Pregenerated sensors for H2-M10.3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058124Ensembl transcript IDs: ENSMUST00000073546.5
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTGAAGGTCAGTTTCTGATGTCCGTCTCCCAGACCTGCCTCTCCTaGCAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTGAAAGA | + |
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Preference number: 1 (lower is better) Translates to: TEGQFLMSVSQTCLS*QETETWTQVSAIER Trigger: TCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGAGGCAGGTCTGGGAGACGGACATCAGAAACTGACCTTCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| 3UTR TCA 90 bp | CCTCTCCTGACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTaGAAGAAAAGTCAGGAGCTTTTGAAGTCACCTAAGATTGCATTT | + |
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Preference number: 1 (lower is better) Translates to: PLLTGDRDLDTGVSH*KKSQELLKSPKIAF Trigger: AAATGCAATCTTAGGTGACTTCAAAAGCTCCTGACTTTTCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| 3UTR TCA 90 bp | TGGAAAAATAAATTTACAGCTCATTGGAAACTGAAGGTCAGTTTCTaGTGTCCGTCTCCCAGACCTGCCTCTCCTGACAGGAGACAGAGA | + |
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Preference number: 1 (lower is better) Translates to: WKNKFTAHWKLKVSF*CPSPRPASPDRRQR Trigger: TCTCTGTCTCCTGTCAGGAGAGGCAGGTCTGGGAGACGGACATCAGAAACTGACCTTCAGTTTCCAATGAGCTGTAAATTTATTTTTCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| 3UTR TCA 90 bp | TTGAAGAGAAAGAATGGCACTCAGAAAAAGATAGAGAAGACCCAATaGCTGGATTTCAACTTCTCAAGACAGAGTTGCTATGTTATTCTT | + |
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Preference number: 1 (lower is better) Translates to: LKRKNGTQKKIEKTQ*LDFNFSRQSCYVIL Trigger: AAGAATAACATAGCAACTCTGTCTTGAGAAGTTGAAATCCAGTCATTGGGTCTTCTCTATCTTTTTCTGAGTGCCATTCTTTCTCTTCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| 3UTR-3UTR TCA 90 bp | AGAGAAGACCCAATGACTGGATTTCAACTTCTCAAGACAGAGTTGCTATGTTATCAGACCTGCCTCTCCTaGCAGGAGACAGAGACCTGG | + |
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Preference number: 2 (lower is better) Translates to: REDPMTGFQLLKTELLCYQTCLS*QETETW Trigger: CCAGGTCTCTGTCTCCTGTCAGGAGAGGCAGGTCTG...ATAACATAGCAACTCTGTCTTGAGAAGTTGAAATCCAGTCATTGGGTCTTCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| 3UTR CAA 90 bp | GACTGGATTTCAACTTCTCAAGACAGAGTTGCTATGTTATTCTTCTaGCTTTCATTGGGTTTACTCATTAAATACACCATAGGAAGAAGT | + |
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Preference number: 2 (lower is better) Translates to: DWISTSQDRVAMLFF*LSLGLLIKYTIGRS Trigger: ACTTCTTCCTATGGTGTATTTAATGAGTAAACCCAATGAAAGCAAGAAGAATAACATAGCAACTCTGTCTTGAGAAGTTGAAATCCAGTC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| 3UTR CAA 90 bp | GATAGAGAAGACCCAATGACTGGATTTCAACTTCTCAAGACAGAGTaGCTATGTTATTCTTCTTGCTTTCATTGGGTTTACTCATTAAAT | + |
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Preference number: 2 (lower is better) Translates to: DREDPMTGFQLLKTE*LCYSSCFHWVYSLN Trigger: ATTTAATGAGTAAACCCAATGAAAGCAAGAAGAATAACATAGCAACTCTGTCTTGAGAAGTTGAAATCCAGTCATTGGGTCTTCTCTATC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| 3UTR TCA 72 bp | CAGTTTCTGATGTCCGTCTCCCAGACCTGCCTCTCCTaGCAGGAGACAGAGACCTGGACACAGGTGTCAGCC | + |
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Preference number: 3 (lower is better) Translates to: QFLMSVSQTCLS*QETETWTQVSA Trigger: GGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGTCAGGAGAGGCAGGTCTGGGAGACGGACATCAGAAACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| 3UTR TCA 72 bp | AAATTTACAGCTCATTGGAAACTGAAGGTCAGTTTCTaGTGTCCGTCTCCCAGACCTGCCTCTCCTGACAGG | + |
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Preference number: 3 (lower is better) Translates to: KFTAHWKLKVSF*CPSPRPASPDR Trigger: CCTGTCAGGAGAGGCAGGTCTGGGAGACGGACATCAGAAACTGACCTTCAGTTTCCAATGAGCTGTAAATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| 3UTR CCA 72 bp | ATTTCCTACCTTACTAGGAGAGATGCATCAGATCTCTaGGCACTGTCCATGCCTATGGCAGTACAGCATCAG | + |
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Preference number: 3 (lower is better) Translates to: ISYLTRRDASDL*ALSMPMAVQHQ Trigger: CTGATGCTGTACTGCCATAGGCATGGACAGTGCCCAGAGATCTGATGCATCTCTCCTAGTAAGGTAGGAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| 3UTR TCA 72 bp | ACAGGAGACAGAGACCTGGACACAGGTGTCAGCCATTaGAAGAAAAGTCAGGAGCTTTTGAAGTCACCTAAG | + |
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Preference number: 3 (lower is better) Translates to: TGDRDLDTGVSH*KKSQELLKSPK Trigger: CTTAGGTGACTTCAAAAGCTCCTGACTTTTCTTTCAATGGCTGACACCTGTGTCCAGGTCTCTGTCTCCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| 3UTR TCA 72 bp | AAGAATGGCACTCAGAAAAAGATAGAGAAGACCCAATaGCTGGATTTCAACTTCTCAAGACAGAGTTGCTAT | + |
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Preference number: 3 (lower is better) Translates to: KNGTQKKIEKTQ*LDFNFSRQSCY Trigger: ATAGCAACTCTGTCTTGAGAAGTTGAAATCCAGTCATTGGGTCTTCTCTATCTTTTTCTGAGTGCCATTCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR TCA 90 bp | TCTAGCAAGTGGCCCCAGCTCAGGAACATGTTCTTCAAGTATTTCCTACCTTACGCTCCATGTCCTGGGTaGGGTTGTTCCCATCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SSKWPQLRNMFFKYFLPYAPCPG*GCSHPS Trigger: AGAGGGATGGGAACAACCTCACCCAGGACATGGAGC...GTAAGGTAGGAAATACTTGAAGAACATGTTCCTGAGCTGGGGCCACTTGCTAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR CCA 90 bp | ATAGGCATCCATACCAACCATAATTCCATTCTAGCAAGTGGCCCCAGCTCAGGAACTGGTTCAGGTCCATaGCCACCAAGAGGAGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: IGIHTNHNSILASGPSSGTGSGP*PPRGGG Trigger: TCCTCCTCCTCTTGGTGGCCATGGACCTGAACCAGT...TCCTGAGCTGGGGCCACTTGCTAGAATGGAATTATGGTTGGTATGGATGCCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR TCA 90 bp | GCAAGTGGCCCCAGCTCAGGAACATGTTCTTCAAGTATTTCCTACCTTACTAGGAGTCTGCAGCCAGTGTaGGCCTGCACAATACTGGTT | + |
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Preference number: 4 (lower is better) Translates to: ASGPSSGTCSSSISYLTRSLQPV*ACTILV Trigger: AACCAGTATTGTGCAGGCTCACACTGGCTGCAGACT...CCTAGTAAGGTAGGAAATACTTGAAGAACATGTTCCTGAGCTGGGGCCACTTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR GCA 90 bp | CAAGTATTTCCTACCTTACTAGGAGAGATGCATCAGATCTCTGGGCACTGTCCAAGAGGAGGAGGAGTGTaGAGCATCCAGGGTTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: QVFPTLLGEMHQISGHCPRGGGV*SIQGSS Trigger: TGAGGAACCCTGGATGCTGCACACTCCTCCTCCTCT...TGGACAGTGCCCAGAGATCTGATGCATCTCTCCTAGTAAGGTAGGAAATACTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR GCA 90 bp | TCTAGCAAGTGGCCCCAGCTCAGGAACATGTTCTTCAAGTATTTCCTACCTTACTGTATTCAGCTCCCTTaGCCTCTGCAGTCCAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: SSKWPQLRNMFFKYFLPYCIQLP*PLQSRS Trigger: GCTCCTGGACTGCAGAGGGCAAGGGAGCTGAATACA...GTAAGGTAGGAAATACTTGAAGAACATGTTCCTGAGCTGGGGCCACTTGCTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR TCA 90 bp | GCAAGTGGCCCCAGCTCAGGAACATGTTCTTCAAGTATTTCCTACCTTACTAGGGTTCCCATTTCAGAGTaGGAGGCTCAGGTAACCCTT | + |
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Preference number: 4 (lower is better) Translates to: ASGPSSGTCSSSISYLTRVPISE*EAQVTL Trigger: AAGGGTTACCTGAGCCTCTCACTCTGAAATGGGAAC...CCTAGTAAGGTAGGAAATACTTGAAGAACATGTTCCTGAGCTGGGGCCACTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR GCA 90 bp | GCAAGTGGCCCCAGCTCAGGAACATGTTCTTCAAGTATTTCCTACCTTACTAGGTTCCTGCTCCATCCATaGAGCCCGAGGTTTCAAAAT | + |
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Preference number: 4 (lower is better) Translates to: ASGPSSGTCSSSISYLTRFLLHP*SPRFQN Trigger: ATTTTGAAACCTCGGGCTGCATGGATGGAGCAGGAA...CCTAGTAAGGTAGGAAATACTTGAAGAACATGTTCCTGAGCTGGGGCCACTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR GCA 90 bp | AGAGAAGACCCAATGACTGGATTTCAACTTCTCAAGACAGAGTTGCTATGTTATAGCTCCCTTGCCCTCTaGAGTCCAGGAGCTCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: REDPMTGFQLLKTELLCYSSLAL*SPGAQV Trigger: GACCTGAGCTCCTGGACTGCAGAGGGCAAGGGAGCT...ATAACATAGCAACTCTGTCTTGAGAAGTTGAAATCCAGTCATTGGGTCTTCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR TCA 90 bp | CAAGTATTTCCTACCTTACTAGGAGAGATGCATCAGATCTCTGGGCACTGTCCACCAAAAATGCAATGTTaGAAGTCTGCAGCCAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: QVFPTLLGEMHQISGHCPPKMQC*KSAASV Trigger: CACACTGGCTGCAGACTTTCAACATTGCATTTTTGG...TGGACAGTGCCCAGAGATCTGATGCATCTCTCCTAGTAAGGTAGGAAATACTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR GCA 90 bp | GGAACATGTTCTTCAAGTATTTCCTACCTTACTAGGAGAGATGCATCAGATCTCGCAATGTTGAAAGTCTaGAGCCAGTGTGAGCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: GTCSSSISYLTRRDASDLAMLKV*SQCEPA Trigger: TGCAGGCTCACACTGGCTGCAGACTTTCAACATTGC...GAGATCTGATGCATCTCTCCTAGTAAGGTAGGAAATACTTGAAGAACATGTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR GCA 90 bp | GGAACATGTTCTTCAAGTATTTCCTACCTTACTAGGAGAGATGCATCAGATCTCCAGGCCGATGAGGATTaGTATGATGGGGATGGTTTG | + |
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Preference number: 4 (lower is better) Translates to: GTCSSSISYLTRRDASDLQADED*YDGDGL Trigger: CAAACCATCCCCATCATAGCAATCCTCATCGGCCTG...GAGATCTGATGCATCTCTCCTAGTAAGGTAGGAAATACTTGAAGAACATGTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR CCA 90 bp | GCAAGTGGCCCCAGCTCAGGAACATGTTCTTCAAGTATTTCCTACCTTACTAGGTTTCAAAATAGCCATTaGTTCTTTGCTGTCAAATCC | + |
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Preference number: 4 (lower is better) Translates to: ASGPSSGTCSSSISYLTRFQNSH*FFAVKS Trigger: GGATTTGACAGCAAAGAACCAATGGCTATTTTGAAA...CCTAGTAAGGTAGGAAATACTTGAAGAACATGTTCCTGAGCTGGGGCCACTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR GCA 90 bp | TCAGAAAAAGATAGAGAAGACCCAATGACTGGATTTCAACTTCTCAAGACAGAGGCCAGGCTCCAAAAATaGAATGTTGAAAGTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SEKDREDPMTGFQLLKTEARLQK*NVESLQ Trigger: CTGCAGACTTTCAACATTGCATTTTTGGAGCCTGGC...CTCTGTCTTGAGAAGTTGAAATCCAGTCATTGGGTCTTCTCTATCTTTTTCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR GCA 90 bp | TTCTTCTTGCTTTCATTGGGTTTACTCATTAAATACACCATAGGAAGAAGTCACTACTTAGGTAGTTCCTaGTCCATCCATGCAGCCCGA | + |
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Preference number: 4 (lower is better) Translates to: FFLLSLGLLIKYTIGRSHYLGSS*SIHAAR Trigger: TCGGGCTGCATGGATGGAGCAGGAACTACCTAAGTA...GTGACTTCTTCCTATGGTGTATTTAATGAGTAAACCCAATGAAAGCAAGAAGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR GCA 90 bp | TTCTTCTTGCTTTCATTGGGTTTACTCATTAAATACACCATAGGAAGAAGTCACAGTCTTCCACCTTTCTaGCTCACTCATATTCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: FFLLSLGLLIKYTIGRSHSLPPF*LTHILP Trigger: TGGGAGAATATGAGTGAGGCAGAAAGGTGGAAGACT...GTGACTTCTTCCTATGGTGTATTTAATGAGTAAACCCAATGAAAGCAAGAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| 3UTR CAA 72 bp | GACCCAATGACTGGATTTCAACTTCTCAAGACAGAGTaGCTATGTTATTCTTCTTGCTTTCATTGGGTTTAC | + |
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Preference number: 4 (lower is better) Translates to: DPMTGFQLLKTE*LCYSSCFHWVY Trigger: GTAAACCCAATGAAAGCAAGAAGAATAACATAGCAACTCTGTCTTGAGAAGTTGAAATCCAGTCATTGGGTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS CCA 90 bp | AAGTCTGCAGCCAGTGTGAGCCTGCACAATACTGGTTCAGGTCCATaGCCACCAAGAGGAGGAGGAGTGTGCAGCATCCAGGGTTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: KSAASVSLHNTGSGP*PPRGGGVCSIQGSS Trigger: TGAGGAACCCTGGATGCTGCACACTCCTCCTCCTCTTGGTGGCCATGGACCTGAACCAGTATTGTGCAGGCTCACACTGGCTGCAGACTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS CCA 90 bp | AATGCAATGTTGAAAGTCTGCAGCCAGTGTGAGCCTGCACAATACTaGTTCAGGTCCATGGCCACCAAGAGGAGGAGGAGTGTGCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: NAMLKVCSQCEPAQY*FRSMATKRRRSVQH Trigger: ATGCTGCACACTCCTCCTCCTCTTGGTGGCCATGGACCTGAACCAGTATTGTGCAGGCTCACACTGGCTGCAGACTTTCAACATTGCATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR CAA 90 bp | GATGCATCAGATCTCTGGGCACTGTCCATGCCTATGGCAGTACAGCATCAGACCCCATCAGTAGCCACATaGCAGCCATATACTTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: DASDLWALSMPMAVQHQTPSVAT*QPYTSC Trigger: GCAGGAAGTATATGGCTGCAATGTGGCTACTGATGG...GGTCTGATGCTGTACTGCCATAGGCATGGACAGTGCCCAGAGATCTGATGCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS GCA 90 bp | CACAGTTCCCACCACCAAAGTTCCAAGAACCAGGCCGATGAGGATTaGTATGATGGGGATGGTTTGTGGAGGTTCCCATTTCAGAGTGAG | + |
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Preference number: 5 (lower is better) Translates to: HSSHHQSSKNQADED*YDGDGLWRFPFQSE Trigger: CTCACTCTGAAATGGGAACCTCCACAAACCATCCCCATCATAGCAATCCTCATCGGCCTGGTTCTTGGAACTTTGGTGGTGGGAACTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR CAA 90 bp | ATAGGCATCCATACCAACCATAATTCCATTCTAGCAAGTGGCCCCAGCTCAGGAATGTATTCAGCTCCCTaGCCCTCTGCAGTCCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: IGIHTNHNSILASGPSSGMYSAP*PSAVQE Trigger: CTCCTGGACTGCAGAGGGCAAGGGAGCTGAATACAT...TCCTGAGCTGGGGCCACTTGCTAGAATGGAATTATGGTTGGTATGGATGCCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR CAA 90 bp | ATTCTAGCAAGTGGCCCCAGCTCAGGAACATGTTCTTCAAGTATTTCCTACCTTATGTCCTGGGTGAGGTaGTTCCCATCCCTCTTCCAG | + |
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Preference number: 5 (lower is better) Translates to: ILASGPSSGTCSSSISYLMSWVR*FPSLFQ Trigger: CTGGAAGAGGGATGGGAACAACCTCACCCAGGACAT...AAGGTAGGAAATACTTGAAGAACATGTTCCTGAGCTGGGGCCACTTGCTAGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR CAA 90 bp | GATGCATCAGATCTCTGGGCACTGTCCATGCCTATGGCAGTACAGCATCAGACCACAATAGCAGAATTTTaGTTGTCTCCACGTTCCAAT | + |
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Preference number: 5 (lower is better) Translates to: DASDLWALSMPMAVQHQTTIAEF*LSPRSN Trigger: ATTGGAACGTGGAGACAACAAAAATTCTGCTATTGT...GGTCTGATGCTGTACTGCCATAGGCATGGACAGTGCCCAGAGATCTGATGCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR CAA 90 bp | CAAGTATTTCCTACCTTACTAGGAGAGATGCATCAGATCTCTGGGCACTGTCCAGTATCTAAGAAGCCTTaGTACACACTCCCCTCGAAG | + |
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Preference number: 5 (lower is better) Translates to: QVFPTLLGEMHQISGHCPVSKKP*YTLPSK Trigger: CTTCGAGGGGAGTGTGTACAAAGGCTTCTTAGATAC...TGGACAGTGCCCAGAGATCTGATGCATCTCTCCTAGTAAGGTAGGAAATACTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS-3UTR CAA 90 bp | ATTCTAGCAAGTGGCCCCAGCTCAGGAACATGTTCTTCAAGTATTTCCTACCTTTCCAAAAATGCAATGTaGAAAGTCTGCAGCCAGTGT | + |
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Preference number: 5 (lower is better) Translates to: ILASGPSSGTCSSSISYLSKNAM*KVCSQC Trigger: ACACTGGCTGCAGACTTTCAACATTGCATTTTTGGA...AAGGTAGGAAATACTTGAAGAACATGTTCCTGAGCTGGGGCCACTTGCTAGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS CCA 72 bp | GCCAGTGTGAGCCTGCACAATACTGGTTCAGGTCCATaGCCACCAAGAGGAGGAGGAGTGTGCAGCATCCAG | + |
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Preference number: 6 (lower is better) Translates to: ASVSLHNTGSGP*PPRGGGVCSIQ Trigger: CTGGATGCTGCACACTCCTCCTCCTCTTGGTGGCCATGGACCTGAACCAGTATTGTGCAGGCTCACACTGGC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS CCA 72 bp | TTGAAAGTCTGCAGCCAGTGTGAGCCTGCACAATACTaGTTCAGGTCCATGGCCACCAAGAGGAGGAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: LKVCSQCEPAQY*FRSMATKRRRS Trigger: ACTCCTCCTCCTCTTGGTGGCCATGGACCTGAACCAGTATTGTGCAGGCTCACACTGGCTGCAGACTTTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS CAA 72 bp | AACCAGGCCGATGAGGATTGCTATGATGGGGATGGTTaGTGGAGGTTCCCATTTCAGAGTGAGAGGCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: NQADEDCYDGDG*WRFPFQSERLR Trigger: CCTGAGCCTCTCACTCTGAAATGGGAACCTCCACAAACCATCCCCATCATAGCAATCCTCATCGGCCTGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS TCA 72 bp | CTCCAAAAATGCAATGTTGAAAGTCTGCAGCCAGTGTaGGCCTGCACAATACTGGTTCAGGTCCATGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: LQKCNVESLQPV*ACTILVQVHGH Trigger: GTGGCCATGGACCTGAACCAGTATTGTGCAGGCTCACACTGGCTGCAGACTTTCAACATTGCATTTTTGGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS GCA 72 bp | CACCACCAAAGTTCCAAGAACCAGGCCGATGAGGATTaGTATGATGGGGATGGTTTGTGGAGGTTCCCATTT | + |
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Preference number: 6 (lower is better) Translates to: HHQSSKNQADED*YDGDGLWRFPF Trigger: AAATGGGAACCTCCACAAACCATCCCCATCATAGCAATCCTCATCGGCCTGGTTCTTGGAACTTTGGTGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS CAA 90 bp | TGGATGAACCGGGAATTAATCATGCCAGGCTCCAAAAATGCAATGTaGAAAGTCTGCAGCCAGTGTGAGCCTGCACAATACTGGTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: WMNRELIMPGSKNAM*KVCSQCEPAQYWFR Trigger: CCTGAACCAGTATTGTGCAGGCTCACACTGGCTGCAGACTTTCAACATTGCATTTTTGGAGCCTGGCATGATTAATTCCCGGTTCATCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS GCA 72 bp | TACACACTCCCCTCGAAGGTAAGTCTTCCACCTTTCTaGCTCACTCATATTCTCCCACCTGTTCTTCATGTA | + |
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Preference number: 6 (lower is better) Translates to: YTLPSKVSLPPF*LTHILPPVLHV Trigger: TACATGAAGAACAGGTGGGAGAATATGAGTGAGGCAGAAAGGTGGAAGACTTACCTTCGAGGGGAGTGTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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| CDS CAA 90 bp | AGCCCGAGGTTTCAAAATAGCCATTGGTTCTTTGCTGTCAAATCCTaGATACTGTATAGAGTCTACATAGCCAATGTGGATGAACCGGGA | + |
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Preference number: 6 (lower is better) Translates to: SPRFQNSHWFFAVKS*ILYRVYIANVDEPG Trigger: TCCCGGTTCATCCACATTGGCTATGTAGACTCTATACAGTATCAAGGATTTGACAGCAAAGAACCAATGGCTATTTTGAAACCTCGGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073546.5 |
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