Pregenerated sensors for H2-M10.4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048231Ensembl transcript IDs: ENSMUST00000057502.14, ENSMUST00000169950.2
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGGAGAAGACACAGGTCAGTGTGGAGGGGAGTCATGCTCAGGTCTaGGCTGAACTCACTTTCTCATGTTGTACTTACAGGAAACAGAGA | + |
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Preference number: 1 (lower is better) Translates to: LEKTQVSVEGSHAQV*AELTFSCCTYRKQR Trigger: TCTCTGTTTCCTGTAAGTACAACATGAGAAAGTGAGTTCAGCCCAGACCTGAGCATGACTCCCCTCCACACTGACCTGTGTCTTCTCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| 3UTR CCA 90 bp | AAGAATAAATTTACAACTCACTGGAAACTAAAAGTCAATTTCTCATaGAGGTCTCCCAGGCCTGCCTCTCCTGGAGCAGGTGAGATGACT | + |
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Preference number: 1 (lower is better) Translates to: KNKFTTHWKLKVNFS*RSPRPASPGAGEMT Trigger: AGTCATCTCACCTGCTCCAGGAGAGGCAGGCCTGGGAGACCTCCATGAGAAATTGACTTTTAGTTTCCAGTGAGTTGTAAATTTATTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| 3UTR-3UTR TCA 90 bp | TGGAAACTAAAAGTCAATTTCTCATGGAGGTCTCCCAGGCCTGCCTCTCCTGGATGCTCAGGTCTGGGCTaGACTCACTTTCTCATGTTG | + |
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Preference number: 2 (lower is better) Translates to: WKLKVNFSWRSPRPASPGCSGLG*THFLML Trigger: CAACATGAGAAAGTGAGTTCAGCCCAGACCTGAGCA...TCCAGGAGAGGCAGGCCTGGGAGACCTCCATGAGAAATTGACTTTTAGTTTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| 3UTR-3UTR CAA 90 bp | GGTGAGATGACTGGAGAAGACACAGGTCAGTGTGGAGGGGAGTCATGCTCAGGTACTCACTTTCTCATGTaGTACTTACAGGAAACAGAG | + |
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Preference number: 3 (lower is better) Translates to: GEMTGEDTGQCGGESCSGTHFLM*YLQETE Trigger: CTCTGTTTCCTGTAAGTACAACATGAGAAAGTGAGT...ACCTGAGCATGACTCCCCTCCACACTGACCTGTGTCTTCTCCAGTCATCTCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS-3UTR CCA 90 bp | ATGACTGGAGAAGACACAGGTCAGTGTGGAGGGGAGTCATGCTCAGGTCTGGGCCAGGGTGATGTCAGCTaGGTAGAAACCCAGAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: MTGEDTGQCGGESCSGLGQGDVS*VETQSP Trigger: TGGGCTCTGGGTTTCTACCCAGCTGACATCACCCTG...GCCCAGACCTGAGCATGACTCCCCTCCACACTGACCTGTGTCTTCTCCAGTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS-3UTR TCA 90 bp | GGTGAGATGACTGGAGAAGACACAGGTCAGTGTGGAGGGGAGTCATGCTCAGGTCCCAGCACCTCAGGGTaGCATTCCCTTCAGGTGTTA | + |
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Preference number: 4 (lower is better) Translates to: GEMTGEDTGQCGGESCSGPSTSG*HSLQVL Trigger: TAACACCTGAAGGGAATGTCACCCTGAGGTGCTGGG...ACCTGAGCATGACTCCCCTCCACACTGACCTGTGTCTTCTCCAGTCATCTCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS-3UTR GCA 90 bp | GGTGAGATGACTGGAGAAGACACAGGTCAGTGTGGAGGGGAGTCATGCTCAGGTTATTCAGGTGGCTCCTaGTTCATCCAAGCAGCCCGA | + |
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Preference number: 4 (lower is better) Translates to: GEMTGEDTGQCGGESCSGYSGGS*FIQAAR Trigger: TCGGGCTGCTTGGATGAAGCAGGAGCCACCTGAATA...ACCTGAGCATGACTCCCCTCCACACTGACCTGTGTCTTCTCCAGTCATCTCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS-3UTR TCA 90 bp | TGGAAACTAAAAGTCAATTTCTCATGGAGGTCTCCCAGGCCTGCCTCTCCTGGAGCCCCCATTTCAGAGTaGGTGGCCCAGGTAACCCTT | + |
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Preference number: 4 (lower is better) Translates to: WKLKVNFSWRSPRPASPGAPISE*VAQVTL Trigger: AAGGGTTACCTGGGCCACTCACTCTGAAATGGGGGC...TCCAGGAGAGGCAGGCCTGGGAGACCTCCATGAGAAATTGACTTTTAGTTTCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS-3UTR GCA 90 bp | ATGACTGGAGAAGACACAGGTCAGTGTGGAGGGGAGTCATGCTCAGGTCTGGGCCATCATGTGCCACATTaGAGCCAAACACTTCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: MTGEDTGQCGGESCSGLGHHVPH*SQTLPA Trigger: TGCAGGAAGTGTTTGGCTGCAATGTGGCACATGATG...GCCCAGACCTGAGCATGACTCCCCTCCACACTGACCTGTGTCTTCTCCAGTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS-3UTR GCA 90 bp | ATGACTGGAGAAGACACAGGTCAGTGTGGAGGGGAGTCATGCTCAGGTCTGGGCCAGGCCGATGAGAATTaGTATGATGGGGATGGTTTG | + |
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Preference number: 4 (lower is better) Translates to: MTGEDTGQCGGESCSGLGQADEN*YDGDGL Trigger: CAAACCATCCCCATCATAGCAATTCTCATCGGCCTG...GCCCAGACCTGAGCATGACTCCCCTCCACACTGACCTGTGTCTTCTCCAGTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS-3UTR CCA 90 bp | GGTGAGATGACTGGAGAAGACACAGGTCAGTGTGGAGGGGAGTCATGCTCAGGTTCAGGTGTTACTTTGTaGGTCACATGTGTTCGGGGG | + |
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Preference number: 4 (lower is better) Translates to: GEMTGEDTGQCGGESCSGSGVTL*VTCVRG Trigger: CCCCCGAACACATGTGACCCACAAAGTAACACCTGA...ACCTGAGCATGACTCCCCTCCACACTGACCTGTGTCTTCTCCAGTCATCTCACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS-3UTR TCA 90 bp | TGGAAACTAAAAGTCAATTTCTCATGGAGGTCTCCCAGGCCTGCCTCTCCTGGATCTTCCAGGTCAGGGTaGTGTCAGCTGGGTAGAAAC | + |
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Preference number: 4 (lower is better) Translates to: WKLKVNFSWRSPRPASPGSSRSG*CQLGRN Trigger: GTTTCTACCCAGCTGACATCACCCTGACCTGGAAGA...TCCAGGAGAGGCAGGCCTGGGAGACCTCCATGAGAAATTGACTTTTAGTTTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS-3UTR TCA 90 bp | GGTGAGATGACTGGAGAAGACACAGGTCAGTGTGGAGGGGAGTCATGCTCAGGTGGTCCTCATTCAGGATaGTGTAATCATAGCCATAGT | + |
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Preference number: 4 (lower is better) Translates to: GEMTGEDTGQCGGESCSGGPHSG*CNHSHS Trigger: ACTATGGCTATGATTACATCATCCTGAATGAGGACC...ACCTGAGCATGACTCCCCTCCACACTGACCTGTGTCTTCTCCAGTCATCTCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS-3UTR CCA 90 bp | TGGAAACTAAAAGTCAATTTCTCATGGAGGTCTCCCAGGCCTGCCTCTCCTGGACTTCCAATATTCAGGTaGCTCCTGCTTCATCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: WKLKVNFSWRSPRPASPGLPIFR*LLLHPS Trigger: GCTTGGATGAAGCAGGAGCCACCTGAATATTGGAAG...TCCAGGAGAGGCAGGCCTGGGAGACCTCCATGAGAAATTGACTTTTAGTTTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS-3UTR CCA 90 bp | TGGAAACTAAAAGTCAATTTCTCATGGAGGTCTCCCAGGCCTGCCTCTCCTGGATCCATGTCCTGGGTGTaGTTTTTCCCATCTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: WKLKVNFSWRSPRPASPGSMSWV*FFPSLF Trigger: GAAGAGAGATGGGAAAAACCACACCCAGGACATGGA...TCCAGGAGAGGCAGGCCTGGGAGACCTCCATGAGAAATTGACTTTTAGTTTCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS-3UTR CAA 90 bp | ATGACTGGAGAAGACACAGGTCAGTGTGGAGGGGAGTCATGCTCAGGTCTGGGCCCATCATGTGCCACATaGCAGCCAAACACTTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: MTGEDTGQCGGESCSGLGPSCAT*QPNTSC Trigger: GCAGGAAGTGTTTGGCTGCAATGTGGCACATGATGG...GCCCAGACCTGAGCATGACTCCCCTCCACACTGACCTGTGTCTTCTCCAGTCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057502.14 |
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| CDS CCA 90 bp | AAGTCTTCAGCCAGTGTGAGCCTTCACAATACTGGGGCCGGTCTATaGTCACCAATAGGAGGCAAAGGATGGCAAAGTGTCCAGGGTTCC | + |
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Preference number: 5 (lower is better) Translates to: KSSASVSLHNTGAGL*SPIGGKGWQSVQGS Trigger: GGAACCCTGGACACTTTGCCATCCTTTGCCTCCTATTGGTGACCATAGACCGGCCCCAGTATTGTGAAGGCTCACACTGGCTGAAGACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057502.14 ENSMUST00000169950.2 |
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| CDS GCA 90 bp | ATAGTAGGTGAGCCCGTAGTGACCACCAAGGAAGCTCCCATCATGTaGCACATTGCAGCCAAACACTTCCTGCAGGGTGTGATAGTCATT | + |
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Preference number: 5 (lower is better) Translates to: IVGEPVVTTKEAPIM*HIAAKHFLQGVIVI Trigger: AATGACTATCACACCCTGCAGGAAGTGTTTGGCTGCAATGTGGCACATGATGGGAGCTTCCTTGGTGGTCACTACGGGCTCACCTACTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057502.14 ENSMUST00000169950.2 |
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| CDS CCA 90 bp | CAGGTAAGTCCTCCAACCTTCTGTCACGCTTCCTTGCGTCCGGTCTaGATTAAATTTTCCACCTACTTTTCCCTCTGTAGTCCAAGAGTT | + |
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Preference number: 5 (lower is better) Translates to: QVSPPTFCHASLRPV*IKFSTYFSLCSPRV Trigger: AACTCTTGGACTACAGAGGGAAAAGTAGGTGGAAAATTTAATCCAGACCGGACGCAAGGAAGCGTGACAGAAGGTTGGAGGACTTACCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057502.14 ENSMUST00000169950.2 |
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| CDS GCA 72 bp | TCAGGTGGCTCCTGCTTCATCCAAGCAGCCCGAGGTTaGATCCCCGCAGTCTCTGATCTGCTGTCGAATCCC | + |
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Preference number: 6 (lower is better) Translates to: SGGSCFIQAARG*IPAVSDLLSNP Trigger: GGGATTCGACAGCAGATCAGAGACTGCGGGGATGCAACCTCGGGCTGCTTGGATGAAGCAGGAGCCACCTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057502.14 ENSMUST00000169950.2 |
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| CDS GCA 72 bp | TGTTCTGTCTCATTCTTCCAATATTCAGGTGGCTCCTaGTTCATCCAAGCAGCCCGAGGTTGCATCCCCGCA | + |
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Preference number: 6 (lower is better) Translates to: CSVSFFQYSGGS*FIQAARGCIPA Trigger: TGCGGGGATGCAACCTCGGGCTGCTTGGATGAAGCAGGAGCCACCTGAATATTGGAAGAATGAGACAGAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057502.14 ENSMUST00000169950.2 |
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| CDS GCA 72 bp | AGTGACCACCAAGGAAGCTCCCATCATGTGCCACATTaGAGCCAAACACTTCCTGCAGGGTGTGATAGTCAT | + |
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Preference number: 6 (lower is better) Translates to: SDHQGSSHHVPH*SQTLPAGCDSH Trigger: ATGACTATCACACCCTGCAGGAAGTGTTTGGCTGCAATGTGGCACATGATGGGAGCTTCCTTGGTGGTCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057502.14 ENSMUST00000169950.2 |
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| CDS GCA 72 bp | CACCACCAAAGCTACAAGAACCAGGCCGATGAGAATTaGTATGATGGGGATGGTTTGTGGAGGCCCCCATTT | + |
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Preference number: 6 (lower is better) Translates to: HHQSYKNQADEN*YDGDGLWRPPF Trigger: AAATGGGGGCCTCCACAAACCATCCCCATCATAGCAATTCTCATCGGCCTGGTTCTTGTAGCTTTGGTGGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057502.14 ENSMUST00000169950.2 |
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| CDS CCA 72 bp | CATGGCATGTTCTGTCTCATTCTTCCAATATTCAGGTaGCTCCTGCTTCATCCAAGCAGCCCGAGGTTGCAT | + |
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Preference number: 6 (lower is better) Translates to: HGMFCLILPIFR*LLLHPSSPRLH Trigger: ATGCAACCTCGGGCTGCTTGGATGAAGCAGGAGCCACCTGAATATTGGAAGAATGAGACAGAACATGCCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057502.14 ENSMUST00000169950.2 |
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| CDS CCA 72 bp | CCTCCAACCTTCTGTCACGCTTCCTTGCGTCCGGTCTaGATTAAATTTTCCACCTACTTTTCCCTCTGTAGT | + |
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Preference number: 6 (lower is better) Translates to: PPTFCHASLRPV*IKFSTYFSLCS Trigger: ACTACAGAGGGAAAAGTAGGTGGAAAATTTAATCCAGACCGGACGCAAGGAAGCGTGACAGAAGGTTGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057502.14 ENSMUST00000169950.2 |
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| CDS CAA 72 bp | TTTCAGGTAAGTCCTCCAACCTTCTGTCACGCTTCCTaGCGTCCGGTCTGGATTAAATTTTCCACCTACTTT | + |
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Preference number: 6 (lower is better) Translates to: FQVSPPTFCHAS*RPVWIKFSTYF Trigger: AAAGTAGGTGGAAAATTTAATCCAGACCGGACGCAAGGAAGCGTGACAGAAGGTTGGAGGACTTACCTGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057502.14 ENSMUST00000169950.2 |
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