Pregenerated sensors for H2-M11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037537

Ensembl transcript IDs: ENSMUST00000041964.7

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CCATCCCCTGTAGGCATGGTCTCCGTGACCTCCATGTCCAGGGTTTaGTTGCTTTTGTCCCTTTCCCAGGTTAGGGTGATTTCAGCAGGG	+
Preference number: 5 (lower is better) Translates to: PSPVGMVSVTSMSRV*LLLSLSQVRVISAG Trigger: CCCTGCTGAAATCACCCTAACCTGGGAAAGGGACAAAAGCAATCAAACCCTGGACATGGAGGTCACGGAGACCATGCCTACAGGGGATGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041964.7
CDS GCA 90 bp	TGTGTTATCCTTCCAATACTCTGGCTTCTTTTGATCTTTCCATGGTaGACAGTGCTCTGTCCTCTGAACATCTCTTCTGCTGTTGAATCT	+
Preference number: 5 (lower is better) Translates to: CVILPILWLLLIFPW*TVLCPLNISSAVES Trigger: AGATTCAACAGCAGAAGAGATGTTCAGAGGACAGAGCACTGTGCACCATGGAAAGATCAAAAGAAGCCAGAGTATTGGAAGGATAACACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041964.7
CDS TCA 90 bp	GGATATCTGTTCTCAGCAAAATCTCCTTTCCATATTCCAGCTCTGTaGGGAATAAGTCCACACATTCAACCTCCAGGAAATTCTTCACAT	+
Preference number: 5 (lower is better) Translates to: GYLFSAKSPFHIPAL*GISPHIQPPGNSSH Trigger: ATGTGAAGAATTTCCTGGAGGTTGAATGTGTGGACTTATTCCTCACAGAGCTGGAATATGGAAAGGAGATTTTGCTGAGAACAGATATCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041964.7
CDS TCA 72 bp	GTAGGCATGGTCTCCGTGACCTCCATGTCCAGGGTTTaGTTGCTTTTGTCCCTTTCCCAGGTTAGGGTGATT	+
Preference number: 6 (lower is better) Translates to: VGMVSVTSMSRV*LLLSLSQVRVI Trigger: AATCACCCTAACCTGGGAAAGGGACAAAAGCAATCAAACCCTGGACATGGAGGTCACGGAGACCATGCCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041964.7
CDS CAA 72 bp	GATGAGTCCCACTCTTCTCTGAGAATCTCTGCAAACTaGCCCACTGGGGTCCAAGTGCTTAGGTCCTCATTC	+
Preference number: 6 (lower is better) Translates to: DESHSSLRISAN*PTGVQVLRSSF Trigger: GAATGAGGACCTAAGCACTTGGACCCCAGTGGGCAAGTTTGCAGAGATTCTCAGAGAAGAGTGGGACTCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041964.7
CDS CCA 72 bp	GCTCAGAACGAGGTCTGTGTTATCCTTCCAATACTCTaGCTTCTTTTGATCTTTCCATGGTGCACAGTGCTC	+
Preference number: 6 (lower is better) Translates to: AQNEVCVILPIL*LLLIFPWCTVL Trigger: GAGCACTGTGCACCATGGAAAGATCAAAAGAAGCCAGAGTATTGGAAGGATAACACAGACCTCGTTCTGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041964.7
CDS CAA 72 bp	GAGGTCTGTGTTATCCTTCCAATACTCTGGCTTCTTTaGATCTTTCCATGGTGCACAGTGCTCTGTCCTCTG	+
Preference number: 6 (lower is better) Translates to: EVCVILPILWLL*IFPWCTVLCPL Trigger: CAGAGGACAGAGCACTGTGCACCATGGAAAGATCAAAAGAAGCCAGAGTATTGGAAGGATAACACAGACCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041964.7
CDS CAA 90 bp	GTCCAAGTGCTTAGGTCCTCATTCAGCCTGATGGAATCATGGTCATaGAAGACTACTTCAAAGAATCCGTTTCTGAAATACCCTCGAGGC	+
Preference number: 6 (lower is better) Translates to: VQVLRSSFSLMESWS*KTTSKNPFLKYPRG Trigger: GCCTCGAGGGTATTTCAGAAACGGATTCTTTGAAGTAGTCTTCAATGACCATGATTCCATCAGGCTGAATGAGGACCTAAGCACTTGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041964.7
CDS CCA 72 bp	AACTGTATATCATCCACAAAACCAACACTGATGAATTaGGGCTTAGGCATCCAGGGCAAGGTGAAGAGAGTT	+
Preference number: 6 (lower is better) Translates to: NCISSTKPTLMN*GLGIQGKVKRV Trigger: AACTCTCTTCACCTTGCCCTGGATGCCTAAGCCCCAATTCATCAGTGTTGGTTTTGTGGATGATATACAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041964.7
CDS CCA 72 bp	CAAGTGCTTAGGTCCTCATTCAGCCTGATGGAATCATaGTCATTGAAGACTACTTCAAAGAATCCGTTTCTG	+
Preference number: 6 (lower is better) Translates to: QVLRSSFSLMES*SLKTTSKNPFL Trigger: CAGAAACGGATTCTTTGAAGTAGTCTTCAATGACCATGATTCCATCAGGCTGAATGAGGACCTAAGCACTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041964.7
CDS CAA 72 bp	CTTAGGTCCTCATTCAGCCTGATGGAATCATGGTCATaGAAGACTACTTCAAAGAATCCGTTTCTGAAATAC	+
Preference number: 6 (lower is better) Translates to: LRSSFSLMESWS*KTTSKNPFLKY Trigger: GTATTTCAGAAACGGATTCTTTGAAGTAGTCTTCAATGACCATGATTCCATCAGGCTGAATGAGGACCTAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041964.7
CDS TCA 72 bp	TTGTGTGATATCCAGTTAGACTGTAGTTGTAGATTTTaGGCATCCTTTGCAGTATCTCTGTTAAATCCTGAA	+
Preference number: 6 (lower is better) Translates to: LCDIQLDCSCRF*ASFAVSLLNPE Trigger: TTCAGGATTTAACAGAGATACTGCAAAGGATGCTCAAAATCTACAACTACAGTCTAACTGGATATCACACAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041964.7