Pregenerated sensors for H2-M9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067201Ensembl transcript IDs: ENSMUST00000087165.11, ENSMUST00000087167.5
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGGATGGAGGTTTCCCAGCCCTGCCTGTGTGGGAATATGAGAGATaGCCGGGGAATATACACAGTAAGAGTCAAGATAAGGCTTTTTCC | + |
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Preference number: 1 (lower is better) Translates to: MDGGFPALPVWEYER*PGNIHSKSQDKAFS Trigger: GGAAAAAGCCTTATCTTGACTCTTACTGTGTATATTCCCCGGTCATCTCTCATATTCCCACACAGGCAGGGCTGGGAAACCTCCATCCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| 3UTR GCA 90 bp | TTGGGGAAAGTGAAATTCCAATCATGGATGGAGGTTTCCCAGCCCTaGCTGTGTGGGAATATGAGAGATGACCGGGGAATATACACAGTA | + |
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Preference number: 1 (lower is better) Translates to: LGKVKFQSWMEVSQP*LCGNMRDDRGIYTV Trigger: TACTGTGTATATTCCCCGGTCATCTCTCATATTCCCACACAGGCAGGGCTGGGAAACCTCCATCCATGATTGGAATTTCACTTTCCCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| 3UTR CCA 90 bp | ACAGAAGCATGGAATTCTATATTGGGGAAAGTGAAATTCCAATCATaGATGGAGGTTTCCCAGCCCTGCCTGTGTGGGAATATGAGAGAT | + |
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Preference number: 1 (lower is better) Translates to: TEAWNSILGKVKFQS*MEVSQPCLCGNMRD Trigger: ATCTCTCATATTCCCACACAGGCAGGGCTGGGAAACCTCCATCCATGATTGGAATTTCACTTTCCCCAATATAGAATTCCATGCTTCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| 3UTR-3UTR GCA 90 bp | GAGGTTTCCCAGCCCTGCCTGTGTGGGAATATGAGAGATGACCGGGGAATATACGAACTGCTTACAGTGTaGTCAGAGGAGACAGACACA | + |
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Preference number: 2 (lower is better) Translates to: EVSQPCLCGNMRDDRGIYELLTV*SEETDT Trigger: TGTGTCTGTCTCCTCTGAGCACACTGTAAGCAGTTC...GTATATTCCCCGGTCATCTCTCATATTCCCACACAGGCAGGGCTGGGAAACCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| 3UTR GCA 72 bp | GTGAAATTCCAATCATGGATGGAGGTTTCCCAGCCCTaGCTGTGTGGGAATATGAGAGATGACCGGGGAATA | + |
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Preference number: 3 (lower is better) Translates to: VKFQSWMEVSQP*LCGNMRDDRGI Trigger: TATTCCCCGGTCATCTCTCATATTCCCACACAGGCAGGGCTGGGAAACCTCCATCCATGATTGGAATTTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| 3UTR TCA 72 bp | GGTTTCCCAGCCCTGCCTGTGTGGGAATATGAGAGATaGCCGGGGAATATACACAGTAAGAGTCAAGATAAG | + |
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Preference number: 3 (lower is better) Translates to: GFPALPVWEYER*PGNIHSKSQDK Trigger: CTTATCTTGACTCTTACTGTGTATATTCCCCGGTCATCTCTCATATTCCCACACAGGCAGGGCTGGGAAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS-3UTR GCA 90 bp | CACATAGTCACAGTCAGGTGTAGAAAGAGAAGGCACAATGGGAGGAGAAGCCAGCAGGACATCCTGTGTTaGCAACTCCCAAAACTCTGC | + |
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Preference number: 4 (lower is better) Translates to: HIVTVRCRKRRHNGRRSQQDILC*QLPKLC Trigger: GCAGAGTTTTGGGAGTTGGCAACACAGGATGTCCTG...CTGGCTTCTCCTCCCATTGTGCCTTCTCTTTCTACACCTGACTGTGACTATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS-3UTR GCA 90 bp | ATTGGGGAAAGTGAAATTCCAATCATGGATGGAGGTTTCCCAGCCCTGCCTGTGACCGCTCTCCATGTTTaGAGATCCTCATTCAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: IGESEIPIMDGGFPALPVTALHV*RSSFSV Trigger: CACACTGAATGAGGATCTGCAAACATGGAGAGCGGT...CACAGGCAGGGCTGGGAAACCTCCATCCATGATTGGAATTTCACTTTCCCCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS-3UTR TCA 90 bp | GACAGACACATAGTCACAGTCAGGTGTAGAAAGAGAAGGCACAATGGGAGGAGACGACTCTCCATCCTCTaGCTCTCTGATATACTGTTG | + |
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Preference number: 4 (lower is better) Translates to: DRHIVTVRCRKRRHNGRRRLSIL*LSDILL Trigger: CAACAGTATATCAGAGAGTCAGAGGATGGAGAGTCG...TCTCCTCCCATTGTGCCTTCTCTTTCTACACCTGACTGTGACTATGTGTCTGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS-3UTR TCA 90 bp | ACTGCTTACAGTGTGCTCAGAGGAGACAGACACATAGTCACAGTCAGGTGTAGAAATTCCATGAAGGCGTaGCTGAAGTACGTTCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: TAYSVLRGDRHIVTVRCRNSMKA*LKYVLC Trigger: GCAGAGAACGTACTTCAGTCACGCCTTCATGGAATT...TCTACACCTGACTGTGACTATGTGTCTGTCTCCTCTGAGCACACTGTAAGCAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS-3UTR TCA 90 bp | TACAGTGTGCTCAGAGGAGACAGACACATAGTCACAGTCAGGTGTAGAAAGAGAAAGAAAAGTCATCACTaGTCCCATAAGCAGAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: YSVLRGDRHIVTVRCRKRKKSHH*SHKQSP Trigger: GGGGCTCTGCTTATGGGATCAGTGATGACTTTTCTT...TCTCTTTCTACACCTGACTGTGACTATGTGTCTGTCTCCTCTGAGCACACTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS-3UTR GCA 90 bp | GACAGACACATAGTCACAGTCAGGTGTAGAAAGAGAAGGCACAATGGGAGGAGAACCATTTGGATGCTTTaGGATGACCAAGGTGACCAT | + |
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Preference number: 4 (lower is better) Translates to: DRHIVTVRCRKRRHNGRRTIWML*DDQGDH Trigger: ATGGTCACCTTGGTCATCGCAAAGCATCCAAATGGT...TCTCCTCCCATTGTGCCTTCTCTTTCTACACCTGACTGTGACTATGTGTCTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS-3UTR TCA 90 bp | ACTGCTTACAGTGTGCTCAGAGGAGACAGACACATAGTCACAGTCAGGTGTAGAGTTTCCTGGATTATGTaGTATCCAGTCATGCTATCA | + |
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Preference number: 4 (lower is better) Translates to: TAYSVLRGDRHIVTVRCRVSWIM*YPVMLS Trigger: TGATAGCATGACTGGATATCACATAATCCAGGAAAC...TCTACACCTGACTGTGACTATGTGTCTGTCTCCTCTGAGCACACTGTAAGCAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS-3UTR GCA 90 bp | GACAGACACATAGTCACAGTCAGGTGTAGAAAGAGAAGGCACAATGGGAGGAGATGTGATATCCAGTCATaGTATCATTATAGATGTGGA | + |
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Preference number: 4 (lower is better) Translates to: DRHIVTVRCRKRRHNGRRCDIQS*YHYRCG Trigger: TCCACATCTATAATGATAGCATGACTGGATATCACA...TCTCCTCCCATTGTGCCTTCTCTTTCTACACCTGACTGTGACTATGTGTCTGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS-3UTR CCA 90 bp | AGGATATCAGTCAATCACACAATCTGCCAAGAAGTTGCACAAACAAACACAAATGCCATGATAAGAAGGTaGACACAAATCTCAGAGTGT | + |
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Preference number: 4 (lower is better) Translates to: RISVNHTICQEVAQTNTNAMIRR*TQISEC Trigger: ACACTCTGAGATTTGTGTCCACCTTCTTATCATGGC...ATTTGTGTTTGTTTGTGCAACTTCTTGGCAGATTGTGTGATTGACTGATATCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS TCA 90 bp | GGGGTGTCTGTTCTCAGCAAATACTTCTTCCCAAAGTTCAGGTATTaGAGGAGCCCCTCCACACATGCACCCAGCAGGAAAGACTTTGAC | + |
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Preference number: 5 (lower is better) Translates to: GVSVLSKYFFPKFRY*RSPSTHAPSRKDFD Trigger: GTCAAAGTCTTTCCTGCTGGGTGCATGTGTGGAGGGGCTCCTTCAATACCTGAACTTTGGGAAGAAGTATTTGCTGAGAACAGACACCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087167.5 |
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| CDS TCA 90 bp | GGAGGATCTGTTCTCAGCAAATACTTCTTCCCAAAGTTCAGGTATTaGAGGAGCCCCTCCACACATGCACCCAGCAGGAAAGACTTTGAC | + |
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Preference number: 5 (lower is better) Translates to: GGSVLSKYFFPKFRY*RSPSTHAPSRKDFD Trigger: GTCAAAGTCTTTCCTGCTGGGTGCATGTGTGGAGGGGCTCCTTCAATACCTGAACTTTGGGAAGAAGTATTTGCTGAGAACAGATCCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS GCA 90 bp | GATAAGAAGGTGGACACAAATCTCAGAGTGTGTGAACCATTTGGATaGTTTGCGATGACCAAGGTGACCATGAACAGCAGGAGGAGAGGC | + |
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Preference number: 5 (lower is better) Translates to: DKKVDTNLRVCEPFG*FAMTKVTMNSRRRG Trigger: GCCTCTCCTCCTGCTGTTCATGGTCACCTTGGTCATCGCAAAGCATCCAAATGGTTCACACACTCTGAGATTTGTGTCCACCTTCTTATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS-3UTR CAA 90 bp | AAATTCCAATCATGGATGGAGGTTTCCCAGCCCTGCCTGTGTGGGAATATGAGAAAGTACGTTCTCTGCTaGACTTGGCAGCCATATGTT | + |
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Preference number: 5 (lower is better) Translates to: KFQSWMEVSQPCLCGNMRKYVLC*TWQPYV Trigger: AACATATGGCTGCCAAGTCAAGCAGAGAACGTACTT...TCTCATATTCCCACACAGGCAGGGCTGGGAAACCTCCATCCATGATTGGAATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS TCA 90 bp | TCTGCATTTAGCTCATTCAACCATGGTACCCGACTCTCCATCCTCTaGCTCTCTGATATACTGTTGAATCCCATGATCTGTGTTTCATCC | + |
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Preference number: 5 (lower is better) Translates to: SAFSSFNHGTRLSIL*LSDILLNPMICVSS Trigger: GGATGAAACACAGATCATGGGATTCAACAGTATATCAGAGAGTCAGAGGATGGAGAGTCGGGTACCATGGTTGAATGAGCTAAATGCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS-3UTR CAA 90 bp | ACTGCTTACAGTGTGCTCAGAGGAGACAGACACATAGTCACAGTCAGGTGTAGACCAGCAGGAAAGACTTaGACGACTTTACAAGATTTA | + |
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Preference number: 5 (lower is better) Translates to: TAYSVLRGDRHIVTVRCRPAGKT*TTLQDL Trigger: TAAATCTTGTAAAGTCGTCAAAGTCTTTCCTGCTGG...TCTACACCTGACTGTGACTATGTGTCTGTCTCCTCTGAGCACACTGTAAGCAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS TCA 90 bp | GTATTGAAGGAGCCCCTCCACACATGCACCCAGCAGGAAAGACTTTaGCGACTTTACAAGATTTATTTTCTCCCACTCTTCCTTAACTAT | + |
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Preference number: 5 (lower is better) Translates to: VLKEPLHTCTQQERL*RLYKIYFLPLFLNY Trigger: ATAGTTAAGGAAGAGTGGGAGAAAATAAATCTTGTAAAGTCGTCAAAGTCTTTCCTGCTGGGTGCATGTGTGGAGGGGCTCCTTCAATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS GCA 90 bp | CTTTACAAGATTTATTTTCTCCCACTCTTCCTTAACTATCTCAGCTaGCTTGCCAACCGCTCTCCATGTTTGCAGATCCTCATTCAGTGT | + |
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Preference number: 5 (lower is better) Translates to: LYKIYFLPLFLNYLS*LANRSPCLQILIQC Trigger: ACACTGAATGAGGATCTGCAAACATGGAGAGCGGTTGGCAAGGCAGCTGAGATAGTTAAGGAAGAGTGGGAGAAAATAAATCTTGTAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS-3UTR CAA 90 bp | CACAATGGGAGGAGAAGCCAGAAACAGTGTTTAATGGCTCTGTACCACATCTGTCTCTCTGATATACTGTaGAATCCCATGATCTGTGTT | + |
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Preference number: 5 (lower is better) Translates to: HNGRRSQKQCLMALYHICLSDIL*NPMICV Trigger: AACACAGATCATGGGATTCAACAGTATATCAGAGAG...ACAGATGTGGTACAGAGCCATTAAACACTGTTTCTGGCTTCTCCTCCCATTGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087165.11 |
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| CDS TCA 72 bp | GTTCTCAGCAAATACTTCTTCCCAAAGTTCAGGTATTaGAGGAGCCCCTCCACACATGCACCCAGCAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: VLSKYFFPKFRY*RSPSTHAPSRK Trigger: TTTCCTGCTGGGTGCATGTGTGGAGGGGCTCCTTCAATACCTGAACTTTGGGAAGAAGTATTTGCTGAGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS CAA 72 bp | TGTTCTCAGCAAATACTTCTTCCCAAAGTTCAGGTATaGAAGGAGCCCCTCCACACATGCACCCAGCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: CSQQILLPKVQV*KEPLHTCTQQE Trigger: TTCCTGCTGGGTGCATGTGTGGAGGGGCTCCTTCAATACCTGAACTTTGGGAAGAAGTATTTGCTGAGAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS TCA 72 bp | GAGCCCCTCCACACATGCACCCAGCAGGAAAGACTTTaGCGACTTTACAAGATTTATTTTCTCCCACTCTTC | + |
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Preference number: 6 (lower is better) Translates to: EPLHTCTQQERL*RLYKIYFLPLF Trigger: GAAGAGTGGGAGAAAATAAATCTTGTAAAGTCGTCAAAGTCTTTCCTGCTGGGTGCATGTGTGGAGGGGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS CAA 72 bp | ATTTTCTCCCACTCTTCCTTAACTATCTCAGCTGCCTaGCCAACCGCTCTCCATGTTTGCAGATCCTCATTC | + |
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Preference number: 6 (lower is better) Translates to: IFSHSSLTISAA*PTALHVCRSSF Trigger: GAATGAGGATCTGCAAACATGGAGAGCGGTTGGCAAGGCAGCTGAGATAGTTAAGGAAGAGTGGGAGAAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS CAA 72 bp | GGAGCCCCTCCACACATGCACCCAGCAGGAAAGACTTaGACGACTTTACAAGATTTATTTTCTCCCACTCTT | + |
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Preference number: 6 (lower is better) Translates to: GAPPHMHPAGKT*TTLQDLFSPTL Trigger: AAGAGTGGGAGAAAATAAATCTTGTAAAGTCGTCAAAGTCTTTCCTGCTGGGTGCATGTGTGGAGGGGCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS TCA 72 bp | CAACCATGGTACCCGACTCTCCATCCTCTGACTCTCTaGTATACTGTTGAATCCCATGATCTGTGTTTCATC | + |
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Preference number: 6 (lower is better) Translates to: QPWYPTLHPLTL*YTVESHDLCFI Trigger: GATGAAACACAGATCATGGGATTCAACAGTATATCAGAGAGTCAGAGGATGGAGAGTCGGGTACCATGGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS TCA 72 bp | AGCTCATTCAACCATGGTACCCGACTCTCCATCCTCTaGCTCTCTGATATACTGTTGAATCCCATGATCTGT | + |
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Preference number: 6 (lower is better) Translates to: SSFNHGTRLSIL*LSDILLNPMIC Trigger: ACAGATCATGGGATTCAACAGTATATCAGAGAGTCAGAGGATGGAGAGTCGGGTACCATGGTTGAATGAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS GCA 72 bp | ATTTATTTTCTCCCACTCTTCCTTAACTATCTCAGCTaGCTTGCCAACCGCTCTCCATGTTTGCAGATCCTC | + |
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Preference number: 6 (lower is better) Translates to: IYFLPLFLNYLS*LANRSPCLQIL Trigger: GAGGATCTGCAAACATGGAGAGCGGTTGGCAAGGCAGCTGAGATAGTTAAGGAAGAGTGGGAGAAAATAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS CAA 72 bp | AACTATCTCAGCTGCCTTGCCAACCGCTCTCCATGTTaGCAGATCCTCATTCAGTGTGATGTAATCATGTGT | + |
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Preference number: 6 (lower is better) Translates to: NYLSCLANRSPC*QILIQCDVIMC Trigger: ACACATGATTACATCACACTGAATGAGGATCTGCAAACATGGAGAGCGGTTGGCAAGGCAGCTGAGATAGTT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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| CDS CAA 90 bp | ACAAGATTTATTTTCTCCCACTCTTCCTTAACTATCTCAGCTGCCTaGCCAACCGCTCTCCATGTTTGCAGATCCTCATTCAGTGTGATG | + |
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Preference number: 6 (lower is better) Translates to: TRFIFSHSSLTISAA*PTALHVCRSSFSVM Trigger: CATCACACTGAATGAGGATCTGCAAACATGGAGAGCGGTTGGCAAGGCAGCTGAGATAGTTAAGGAAGAGTGGGAGAAAATAAATCTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087165.11 ENSMUST00000087167.5 |
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