Pregenerated sensors for H2-M10.5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037246Ensembl transcript IDs: ENSMUST00000041531.7
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTGAAGGTCAGTTTCTGATGTCAGTCTCCCAGACCTGCCTCTCCTaGCAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTGAAAGA | + |
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Preference number: 1 (lower is better) Translates to: TEGQFLMSVSQTCLS*QETETWTQVSAIER Trigger: TCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGAGGCAGGTCTGGGAGACTGACATCAGAAACTGACCTTCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR TCA 90 bp | CCTCTCCTGACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTaGAAGAAAAGTCAGGAGCTTTTGAAGTCACAGAAGATTGCATCT | + |
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Preference number: 1 (lower is better) Translates to: PLLTGDRDLDTGVSH*KKSQELLKSQKIAS Trigger: AGATGCAATCTTCTGTGACTTCAAAAGCTCCTGACTTTTCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR TCA 90 bp | TGGAGAAATAAATTTACAGCTCACTGGAAACTGAAGGTCAGTTTCTaGTGTCAGTCTCCCAGACCTGCCTCTCCTGACAGGAGACAGAGA | + |
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Preference number: 1 (lower is better) Translates to: WRNKFTAHWKLKVSF*CQSPRPASPDRRQR Trigger: TCTCTGTCTCCTGTCAGGAGAGGCAGGTCTGGGAGACTGACATCAGAAACTGACCTTCAGTTTCCAGTGAGCTGTAAATTTATTTCTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR TCA 90 bp | CCTCTTGTTAAACTTGGAGAAATAAATTTACAGCTCACTGGAAACTaGAGGTCAGTTTCTGATGTCAGTCTCCCAGACCTGCCTCTCCTG | + |
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Preference number: 1 (lower is better) Translates to: PLVKLGEINLQLTGN*RSVSDVSLPDLPLL Trigger: CAGGAGAGGCAGGTCTGGGAGACTGACATCAGAAACTGACCTTCAGTTTCCAGTGAGCTGTAAATTTATTTCTCCAAGTTTAACAAGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR TCA 90 bp | TTGAAGAGAAAGAATGGCACTCAGAAAAAGATAGAGAAGACCCAATaGATGGATTTCAACTTCTCAAGACAGATTTGCTATGTTATTCGT | + |
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Preference number: 1 (lower is better) Translates to: LKRKNGTQKKIEKTQ*MDFNFSRQICYVIR Trigger: ACGAATAACATAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGGTCTTCTCTATCTTTTTCTGAGTGCCATTCTTTCTCTTCAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR CAA 90 bp | GCCTCTCCTGACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATaGAAAGAAAAGTCAGGAGCTTTTGAAGTCACAGAAGATTGCATC | + |
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Preference number: 2 (lower is better) Translates to: ASPDRRQRPGHRCQP*KEKSGAFEVTEDCI Trigger: GATGCAATCTTCTGTGACTTCAAAAGCTCCTGACTTTTCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR-3UTR TCA 90 bp | AGAGAAGACCCAATGAATGGATTTCAACTTCTCAAGACAGATTTGCTATGTTATCAGCTCACTGGAAACTaGAGGTCAGTTTCTGATGTC | + |
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Preference number: 2 (lower is better) Translates to: REDPMNGFQLLKTDLLCYQLTGN*RSVSDV Trigger: GACATCAGAAACTGACCTTCAGTTTCCAGTGAGCTG...ATAACATAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGGTCTTCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR-3UTR TCA 90 bp | CCCAATGAATGGATTTCAACTTCTCAAGACAGATTTGCTATGTTATTCGTCTTGAAAGTCAGGAGCTTTTaGAGTCACAGAAGATTGCAT | + |
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Preference number: 2 (lower is better) Translates to: PNEWISTSQDRFAMLFVLKVRSF*SHRRLH Trigger: ATGCAATCTTCTGTGACTTCAAAAGCTCCTGACTTT...CAAGACGAATAACATAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR-3UTR CCA 90 bp | CCCAATGAATGGATTTCAACTTCTCAAGACAGATTTGCTATGTTATTCGTCTTGAAATTTACAGCTCACTaGAAACTGAAGGTCAGTTTC | + |
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Preference number: 2 (lower is better) Translates to: PNEWISTSQDRFAMLFVLKFTAH*KLKVSF Trigger: GAAACTGACCTTCAGTTTCCAGTGAGCTGTAAATTT...CAAGACGAATAACATAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR TCA 72 bp | CAGTTTCTGATGTCAGTCTCCCAGACCTGCCTCTCCTaGCAGGAGACAGAGACCTGGACACAGGTGTCAGCC | + |
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Preference number: 3 (lower is better) Translates to: QFLMSVSQTCLS*QETETWTQVSA Trigger: GGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGAGGCAGGTCTGGGAGACTGACATCAGAAACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR TCA 72 bp | AAATTTACAGCTCACTGGAAACTGAAGGTCAGTTTCTaGTGTCAGTCTCCCAGACCTGCCTCTCCTGACAGG | + |
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Preference number: 3 (lower is better) Translates to: KFTAHWKLKVSF*CQSPRPASPDR Trigger: CCTGTCAGGAGAGGCAGGTCTGGGAGACTGACATCAGAAACTGACCTTCAGTTTCCAGTGAGCTGTAAATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR TCA 72 bp | ACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTaGAAGAAAAGTCAGGAGCTTTTGAAGTCACAGAAG | + |
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Preference number: 3 (lower is better) Translates to: TGDRDLDTGVSH*KKSQELLKSQK Trigger: CTTCTGTGACTTCAAAAGCTCCTGACTTTTCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR-3UTR CAA 90 bp | AAAGATAGAGAAGACCCAATGAATGGATTTCAACTTCTCAAGACAGATTTGCTACACAGGTGTCAGCCATaGAAAGAAAAGTCAGGAGCT | + |
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Preference number: 3 (lower is better) Translates to: KDREDPMNGFQLLKTDLLHRCQP*KEKSGA Trigger: AGCTCCTGACTTTTCTTTCAATGGCTGACACCTGTG...TAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGGTCTTCTCTATCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR TCA 72 bp | TCTCAAGACAGATTTGCTATGTTATTCGTCTTGCTTTaGTTGGGTTTACTCATTAAATACACCATGAGAAGA | + |
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Preference number: 3 (lower is better) Translates to: SQDRFAMLFVLL*LGLLIKYTMRR Trigger: TCTTCTCATGGTGTATTTAATGAGTAAACCCAATCAAAGCAAGACGAATAACATAGCAAATCTGTCTTGAGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR GCA 90 bp | AGACCTGCCTCTCCTGACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTGATCGGAGCGCAGCAATaGTTCCTTTCCAAGGACCAT | + |
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Preference number: 4 (lower is better) Translates to: RPASPDRRQRPGHRCQPLIGAQQ*FLSKDH Trigger: ATGGTCCTTGGAAAGGAAGCATTGCTGCGCTCCGAT...CAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGAGGCAGGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR TCA 90 bp | TCTCCTGACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTGAAAGAAAAGCCCAGCACCTCAGGGTaGCATTCCCTTCAGGTCTTA | + |
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Preference number: 4 (lower is better) Translates to: SPDRRQRPGHRCQPLKEKPSTSG*HSLQVL Trigger: TAAGACCTGAAGGGAATGTCACCCTGAGGTGCTGGG...CTTTTCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR CCA 90 bp | GCCTCTCCTGACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTGAAAGAAGGTCCAATATGTCATTaGCACCTGCTCCATCCATGC | + |
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Preference number: 4 (lower is better) Translates to: ASPDRRQRPGHRCQPLKEGPICH*HLLHPC Trigger: GCATGGATGGAGCAGGTGCCAATGACATATTGGACC...TTCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR CCA 90 bp | TCTCCTGACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTGAAAGAAAAGGGCAGCTCCATGTCTTaGGTGTGGTTGTTCCCATCC | + |
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Preference number: 4 (lower is better) Translates to: SPDRRQRPGHRCQPLKEKGSSMS*VWLFPS Trigger: GGATGGGAACAACCACACCCAAGACATGGAGCTGCC...CTTTTCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR CCA 90 bp | TCTCCTGACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTGAAAGAAAAGTCCATGTCTTGGGTGTaGTTGTTCCCATCCCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: SPDRRQRPGHRCQPLKEKSMSWV*LFPSLF Trigger: GAAGAGGGATGGGAACAACCACACCCAAGACATGGA...CTTTTCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR GCA 90 bp | GCCTCTCCTGACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTGAAAGAACTGCAATTGGTTCTTTaGTGTCATATCTCTGATACT | + |
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Preference number: 4 (lower is better) Translates to: ASPDRRQRPGHRCQPLKELQLVL*CHISDT Trigger: AGTATCAGAGATATGACAGCAAAGAACCAATTGCAG...TTCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| 3UTR CAA 72 bp | GACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATaGAAAGAAAAGTCAGGAGCTTTTGAAGTCACAGAA | + |
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Preference number: 4 (lower is better) Translates to: DRRQRPGHRCQP*KEKSGAFEVTE Trigger: TTCTGTGACTTCAAAAGCTCCTGACTTTTCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR GCA 90 bp | CCATTGAAAGAAAAGTCAGGAGCTTTTGAAGTCACAGAAGATTGCATCTCATACACAGCGTTGAAAGTCTaGAGCCAGTGTGAGCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: PLKEKSGAFEVTEDCISYTALKV*SQCEPA Trigger: TGCAGGCTCACACTGGCTGCAGACTTTCAACGCTGT...GTATGAGATGCAATCTTCTGTGACTTCAAAAGCTCCTGACTTTTCTTTCAATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR CCA 90 bp | CCATTGAAAGAAAAGTCAGGAGCTTTTGAAGTCACAGAAGATTGCATCTCATACGATGGGGATGGTGTGTaGAGGCTCCCATTTCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: PLKEKSGAFEVTEDCISYDGDGV*RLPFQL Trigger: AAGCTGAAATGGGAGCCTCCACACACCATCCCCATC...GTATGAGATGCAATCTTCTGTGACTTCAAAAGCTCCTGACTTTTCTTTCAATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR TCA 90 bp | CCCAATGAATGGATTTCAACTTCTCAAGACAGATTTGCTATGTTATTCGTCTTGAGTCTGCAGCCAGTGTaGGCCTGCACAATACTGGAT | + |
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Preference number: 4 (lower is better) Translates to: PNEWISTSQDRFAMLFVLSLQPV*ACTILD Trigger: ATCCAGTATTGTGCAGGCTCACACTGGCTGCAGACT...CAAGACGAATAACATAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR CCA 90 bp | AGAGAAGACCCAATGAATGGATTTCAACTTCTCAAGACAGATTTGCTATGTTATACTGGATCAGGTCCATaGCCACCAAGAGGAGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: REDPMNGFQLLKTDLLCYTGSGP*PPRGGG Trigger: TCCTCCTCCTCTTGGTGGCCATGGACCTGATCCAGT...ATAACATAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGGTCTTCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR TCA 90 bp | AAAGATAGAGAAGACCCAATGAATGGATTTCAACTTCTCAAGACAGATTTGCTACCAAAATCACAGCGTTaGAAGTCTGCAGCCAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: KDREDPMNGFQLLKTDLLPKSQR*KSAASV Trigger: CACACTGGCTGCAGACTTTCAACGCTGTGATTTTGG...TAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGGTCTTCTCTATCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR GCA 90 bp | AAAGATAGAGAAGACCCAATGAATGGATTTCAACTTCTCAAGACAGATTTGCTACTTCACCGTCCCACCTaGTCTTCACATATTCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: KDREDPMNGFQLLKTDLLLHRPT*SSHIQL Trigger: CAGCTGAATATGTGAAGAGCAGGTGGGACGGTGAAG...TAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGGTCTTCTCTATCTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR GCA 90 bp | AAAGATAGAGAAGACCCAATGAATGGATTTCAACTTCTCAAGACAGATTTGCTAAGTCTTCCACCTTTCTaGATCACCTTCACCGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: KDREDPMNGFQLLKTDLLSLPPF*ITFTVP Trigger: TGGGACGGTGAAGGTGATGCAGAAAGGTGGAAGACT...TAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGGTCTTCTCTATCTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR CCA 90 bp | AGAGAAGACCCAATGAATGGATTTCAACTTCTCAAGACAGATTTGCTATGTTATCCCTCTTCCAAGTCATaGTTATGTCAGCTGGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: REDPMNGFQLLKTDLLCYPSSKS*LCQLGR Trigger: TCTACCCAGCTGACATAACCATGACTTGGAAGAGGG...ATAACATAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGGTCTTCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR TCA 90 bp | AGAGAAGACCCAATGAATGGATTTCAACTTCTCAAGACAGATTTGCTATGTTATTTGTTCACCATGAAGTaGAGAATTCGTCTGTCTAGC | + |
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Preference number: 4 (lower is better) Translates to: REDPMNGFQLLKTDLLCYLFTMK*RIRLSS Trigger: GCTAGACAGACGAATTCTTCACTTCATGGTGAACAA...ATAACATAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGGTCTTCTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS CCA 90 bp | AAGTCTGCAGCCAGTGTGAGCCTGCACAATACTGGATCAGGTCCATaGCCACCAAGAGGAGGAGGAGTGTGCAGCATCCAGGGTTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: KSAASVSLHNTGSGP*PPRGGGVCSIQGSS Trigger: TGAGGAACCCTGGATGCTGCACACTCCTCCTCCTCTTGGTGGCCATGGACCTGATCCAGTATTGTGCAGGCTCACACTGGCTGCAGACTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR CAA 90 bp | AGACCTGCCTCTCCTGACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTGTGGCAGCTCCATGTCTaGGGTGTGGTTGTTCCCATC | + |
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Preference number: 5 (lower is better) Translates to: RPASPDRRQRPGHRCQPLWQLHV*GVVVPI Trigger: GATGGGAACAACCACACCCAAGACATGGAGCTGCCA...CAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGAGGCAGGTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS CCA 90 bp | ATCACAGCGTTGAAAGTCTGCAGCCAGTGTGAGCCTGCACAATACTaGATCAGGTCCATGGCCACCAAGAGGAGGAGGAGTGTGCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: ITALKVCSQCEPAQY*IRSMATKRRRSVQH Trigger: ATGCTGCACACTCCTCCTCCTCTTGGTGGCCATGGACCTGATCCAGTATTGTGCAGGCTCACACTGGCTGCAGACTTTCAACGCTGTGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS GCA 90 bp | CGGGAATTAACCATGCCAGGCTCCAAAATCACAGCGTTGAAAGTCTaGAGCCAGTGTGAGCCTGCACAATACTGGATCAGGTCCATGGCC | + |
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Preference number: 5 (lower is better) Translates to: RELTMPGSKITALKV*SQCEPAQYWIRSMA Trigger: GGCCATGGACCTGATCCAGTATTGTGCAGGCTCACACTGGCTGCAGACTTTCAACGCTGTGATTTTGGAGCCTGGCATGGTTAATTCCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS GCA 90 bp | AAGCCTTTCCACGCACACTCCTTGCAGGTAAGTCTTCCACCTTTCTaGATCACCTTCACCGTCCCACCTGCTCTTCACATATTCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: KPFHAHSLQVSLPPF*ITFTVPPALHIFSC Trigger: GCAGCTGAATATGTGAAGAGCAGGTGGGACGGTGAAGGTGATGCAGAAAGGTGGAAGACTTACCTGCAAGGAGTGTGCGTGGAAAGGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS GCA 90 bp | CACAGTTCCCACCACCAAAGTTCCAAGAACCAGGCCGATGAGAATTaGTATGATGGGGATGGTGTGTGGAGGCTCCCATTTCAGCTTGAG | + |
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Preference number: 5 (lower is better) Translates to: HSSHHQSSKNQADEN*YDGDGVWRLPFQLE Trigger: CTCAAGCTGAAATGGGAGCCTCCACACACCATCCCCATCATAGCAATTCTCATCGGCCTGGTTCTTGGAACTTTGGTGGTGGGAACTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR CAA 90 bp | GCCTCTCCTGACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTGAAAGAATCCAAAATCACAGCGTaGAAAGTCTGCAGCCAGTGT | + |
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Preference number: 5 (lower is better) Translates to: ASPDRRQRPGHRCQPLKESKITA*KVCSQC Trigger: ACACTGGCTGCAGACTTTCAACGCTGTGATTTTGGA...TTCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS GCA 90 bp | TTCTGCATCACCTTCACCGTCCCACCTGCTCTTCACATATTCAGCTaGGTTTCCATGTGCAATCCAGGAGCTCAGGTTCTCATTCAGGTA | + |
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Preference number: 5 (lower is better) Translates to: FCITFTVPPALHIFS*VSMCNPGAQVLIQV Trigger: TACCTGAATGAGAACCTGAGCTCCTGGATTGCACATGGAAACGCAGCTGAATATGTGAAGAGCAGGTGGGACGGTGAAGGTGATGCAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS TCA 90 bp | GCAGGGTGTGATAATCGTCCATTCTTTGTTCATTTTTGTTCACCATaGAGTGAAGAATTCGTCTGTCTAGCTGTGACAATTCCGCAACGC | + |
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Preference number: 5 (lower is better) Translates to: AGCDNRPFFVHFCSP*SEEFVCLAVTIPQR Trigger: GCGTTGCGGAATTGTCACAGCTAGACAGACGAATTCTTCACTTCATGGTGAACAAAAATGAACAAAGAATGGACGATTATCACACCCTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR CAA 90 bp | CCATTGAAAGAAAAGTCAGGAGCTTTTGAAGTCACAGAAGATTGCATCTCATACTGGTCCAATATGTCATaGGCACCTGCTCCATCCATG | + |
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Preference number: 5 (lower is better) Translates to: PLKEKSGAFEVTEDCISYWSNMS*APAPSM Trigger: CATGGATGGAGCAGGTGCCAATGACATATTGGACCA...GTATGAGATGCAATCTTCTGTGACTTCAAAAGCTCCTGACTTTTCTTTCAATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS-3UTR CAA 90 bp | CCCAATGAATGGATTTCAACTTCTCAAGACAGATTTGCTATGTTATTCGTCTTGTTCCACGCACACTCCTaGCAGGTAAGTCTTCCACCT | + |
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Preference number: 5 (lower is better) Translates to: PNEWISTSQDRFAMLFVLFHAHS*QVSLPP Trigger: AGGTGGAAGACTTACCTGCAAGGAGTGTGCGTGGAA...CAAGACGAATAACATAGCAAATCTGTCTTGAGAAGTTGAAATCCATTCATTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS CCA 72 bp | GCCAGTGTGAGCCTGCACAATACTGGATCAGGTCCATaGCCACCAAGAGGAGGAGGAGTGTGCAGCATCCAG | + |
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Preference number: 6 (lower is better) Translates to: ASVSLHNTGSGP*PPRGGGVCSIQ Trigger: CTGGATGCTGCACACTCCTCCTCCTCTTGGTGGCCATGGACCTGATCCAGTATTGTGCAGGCTCACACTGGC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS CCA 72 bp | TTGAAAGTCTGCAGCCAGTGTGAGCCTGCACAATACTaGATCAGGTCCATGGCCACCAAGAGGAGGAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: LKVCSQCEPAQY*IRSMATKRRRS Trigger: ACTCCTCCTCCTCTTGGTGGCCATGGACCTGATCCAGTATTGTGCAGGCTCACACTGGCTGCAGACTTTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS GCA 72 bp | ACCTTCACCGTCCCACCTGCTCTTCACATATTCAGCTaGGTTTCCATGTGCAATCCAGGAGCTCAGGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: TFTVPPALHIFS*VSMCNPGAQVL Trigger: GAGAACCTGAGCTCCTGGATTGCACATGGAAACGCAGCTGAATATGTGAAGAGCAGGTGGGACGGTGAAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS GCA 72 bp | CACGCACACTCCTTGCAGGTAAGTCTTCCACCTTTCTaGATCACCTTCACCGTCCCACCTGCTCTTCACATA | + |
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Preference number: 6 (lower is better) Translates to: HAHSLQVSLPPF*ITFTVPPALHI Trigger: TATGTGAAGAGCAGGTGGGACGGTGAAGGTGATGCAGAAAGGTGGAAGACTTACCTGCAAGGAGTGTGCGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS CAA 90 bp | TGGACGAACCGGGAATTAACCATGCCAGGCTCCAAAATCACAGCGTaGAAAGTCTGCAGCCAGTGTGAGCCTGCACAATACTGGATCAGG | + |
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Preference number: 6 (lower is better) Translates to: WTNRELTMPGSKITA*KVCSQCEPAQYWIR Trigger: CCTGATCCAGTATTGTGCAGGCTCACACTGGCTGCAGACTTTCAACGCTGTGATTTTGGAGCCTGGCATGGTTAATTCCCGGTTCGTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS GCA 72 bp | CACCACCAAAGTTCCAAGAACCAGGCCGATGAGAATTaGTATGATGGGGATGGTGTGTGGAGGCTCCCATTT | + |
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Preference number: 6 (lower is better) Translates to: HHQSSKNQADEN*YDGDGVWRLPF Trigger: AAATGGGAGCCTCCACACACCATCCCCATCATAGCAATTCTCATCGGCCTGGTTCTTGGAACTTTGGTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS TCA 72 bp | TCTCATTCAGGTATAAGTCATCATAGCCATAGTAGGTaGGCCGGAAGTGACCGCCGAGGAAGCTCCCATCAT | + |
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Preference number: 6 (lower is better) Translates to: SHSGISHHSHSR*AGSDRRGSSHH Trigger: ATGATGGGAGCTTCCTCGGCGGTCACTTCCGGCTCACCTACTATGGCTATGATGACTTATACCTGAATGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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| CDS TCA 72 bp | GATAATCGTCCATTCTTTGTTCATTTTTGTTCACCATaGAGTGAAGAATTCGTCTGTCTAGCTGTGACAATT | + |
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Preference number: 6 (lower is better) Translates to: DNRPFFVHFCSP*SEEFVCLAVTI Trigger: AATTGTCACAGCTAGACAGACGAATTCTTCACTTCATGGTGAACAAAAATGAACAAAGAATGGACGATTATC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041531.7 |
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