Pregenerated sensors for H2-M5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024459Ensembl transcript IDs: ENSMUST00000113667.4, ENSMUST00000169189.8, ENSMUST00000176712.8, ENSMUST00000176784.8
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TCCTTTTCCATCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCCGCAGCTGTGTCGCCTaGGACCCAGGAGTGCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: SFSICGNKKMGERQDGKSRSCVA*DPGVQV Trigger: GACCTGCACTCCTGGGTCGCAGGCGACACAGCTGCG...GGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGATGGAAAAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR TCA 90 bp | GGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCTAGCAGAATTCCTGGGCCCAGCACCTCAGGGTaGCTTCACCTTCAGGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: GIKRWESGRMGNPSRIPGPSTSG*LHLQVW Trigger: CCAGACCTGAAGGTGAAGTCACCCTGAGGTGCTGGG...CCCAGGAATTCTGCTAGGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR TCA 90 bp | TTTCCATCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCTAGCCCTTCAGGTCTGGGGTaGTGGGTCACATGTGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: FPSVGIKRWESGRMGNPSPSGLG*WVTCAL Trigger: CAAGGCACATGTGACCCATCACCCCAGACCTGAAGG...GCTAGGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGATGGAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR TCA 90 bp | GGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCTAGCAGAATTCCTGGGCAGGTCTGGTCTCAATaGGGTCCATGTCCTGAGTCA | + |
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Preference number: 4 (lower is better) Translates to: GIKRWESGRMGNPSRIPGQVWSQ*GPCPES Trigger: TGACTCAGGACATGGACCTCATTGAGACCAGACCTG...CCCAGGAATTCTGCTAGGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR CCA 90 bp | TTTCCATCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCTAGCGAGGAAGAGTCCATCTaGCCCCACTTCGCAGCCATA | + |
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Preference number: 4 (lower is better) Translates to: FPSVGIKRWESGRMGNPSEEESI*PHFAAI Trigger: TATGGCTGCGAAGTGGGGCCAGATGGACTCTTCCTC...GCTAGGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGATGGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR CCA 90 bp | AACTCATCCTTTTCCATCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGCTTCACCTTCAGGTCTaGGGTGATGGGTCACATGTG | + |
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Preference number: 4 (lower is better) Translates to: NSSFSICGNKKMGERQDGLHLQV*GDGSHV Trigger: CACATGTGACCCATCACCCCAGACCTGAAGGTGAAG...CCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGATGGAAAAGGATGAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR TCA 90 bp | TCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCTAGCAGAATTATGAGGTCCATGTCCTaGGTCAGGTCTTCCTCATCC | + |
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Preference number: 4 (lower is better) Translates to: SVGIKRWESGRMGNPSRIMRSMS*VRSSSS Trigger: GGATGAGGAAGACCTGACTCAGGACATGGACCTCAT...AATTCTGCTAGGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR GCA 90 bp | AACTCATCCTTTTCCATCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGGTGATGGGTCACATGTaGCTTGGGAGGATCTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: NSSFSICGNKKMGERQDGVMGHM*LGRICS Trigger: AGAACAGATCCTCCCAAGGCACATGTGACCCATCAC...CCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGATGGAAAAGGATGAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR CCA 90 bp | TCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCTAGCAGAATTTCCCTCAAACCAGGCTaGGTCATGGTGGTGGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: SVGIKRWESGRMGNPSRISLKPG*VMVVAK Trigger: TTTTGCCACCACCATGACCCAGCCTGGTTTGAGGGA...AATTCTGCTAGGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR GCA 90 bp | TTTCCATCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCTAGCATGTCCATGGCCTCCTaGAAATTCACTAGGGCAATC | + |
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Preference number: 4 (lower is better) Translates to: FPSVGIKRWESGRMGNPSMSMAS*KFTRAI Trigger: GATTGCCCTAGTGAATTTGCAGGAGGCCATGGACAT...GCTAGGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGATGGAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR GCA 90 bp | TTTCCATCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCTAGCTCTTCCTCATCCCACTaGCAGGTCAGGATGATGTTA | + |
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Preference number: 4 (lower is better) Translates to: FPSVGIKRWESGRMGNPSSSSSH*QVRMML Trigger: TAACATCATCCTGACCTGGCAGTGGGATGAGGAAGA...GCTAGGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGATGGAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR GCA 90 bp | AACTCATCCTTTTCCATCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGACAAAGATGAAGGAATaGTCCCTCAAACCAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: NSSFSICGNKKMGERQDGTKMKE*SLKPGW Trigger: CCAGCCTGGTTTGAGGGAGCATTCCTTCATCTTTGT...CCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGATGGAAAAGGATGAGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR CCA 90 bp | TCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCTAGCAGAATTGGGTCACATGTGCCTTaGGAGGATCTGTTCTTAGCA | + |
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Preference number: 4 (lower is better) Translates to: SVGIKRWESGRMGNPSRIGSHVP*EDLFLA Trigger: TGCTAAGAACAGATCCTCCCAAGGCACATGTGACCC...AATTCTGCTAGGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR TCA 90 bp | TTTCCATCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCTAGCCGTGGCTCCATTCTCTaGTTTTTCCCCTTATTGTTG | + |
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Preference number: 4 (lower is better) Translates to: FPSVGIKRWESGRMGNPSRGSIL*FFPLLL Trigger: CAACAATAAGGGGAAAAATCAGAGAATGGAGCCACG...GCTAGGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGATGGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR CCA 90 bp | TCCTTTTCCATCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCGGTTGTAGATGTCCATaGCCTCCTGCAAATTCACTA | + |
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Preference number: 4 (lower is better) Translates to: SFSICGNKKMGERQDGKSGCRCP*PPANSL Trigger: TAGTGAATTTGCAGGAGGCCATGGACATCTACAACC...GGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGATGGAAAAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR GCA 90 bp | AACTCATCCTTTTCCATCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGATGATGGGAATGGTGTaGTTAGAAGGGTCCCATTTT | + |
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Preference number: 4 (lower is better) Translates to: NSSFSICGNKKMGERQDGMMGMV*LEGSHF Trigger: AAAATGGGACCCTTCTAAGCACACCATTCCCATCAT...CCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGATGGAAAAGGATGAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS TCA 90 bp | CAGCTGTGTCGCCTGCGACCCAGGAGTGCAGGTCCGGGCTTAGGGTaGGGTAATCGCGGCCGTCGTATGCGTGCTTCTCATGCCCACGGA | + |
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Preference number: 5 (lower is better) Translates to: QLCRLRPRSAGPGLG*GNRGRRMRASHAHG Trigger: TCCGTGGGCATGAGAAGCACGCATACGACGGCCGCGATTACCTCACCCTAAGCCCGGACCTGCACTCCTGGGTCGCAGGCGACACAGCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000169189.8 ENSMUST00000176712.8 ENSMUST00000176784.8 |
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| CDS-3UTR CAA 90 bp | TCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCTAGCAGAATTTGGGTCACATGTGCCTaGGGAGGATCTGTTCTTAGC | + |
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Preference number: 5 (lower is better) Translates to: SVGIKRWESGRMGNPSRIWVTCA*GGSVLS Trigger: GCTAAGAACAGATCCTCCCAAGGCACATGTGACCCA...AATTCTGCTAGGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS-3UTR CAA 90 bp | TCTGTGGGAATAAAAAGATGGGAGAGCGGCAGGATGGGAAATCCTAGCAGAATTCAAGAAGGATTGCCTTaGCTCAGAGACACCAGACTT | + |
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Preference number: 5 (lower is better) Translates to: SVGIKRWESGRMGNPSRIQEGLP*LRDTRL Trigger: AAGTCTGGTGTCTCTGAGCAAAGGCAATCCTTCTTG...AATTCTGCTAGGATTTCCCATCCTGCCGCTCTCCCATCTTTTTATTCCCACAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169189.8 |
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| CDS TCA 72 bp | GCTCAGAGACACCAGACTTCTCCCACCTGCGCAGCGTaGTCTGCGCAGCTGTGTCGCCTGCGACCCAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: AQRHQTSPTCAA*SAQLCRLRPRS Trigger: ACTCCTGGGTCGCAGGCGACACAGCTGCGCAGATCACGCTGCGCAGGTGGGAGAAGTCTGGTGTCTCTGAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000169189.8 ENSMUST00000176712.8 ENSMUST00000176784.8 |
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| CDS GCA 72 bp | GACTCCACACACTCGCCCTTCAAGAAGGATTGCCTTTaGTCAGAGACACCAGACTTCTCCCACCTGCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: DSTHSPFKKDCL*SETPDFSHLRS Trigger: GCTGCGCAGGTGGGAGAAGTCTGGTGTCTCTGAGCAAAGGCAATCCTTCTTGAAGGGCGAGTGTGTGGAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000169189.8 ENSMUST00000176712.8 ENSMUST00000176784.8 |
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| CDS GCA 72 bp | TGTGTGTCGTCCACGAAGACGACAAAGATGAAGGAATaGTCCCTCAAACCAGGCTGGGTCATGGTGGTGGCA | + |
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Preference number: 6 (lower is better) Translates to: CVSSTKTTKMKE*SLKPGWVMVVA Trigger: TGCCACCACCATGACCCAGCCTGGTTTGAGGGAGCATTCCTTCATCTTTGTCGTCTTCGTGGACGACACACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000169189.8 ENSMUST00000176712.8 ENSMUST00000176784.8 |
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| CDS TCA 72 bp | ACAGGAACTGTGTGTCGTCCACGAAGACGACAAAGATaGAGGAATGCTCCCTCAAACCAGGCTGGGTCATGG | + |
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Preference number: 6 (lower is better) Translates to: TGTVCRPRRRQR*RNAPSNQAGSW Trigger: CCATGACCCAGCCTGGTTTGAGGGAGCATTCCTTCATCTTTGTCGTCTTCGTGGACGACACACAGTTCCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000169189.8 ENSMUST00000176712.8 ENSMUST00000176784.8 |
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| CDS GCA 72 bp | AGCCATACACACACTGAAAGACGTGAGAGCCATCCTTaGTGTGGTTGTAGATGTCCATGGCCTCCTGCAAAT | + |
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Preference number: 6 (lower is better) Translates to: SHTHTERRESHP*CGCRCPWPPAN Trigger: ATTTGCAGGAGGCCATGGACATCTACAACCACAGCAAGGATGGCTCTCACGTCTTTCAGTGTGTGTATGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000169189.8 ENSMUST00000176712.8 ENSMUST00000176784.8 |
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| CDS CCA 72 bp | CGTGAGAGCCATCCTTGCTGTGGTTGTAGATGTCCATaGCCTCCTGCAAATTCACTAGGGCAATCTTCTCAA | + |
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Preference number: 6 (lower is better) Translates to: RESHPCCGCRCP*PPANSLGQSSQ Trigger: TTGAGAAGATTGCCCTAGTGAATTTGCAGGAGGCCATGGACATCTACAACCACAGCAAGGATGGCTCTCACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000169189.8 ENSMUST00000176712.8 ENSMUST00000176784.8 |
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| CDS CCA 72 bp | TGGGAGGATCATCCTTGCTGTGGTTGTAGATGTCCATaGCCTCCTGCAAATTCACTAGGGCAATCTTCTCAA | + |
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Preference number: 6 (lower is better) Translates to: WEDHPCCGCRCP*PPANSLGQSSQ Trigger: TTGAGAAGATTGCCCTAGTGAATTTGCAGGAGGCCATGGACATCTACAACCACAGCAAGGATGATCCTCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113667.4 |
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| CDS CAA 72 bp | TCCTGCAAATTCACTAGGGCAATCTTCTCAATGACCTaGACAGTCCTGGTCTGCTGTTCCCAATACTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: SCKFTRAIFSMT*TVLVCCSQYSG Trigger: GCCAGAGTATTGGGAACAGCAGACCAGGACTGTCAAGGTCATTGAGAAGATTGCCCTAGTGAATTTGCAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113667.4 ENSMUST00000169189.8 ENSMUST00000176712.8 ENSMUST00000176784.8 |
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