Pregenerated sensors for H2-M2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016283Ensembl transcript IDs: ENSMUST00000016427.11, ENSMUST00000171139.3
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGGAATAATGGGCCACACTCCTTCCCAACAAGGAGGCAGAGAAAACTTATCTGGCCCAGATCTCAACCTTaGCCCTGCTCAGGATCTCCA | + |
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Preference number: 2 (lower is better) Translates to: GNNGPHSFPTRRQRKLIWPRSQP*PCSGSP Trigger: TGGAGATCCTGAGCAGGGTCAAGGTTGAGATCTGGG...CCAGATAAGTTTTCTCTGCCTCCTTGTTGGGAAGGAGTGTGGCCCATTATTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016427.11 |
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| CDS-3UTR GCA 90 bp | GGGAATAATGGGCCACACTCCTTCCCAACAAGGAGGCAGAGAAAACTTATCTGGGTGATGGGTCACATATaGCTTTGGGGGCTCTGTGCG | + |
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Preference number: 4 (lower is better) Translates to: GNNGPHSFPTRRQRKLIWVMGHI*LWGLCA Trigger: CGCACAGAGCCCCCAAAGGCATATGTGACCCATCAC...CCAGATAAGTTTTCTCTGCCTCCTTGTTGGGAAGGAGTGTGGCCCATTATTCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR TCA 90 bp | GGGAATAATGGGCCACACTCCTTCCCAACAAGGAGGCAGAGAAAACTTATCTGGCCTTCAGGTCTGGGGTaGTGGGTCACATATGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: GNNGPHSFPTRRQRKLIWPSGLG*WVTYAF Trigger: AAAGGCATATGTGACCCATCACCCCAGACCTGAAGG...CCAGATAAGTTTTCTCTGCCTCCTTGTTGGGAAGGAGTGTGGCCCATTATTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR TCA 90 bp | AATTGTGTCTTTGGGAATAATGGGCCACACTCCTTCCCAACAAGGAGGCAGAGAGACAAGAGTAGCCACTaGAGCTCCCAGGAGAACCAG | + |
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Preference number: 4 (lower is better) Translates to: NCVFGNNGPHSFPTRRQRDKSSH*SSQENQ Trigger: CTGGTTCTCCTGGGAGCTTCAGTGGCTACTCTTGTC...TCTCTGCCTCCTTGTTGGGAAGGAGTGTGGCCCATTATTCCCAAAGACACAATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171139.3 |
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| CDS-3UTR CCA 90 bp | AATTGTGTCTTTGGGAATAATGGGCCACACTCCTTCCCAACAAGGAGGCAGAGACATCACCTTCAGGTCTaGGGTGATGGGTCACATATG | + |
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Preference number: 4 (lower is better) Translates to: NCVFGNNGPHSFPTRRQRHHLQV*GDGSHM Trigger: CATATGTGACCCATCACCCCAGACCTGAAGGTGATG...TCTCTGCCTCCTTGTTGGGAAGGAGTGTGGCCCATTATTCCCAAAGACACAATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR TCA 90 bp | GGGAATAATGGGCCACACTCCTTCCCAACAAGGAGGCAGAGAAAACTTATCTGGGATCTTCATTCAGAGTaGGGTAATCTTGCCCATCAT | + |
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Preference number: 4 (lower is better) Translates to: GNNGPHSFPTRRQRKLIWDLHSE*GNLAHH Trigger: ATGATGGGCAAGATTACCTCACTCTGAATGAAGATC...CCAGATAAGTTTTCTCTGCCTCCTTGTTGGGAAGGAGTGTGGCCCATTATTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR TCA 90 bp | GGGAATAATGGGCCACACTCCTTCCCAACAAGGAGGCAGAGAAAACTTATCTGGATGAAAATGAAAGACTaGGGAGGTCTACTCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: GNNGPHSFPTRRQRKLIWMKMKD*GGLLHL Trigger: GAGATGGAGTAGACCTCCTCAGTCTTTCATTTTCAT...CCAGATAAGTTTTCTCTGCCTCCTTGTTGGGAAGGAGTGTGGCCCATTATTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171139.3 |
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| CDS-3UTR GCA 90 bp | GTTTCAGTTATGACATTCAGAATTGTGTCTTTGGGAATAATGGGCCACACTCCTTCCTTTAAAGGTCTGTaGCAGGGCAAGGGAAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: VSVMTFRIVSLGIMGHTPSFKGL*QGKGSP Trigger: GGGGCTTCCCTTGCCCTGGCACAGACCTTTAAAGGA...AGGAGTGTGGCCCATTATTCCCAAAGACACAATTCTGAATGTCATAACTGAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR GCA 90 bp | GGGAATAATGGGCCACACTCCTTCCCAACAAGGAGGCAGAGAAAACTTATCTGGGCCTCATTGTCAAAATaGACAAACTCTGTGTCATCC | + |
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Preference number: 4 (lower is better) Translates to: GNNGPHSFPTRRQRKLIWASLSK*TNSVSS Trigger: GGATGACACAGAGTTTGTGCATTTTGACAATGAGGC...CCAGATAAGTTTTCTCTGCCTCCTTGTTGGGAAGGAGTGTGGCCCATTATTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR GCA 90 bp | GTTTCAGTTATGACATTCAGAATTGTGTCTTTGGGAATAATGGGCCACACTCCTGTGATGGGTCACATATaGCTTTGGGGGCTCTGTGCG | + |
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Preference number: 4 (lower is better) Translates to: VSVMTFRIVSLGIMGHTPVMGHI*LWGLCA Trigger: CGCACAGAGCCCCCAAAGGCATATGTGACCCATCAC...AGGAGTGTGGCCCATTATTCCCAAAGACACAATTCTGAATGTCATAACTGAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR TCA 90 bp | AATTGTGTCTTTGGGAATAATGGGCCACACTCCTTCCCAACAAGGAGGCAGAGAGATCTTCATTCAGAGTaGGGTAATCTTGCCCATCAT | + |
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Preference number: 4 (lower is better) Translates to: NCVFGNNGPHSFPTRRQRDLHSE*GNLAHH Trigger: ATGATGGGCAAGATTACCTCACTCTGAATGAAGATC...TCTCTGCCTCCTTGTTGGGAAGGAGTGTGGCCCATTATTCCCAAAGACACAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR TCA 90 bp | GTTTCAGTTATGACATTCAGAATTGTGTCTTTGGGAATAATGGGCCACACTCCTCCTTCAGGTCTGGGGTaGTGGGTCACATATGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: VSVMTFRIVSLGIMGHTPPSGLG*WVTYAF Trigger: AAAGGCATATGTGACCCATCACCCCAGACCTGAAGG...AGGAGTGTGGCCCATTATTCCCAAAGACACAATTCTGAATGTCATAACTGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR GCA 90 bp | TCCCAGGAGAACCAGGCCAACAGCAACTATTATGATGAAAATGAAAGACTGAGGTCCTCCCCATCTCTTTaGCAGATCATGATGATGTCA | + |
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Preference number: 4 (lower is better) Translates to: SQENQANSNYYDENERLRSSPSL*QIMMMS Trigger: TGACATCATCATGATCTGGCAAAGAGATGGGGAGGA...CCTCAGTCTTTCATTTTCATCATAATAGTTGCTGTTGGCCTGGTTCTCCTGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016427.11 |
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| CDS-3UTR CCA 90 bp | TCCCAGGAGAACCAGGCCAACAGCAACTATTATGATGAAAATGAAAGACTGAGGAAGTACCGCAAGGAGTaGGATCCTTTAAAGGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: SQENQANSNYYDENERLRKYRKE*DPLKVC Trigger: ACAGACCTTTAAAGGATCCCACTCCTTGCGGTACTT...CCTCAGTCTTTCATTTTCATCATAATAGTTGCTGTTGGCCTGGTTCTCCTGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016427.11 |
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| CDS-3UTR CCA 90 bp | GTTTCAGTTATGACATTCAGAATTGTGTCTTTGGGAATAATGGGCCACACTCCTTTCGCAATGCGTGTCTaGTCATCCCAGTACTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: VSVMTFRIVSLGIMGHTPFAMRV*SSQYFC Trigger: ACAGAAGTACTGGGATGACCAGACACGCATTGCGAA...AGGAGTGTGGCCCATTATTCCCAAAGACACAATTCTGAATGTCATAACTGAAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR CCA 90 bp | GTTTCAGTTATGACATTCAGAATTGTGTCTTTGGGAATAATGGGCCACACTCCTAAGTACCGCAAGGAGTaGGATCCTTTAAAGGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: VSVMTFRIVSLGIMGHTPKYRKE*DPLKVC Trigger: ACAGACCTTTAAAGGATCCCACTCCTTGCGGTACTT...AGGAGTGTGGCCCATTATTCCCAAAGACACAATTCTGAATGTCATAACTGAAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS GCA 90 bp | TGCGATGTCGAAGTACCGCAAGGAGTGGGATCCTTTAAAGGTCTGTaGCAGGGCAAGGGAAGCCCCAAGCAGCAGGTAGAGAGTGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: CDVEVPQGVGSFKGL*QGKGSPKQQVESEE Trigger: CTCTTCACTCTCTACCTGCTGCTTGGGGCTTCCCTTGCCCTGGCACAGACCTTTAAAGGATCCCACTCCTTGCGGTACTTCGACATCGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR CAA 90 bp | AATTGTGTCTTTGGGAATAATGGGCCACACTCCTTCCCAACAAGGAGGCAGAGAGGGTCACATATGCCTTaGGGGGCTCTGTGCGCAGTA | + |
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Preference number: 5 (lower is better) Translates to: NCVFGNNGPHSFPTRRQRGSHMP*GALCAV Trigger: TACTGCGCACAGAGCCCCCAAAGGCATATGTGACCC...TCTCTGCCTCCTTGTTGGGAAGGAGTGTGGCCCATTATTCCCAAAGACACAATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR CAA 90 bp | GGGAATAATGGGCCACACTCCTTCCCAACAAGGAGGCAGAGAAAACTTATCTGGCAGAGTGAGGTAATCTaGCCCATCATAACCAAACTG | + |
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Preference number: 5 (lower is better) Translates to: GNNGPHSFPTRRQRKLIWQSEVI*PIITKL Trigger: CAGTTTGGTTATGATGGGCAAGATTACCTCACTCTG...CCAGATAAGTTTTCTCTGCCTCCTTGTTGGGAAGGAGTGTGGCCCATTATTCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS-3UTR CAA 90 bp | GTTTCAGTTATGACATTCAGAATTGTGTCTTTGGGAATAATGGGCCACACTCCTGGGTCACATATGCCTTaGGGGGCTCTGTGCGCAGTA | + |
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Preference number: 5 (lower is better) Translates to: VSVMTFRIVSLGIMGHTPGSHMP*GALCAV Trigger: TACTGCGCACAGAGCCCCCAAAGGCATATGTGACCC...AGGAGTGTGGCCCATTATTCCCAAAGACACAATTCTGAATGTCATAACTGAAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS GCA 72 bp | GAAGTACCGCAAGGAGTGGGATCCTTTAAAGGTCTGTaGCAGGGCAAGGGAAGCCCCAAGCAGCAGGTAGAG | + |
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Preference number: 6 (lower is better) Translates to: EVPQGVGSFKGL*QGKGSPKQQVE Trigger: CTCTACCTGCTGCTTGGGGCTTCCCTTGCCCTGGCACAGACCTTTAAAGGATCCCACTCCTTGCGGTACTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS GCA 72 bp | CCACTCTCTACGGGTGATCTCAGCTGCCGCATCTGCTaGAGTCCAGGTGCTCAGATCTTCATTCAGAGTGAG | + |
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Preference number: 6 (lower is better) Translates to: PLSTGDLSCRIC*SPGAQIFIQSE Trigger: CTCACTCTGAATGAAGATCTGAGCACCTGGACTGCAGCAGATGCGGCAGCTGAGATCACCCGTAGAGAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS GCA 72 bp | ATTAGTTGCCTCCCACTCTCTACGGGTGATCTCAGCTaGCGCATCTGCTGCAGTCCAGGTGCTCAGATCTTC | + |
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Preference number: 6 (lower is better) Translates to: ISCLPLSTGDLS*RICCSPGAQIF Trigger: GAAGATCTGAGCACCTGGACTGCAGCAGATGCGGCAGCTGAGATCACCCGTAGAGAGTGGGAGGCAACTAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS CAA 72 bp | CACCTTCAGGTCTGGGGTGATGGGTCACATATGCCTTaGGGGGCTCTGTGCGCAGTAGAGTCTCATTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: HLQVWGDGSHMP*GALCAVESHFP Trigger: TGGGAAATGAGACTCTACTGCGCACAGAGCCCCCAAAGGCATATGTGACCCATCACCCCAGACCTGAAGGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS CCA 72 bp | GGTCTTGACACTGCGATGTCGAAGTACCGCAAGGAGTaGGATCCTTTAAAGGTCTGTGCCAGGGCAAGGGAA | + |
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Preference number: 6 (lower is better) Translates to: GLDTAMSKYRKE*DPLKVCARARE Trigger: TTCCCTTGCCCTGGCACAGACCTTTAAAGGATCCCACTCCTTGCGGTACTTCGACATCGCAGTGTCAAGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS CCA 72 bp | CTAATCTGCTGTTCTGCAGCTTTCGCAATGCGTGTCTaGTCATCCCAGTACTTCTGTCCCATCTGTTCCATC | + |
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Preference number: 6 (lower is better) Translates to: LICCSAAFAMRV*SSQYFCPICSI Trigger: GATGGAACAGATGGGACAGAAGTACTGGGATGACCAGACACGCATTGCGAAAGCTGCAGAACAGCAGATTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS CCA 72 bp | CGTCTGGTCCAATGTAGCAGCCAGTCATCCTTTGGATaGTGTGAGAACTGTTCTGGCTCTGGTTGTAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: RLVQCSSQSSFG*CENCSGSGCSS Trigger: ACTACTACAACCAGAGCCAGAACAGTTCTCACACCATCCAAAGGATGACTGGCTGCTACATTGGACCAGACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS TCA 72 bp | CTGCTGCAGTCCAGGTGCTCAGATCTTCATTCAGAGTaGGGTAATCTTGCCCATCATAACCAAACTGACGGT | + |
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Preference number: 6 (lower is better) Translates to: LLQSRCSDLHSE*GNLAHHNQTDG Trigger: ACCGTCAGTTTGGTTATGATGGGCAAGATTACCTCACTCTGAATGAAGATCTGAGCACCTGGACTGCAGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016427.11 ENSMUST00000171139.3 |
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| CDS TCA 72 bp | AGGCCAACAGCAACTATTATGATGAAAATGAAAGACTaGGGAGGTCTACTCCATCTCAGGGTGAGGGGCTCA | + |
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Preference number: 6 (lower is better) Translates to: RPTATIMMKMKD*GGLLHLRVRGS Trigger: TGAGCCCCTCACCCTGAGATGGAGTAGACCTCCTCAGTCTTTCATTTTCATCATAATAGTTGCTGTTGGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171139.3 |
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