCTCCTATGGACCGGCCTTCTACCAATCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS-3UTR CAA 90 bp GACTGCGCCCACAATGTTCTCCTGGGATTTGGTGAACAGAGGTTGATGCCACTCCGCAGCCAGGTGACATaGATCACAGGCGGGAAGATA +
Preference number: 5 (lower is better)
Translates to: DCAHNVLLGFGEQRLMPLRSQVT*ITGGKI
Trigger: TATCTTCCCGCCTGTGATCAATGTCACCTGGCTGCG...GAGTGGCATCAACCTCTGTTCACCAAATCCCAGGAGAACATTGTGGGCGCAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS TCA 90 bp CTCTGGTTCGGTTGGAGCGTTCCACCAAGATGTCCAGATGAGCTTTaGTCATGGAAATGCTCATCAGCCCACTCTGAAAGTCCGAGTGGG +
Preference number: 5 (lower is better)
Translates to: LWFGWSVPPRCPDEL*SWKCSSAHSESPSG
Trigger: CCCACTCGGACTTTCAGAGTGGGCTGATGAGCATTTCCATGATCAAAGCTCATCTGGACATCTTGGTGGAACGCTCCAACCGAACCAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS TCA 90 bp TCTTCAGATCCACGGAGAAAATTTGTTCCCCGTCAAATTCGTGTGTaGACTGTCCAGAAGCGTCGTAAGATTGGTAGAAGGCCGGTCCAT +
Preference number: 5 (lower is better)
Translates to: SSDPRRKFVPRQIRV*TVQKRRKIGRRPVH
Trigger: ATGGACCGGCCTTCTACCAATCTTACGACGCTTCTGGACAGTTCACACACGAATTTGACGGGGAACAAATTTTCTCCGTGGATCTGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS CCA 72 bp GCCCAGGCCACAGATCAGGGTCTCTATGGTGTCCGGTaGTGGGGTAAGCACTTGGGGCTCCCAGTGCTGGAG +
Preference number: 6 (lower is better)
Translates to: AQATDQGLYGVR*WGKHLGLPVLE
Trigger: CTCCAGCACTGGGAGCCCCAAGTGCTTACCCCACCACCGGACACCATAGAGACCCTGATCTGTGGCCTGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS CCA 72 bp CAGGCCACAGATCAGGGTCTCTATGGTGTCCGGTGGTaGGGTAAGCACTTGGGGCTCCCAGTGCTGGAGGAG +
Preference number: 6 (lower is better)
Translates to: QATDQGLYGVRW*GKHLGLPVLEE
Trigger: CTCCTCCAGCACTGGGAGCCCCAAGTGCTTACCCCACCACCGGACACCATAGAGACCCTGATCTGTGGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS CAA 72 bp CAGGGTCTCTATGGTGTCCGGTGGTGGGGTAAGCACTaGGGGCTCCCAGTGCTGGAGGAGCGGTGTATCCAG +
Preference number: 6 (lower is better)
Translates to: QGLYGVRWWGKH*GLPVLEERCIQ
Trigger: CTGGATACACCGCTCCTCCAGCACTGGGAGCCCCAAGTGCTTACCCCACCACCGGACACCATAGAGACCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS TCA 72 bp GAGTCTTGGGGAGAACGGTCACTCTGGGAGGCACGCTaGCAGCTCTGGTTCGGTTGGAGCGTTCCACCAAGA +
Preference number: 6 (lower is better)
Translates to: ESWGERSLWEAR*QLWFGWSVPPR
Trigger: TCTTGGTGGAACGCTCCAACCGAACCAGAGCTGTCAGCGTGCCTCCCAGAGTGACCGTTCTCCCCAAGACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS CAA 72 bp ATGAGGACGTTGGGCTTTCCGAGCTCCACACGAGTCTaGGGGAGAACGGTCACTCTGGGAGGCACGCTGACA +
Preference number: 6 (lower is better)
Translates to: MRTLGFPSSTRV*GRTVTLGGTLT
Trigger: TGTCAGCGTGCCTCCCAGAGTGACCGTTCTCCCCAAGACTCGTGTGGAGCTCGGAAAGCCCAACGTCCTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS CAA 90 bp TTCCCCGTCAAATTCGTGTGTGAACTGTCCAGAAGCGTCGTAAGATaGGTAGAAGGCCGGTCCATAGGAGCCCATGTGGTCGGCCTTGAT +
Preference number: 6 (lower is better)
Translates to: FPVKFVCELSRSVVR*VEGRSIGAHVVGLD
Trigger: ATCAAGGCCGACCACATGGGCTCCTATGGACCGGCCTTCTACCAATCTTACGACGCTTCTGGACAGTTCACACACGAATTTGACGGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS CAA 90 bp CAGACGCCACACGACCTCCTCGTTCTTCAGATCCACGGAGAAAATTaGTTCCCCGTCAAATTCGTGTGTGAACTGTCCAGAAGCGTCGTA +
Preference number: 6 (lower is better)
Translates to: QTPHDLLVLQIHGEN*FPVKFVCELSRSVV
Trigger: TACGACGCTTCTGGACAGTTCACACACGAATTTGACGGGGAACAAATTTTCTCCGTGGATCTGAAGAACGAGGAGGTCGTGTGGCGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS CAA 72 bp AAATTCGTGTGTGAACTGTCCAGAAGCGTCGTAAGATaGGTAGAAGGCCGGTCCATAGGAGCCCATGTGGTC +
Preference number: 6 (lower is better)
Translates to: KFVCELSRSVVR*VEGRSIGAHVV
Trigger: GACCACATGGGCTCCTATGGACCGGCCTTCTACCAATCTTACGACGCTTCTGGACAGTTCACACACGAATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8
CDS TCA 72 bp GGTTGGAGCGTTCCACCAAGATGTCCAGATGAGCTTTaGTCATGGAAATGCTCATCAGCCCACTCTGAAAGT +
Preference number: 6 (lower is better)
Translates to: GWSVPPRCPDEL*SWKCSSAHSES
Trigger: ACTTTCAGAGTGGGCTGATGAGCATTTCCATGATCAAAGCTCATCTGGACATCTTGGTGGAACGCTCCAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025192.8