Pregenerated sensors for H2-M10.1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024448Ensembl transcript IDs: ENSMUST00000025322.14, ENSMUST00000172576.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTTTTTGCTGGAGGTCTCCCAGACCTGTCTCTTTTTGACAGGATACAGACACATAAAGCCAGGAGTTTTTaGAGTCACAGAAGGTTTGTA | + |
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Preference number: 2 (lower is better) Translates to: VFAGGLPDLSLFDRIQTHKARSF*SHRRFV Trigger: TACAAACCTTCTGTGACTTCAAAAACTCCTGGCTTT...ATGTGTCTGTATCCTGTCAAAAAGAGACAGGTCTGGGAGACCTCCAGCAAAAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| 3UTR-3UTR CAA 90 bp | GTTTTTGCTGGAGGTCTCCCAGACCTGTCTCTTTTTGACAGGATACAGACACATAAAAGCCAGGAGTTTTaGAAGTCACAGAAGGTTTGT | + |
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Preference number: 3 (lower is better) Translates to: VFAGGLPDLSLFDRIQTHKSQEF*KSQKVC Trigger: ACAAACCTTCTGTGACTTCAAAAACTCCTGGCTTTT...ATGTGTCTGTATCCTGTCAAAAAGAGACAGGTCTGGGAGACCTCCAGCAAAAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| 3UTR TCA 72 bp | ACAGGATACAGACACATGGACATAGGTGTCAGCCATTaGAAGAAAAGCCAGGAGTTTTTGAAGTCACAGAAG | + |
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Preference number: 3 (lower is better) Translates to: TGYRHMDIGVSH*KKSQEFLKSQK Trigger: CTTCTGTGACTTCAAAAACTCCTGGCTTTTCTTTCAATGGCTGACACCTATGTCCATGTGTCTGTATCCTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| 3UTR-3UTR CAA 90 bp | AAATGTACAGCTTACTGTAAACTAAAGGTCAGTTTTTGCTGGAGGTCTCCCAGACATAGGTGTCAGCCATaGAAAGAAAAGCCAGGAGTT | + |
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Preference number: 3 (lower is better) Translates to: KCTAYCKLKVSFCWRSPRHRCQP*KEKPGV Trigger: AACTCCTGGCTTTTCTTTCAATGGCTGACACCTATG...TCTGGGAGACCTCCAGCAAAAACTGACCTTTAGTTTACAGTAAGCTGTACATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR GCA 90 bp | CCAGACCTGTCTCTTTTTGACAGGATACAGACACATGGACATAGGTGTCAGCCAAGCTCCCTTGCCCTCTaGAGTCCAAGAGCTCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: PDLSLFDRIQTHGHRCQPSSLAL*SPRAQV Trigger: GACCTGAGCTCTTGGACTGCAGAGGGCAAGGGAGCT...TGGCTGACACCTATGTCCATGTGTCTGTATCCTGTCAAAAAGAGACAGGTCTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR GCA 90 bp | CATGGACATAGGTGTCAGCCATTGAAAGAAAAGCCAGGAGTTTTTGAAGTCACACGTGTTGAGCTCCCTTaGCCTCTGCAGTCCAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: HGHRCQPLKEKPGVFEVTRVELP*PLQSKS Trigger: GCTCTTGGACTGCAGAGGGCAAGGGAGCTCAACACG...TGTGACTTCAAAAACTCCTGGCTTTTCTTTCAATGGCTGACACCTATGTCCATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR CCA 90 bp | CCAGACCTGTCTCTTTTTGACAGGATACAGACACATGGACATAGGTGTCAGCCATCAGGTCTTACATGGTaGGTCACATGTGTTTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: PDLSLFDRIQTHGHRCQPSGLTW*VTCVWG Trigger: CCCCCAAACACATGTGACCCACCATGTAAGACCTGA...TGGCTGACACCTATGTCCATGTGTCTGTATCCTGTCAAAAAGAGACAGGTCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR TCA 90 bp | CAGACCTGTCTCTTTTTGACAGGATACAGACACATGGACATAGGTGTCAGCCATAGTCTGCAGCCAGTGTaGTCCTGCACAATAGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: QTCLFLTGYRHMDIGVSHSLQPV*SCTIVV Trigger: AACCACTATTGTGCAGGATCACACTGGCTGCAGACT...ATGGCTGACACCTATGTCCATGTGTCTGTATCCTGTCAAAAAGAGACAGGTCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR GCA 90 bp | AATAAATGTACAGCTTACTGTAAACTAAAGGTCAGTTTTTGCTGGAGGTCTCCCGGAGGAGCAGGAGTGTaGAGGGTCCAGTGTTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: NKCTAYCKLKVSFCWRSPGGAGV*RVQCSS Trigger: TGAGGAACACTGGACCCTGCACACTCCTGCTCCTCC...GGGAGACCTCCAGCAAAAACTGACCTTTAGTTTACAGTAAGCTGTACATTTATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR TCA 90 bp | GTCTCCCAGACCTGTCTCTTTTTGACAGGATACAGACACATGGACATAGGTGTCCAATTCCAGAACTCTTaGTGTCTCCTTTTCCCAATA | + |
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Preference number: 4 (lower is better) Translates to: VSQTCLFLTGYRHMDIGVQFQNS*CLLFPI Trigger: TATTGGGAAAAGGAGACATCAAGAGTTCTGGAATTG...GACACCTATGTCCATGTGTCTGTATCCTGTCAAAAAGAGACAGGTCTGGGAGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR GCA 90 bp | AAATGTACAGCTTACTGTAAACTAAAGGTCAGTTTTTGCTGGAGGTCTCCCAGAAGTCTTCCTCCGTTTTaGTTCACCTGCATCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: KCTAYCKLKVSFCWRSPRSLPPF*FTCILP Trigger: TGGGAGGATGCAGGTGAAGCAAAACGGAGGAAGACT...TCTGGGAGACCTCCAGCAAAAACTGACCTTTAGTTTACAGTAAGCTGTACATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR TCA 90 bp | TGTACAGCTTACTGTAAACTAAAGGTCAGTTTTTGCTGGAGGTCTCCCAGACCTCCAAAATTACAATGTTaGAAGTCTGCAGCCAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: CTAYCKLKVSFCWRSPRPPKLQC*KSAASV Trigger: CACACTGGCTGCAGACTTTCAACATTGTAATTTTGG...AGGTCTGGGAGACCTCCAGCAAAAACTGACCTTTAGTTTACAGTAAGCTGTACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| 3UTR CAA 72 bp | GACAGGATACAGACACATGGACATAGGTGTCAGCCATaGAAAGAAAAGCCAGGAGTTTTTGAAGTCACAGAA | + |
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Preference number: 4 (lower is better) Translates to: DRIQTHGHRCQP*KEKPGVFEVTE Trigger: TTCTGTGACTTCAAAAACTCCTGGCTTTTCTTTCAATGGCTGACACCTATGTCCATGTGTCTGTATCCTGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR GCA 90 bp | AAATGTACAGCTTACTGTAAACTAAAGGTCAGTTTTTGCTGGAGGTCTCCCAGACTGCAGATGGGTCTTTaGTGTCAAATCCCTGATACT | + |
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Preference number: 4 (lower is better) Translates to: KCTAYCKLKVSFCWRSPRLQMGL*CQIPDT Trigger: AGTATCAGGGATTTGACAGCAAAGACCCATCTGCAG...TCTGGGAGACCTCCAGCAAAAACTGACCTTTAGTTTACAGTAAGCTGTACATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR CCA 90 bp | AATAAATGTACAGCTTACTGTAAACTAAAGGTCAGTTTTTGCTGGAGGTCTCCCTTCCCAATATTCAGGTaGCTCCAGCTCTATCCATGC | + |
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Preference number: 4 (lower is better) Translates to: NKCTAYCKLKVSFCWRSPFPIFR*LQLYPC Trigger: GCATGGATAGAGCTGGAGCCACCTGAATATTGGGAA...GGGAGACCTCCAGCAAAAACTGACCTTTAGTTTACAGTAAGCTGTACATTTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS GCA 90 bp | TACACACTCCCCTTGCAGGTAAGTCTTCCTCCGTTTTGCTTCACCTaGATCCTCCCACCTGCTCTTCGCGTGTTGAGCTCCCTTGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: YTLPLQVSLPPFCFT*ILPPALRVLSSLAL Trigger: GAGGGCAAGGGAGCTCAACACGCGAAGAGCAGGTGGGAGGATGCAGGTGAAGCAAAACGGAGGAAGACTTACCTGCAAGGGGAGTGTGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025322.14 ENSMUST00000172576.2 |
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| CDS GCA 90 bp | AAGCCTTTGTACACACTCCCCTTGCAGGTAAGTCTTCCTCCGTTTTaGTTCACCTGCATCCTCCCACCTGCTCTTCGCGTGTTGAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: KPLYTLPLQVSLPPF*FTCILPPALRVLSS Trigger: GGAGCTCAACACGCGAAGAGCAGGTGGGAGGATGCAGGTGAAGCAAAACGGAGGAAGACTTACCTGCAAGGGGAGTGTGTACAAAGGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025322.14 ENSMUST00000172576.2 |
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| CDS TCA 90 bp | CATGCCAGGCTCCAAAATTACAATGTTGAAAGTCTGCAGCCAGTGTaGTCCTGCACAATAGTGGTTCAGGTCCAAGGCCACCATCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: HARLQNYNVESLQPV*SCTIVVQVQGHHQE Trigger: CTCCTGATGGTGGCCTTGGACCTGAACCACTATTGTGCAGGATCACACTGGCTGCAGACTTTCAACATTGTAATTTTGGAGCCTGGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS CCA 90 bp | TGGCTCCAGCTCTATCCATGCAGCTCGAGGTTGCATCCCTGCAGATaGGTCTTTGCTGTCAAATCCCTGATACTGTATGGAGTCTACATA | + |
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Preference number: 5 (lower is better) Translates to: WLQLYPCSSRLHPCR*VFAVKSLILYGVYI Trigger: TATGTAGACTCCATACAGTATCAGGGATTTGACAGCAAAGACCCATCTGCAGGGATGCAACCTCGAGCTGCATGGATAGAGCTGGAGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR CAA 90 bp | CAGACCTGTCTCTTTTTGACAGGATACAGACACATGGACATAGGTGTCAGCCATAAGTCTTCCTCCGTTTaGCTTCACCTGCATCCTCCC | + |
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Preference number: 5 (lower is better) Translates to: QTCLFLTGYRHMDIGVSHKSSSV*LHLHPP Trigger: GGGAGGATGCAGGTGAAGCAAAACGGAGGAAGACTT...ATGGCTGACACCTATGTCCATGTGTCTGTATCCTGTCAAAAAGAGACAGGTCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR CAA 90 bp | AATAAATGTACAGCTTACTGTAAACTAAAGGTCAGTTTTTGCTGGAGGTCTCCCCCATGCAGCTCGAGGTaGCATCCCTGCAGATGGGTC | + |
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Preference number: 5 (lower is better) Translates to: NKCTAYCKLKVSFCWRSPPCSSR*HPCRWV Trigger: GACCCATCTGCAGGGATGCAACCTCGAGCTGCATGG...GGGAGACCTCCAGCAAAAACTGACCTTTAGTTTACAGTAAGCTGTACATTTATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR CAA 90 bp | CCAGACCTGTCTCTTTTTGACAGGATACAGACACATGGACATAGGTGTCAGCCAGTATCTAAGAAGCCTTaGTACACACTCCCCTTGCAG | + |
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Preference number: 5 (lower is better) Translates to: PDLSLFDRIQTHGHRCQPVSKKP*YTLPLQ Trigger: CTGCAAGGGGAGTGTGTACAAAGGCTTCTTAGATAC...TGGCTGACACCTATGTCCATGTGTCTGTATCCTGTCAAAAAGAGACAGGTCTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR CAA 90 bp | GTCTCCCAGACCTGTCTCTTTTTGACAGGATACAGACACATGGACATAGGTGTCACAATTCCAGAACTCTaGATGTCTCCTTTTCCCAAT | + |
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Preference number: 5 (lower is better) Translates to: VSQTCLFLTGYRHMDIGVTIPEL*MSPFPN Trigger: ATTGGGAAAAGGAGACATCAAGAGTTCTGGAATTGT...GACACCTATGTCCATGTGTCTGTATCCTGTCAAAAAGAGACAGGTCTGGGAGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS-3UTR CAA 90 bp | CAGACCTGTCTCTTTTTGACAGGATACAGACACATGGACATAGGTGTCAGCCATTCCAAAATTACAATGTaGAAAGTCTGCAGCCAGTGT | + |
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Preference number: 5 (lower is better) Translates to: QTCLFLTGYRHMDIGVSHSKITM*KVCSQC Trigger: ACACTGGCTGCAGACTTTCAACATTGTAATTTTGGA...ATGGCTGACACCTATGTCCATGTGTCTGTATCCTGTCAAAAAGAGACAGGTCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS GCA 72 bp | CCCTTGCAGGTAAGTCTTCCTCCGTTTTGCTTCACCTaGATCCTCCCACCTGCTCTTCGCGTGTTGAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: PLQVSLPPFCFT*ILPPALRVLSS Trigger: GGAGCTCAACACGCGAAGAGCAGGTGGGAGGATGCAGGTGAAGCAAAACGGAGGAAGACTTACCTGCAAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025322.14 ENSMUST00000172576.2 |
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| CDS GCA 72 bp | TCAGGTGGCTCCAGCTCTATCCATGCAGCTCGAGGTTaGATCCCTGCAGATGGGTCTTTGCTGTCAAATCCC | + |
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Preference number: 6 (lower is better) Translates to: SGGSSSIHAARG*IPADGSLLSNP Trigger: GGGATTTGACAGCAAAGACCCATCTGCAGGGATGCAACCTCGAGCTGCATGGATAGAGCTGGAGCCACCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS GCA 72 bp | TACACACTCCCCTTGCAGGTAAGTCTTCCTCCGTTTTaGTTCACCTGCATCCTCCCACCTGCTCTTCGCGTG | + |
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Preference number: 6 (lower is better) Translates to: YTLPLQVSLPPF*FTCILPPALRV Trigger: CACGCGAAGAGCAGGTGGGAGGATGCAGGTGAAGCAAAACGGAGGAAGACTTACCTGCAAGGGGAGTGTGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025322.14 ENSMUST00000172576.2 |
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| CDS CAA 72 bp | GTACACACTCCCCTTGCAGGTAAGTCTTCCTCCGTTTaGCTTCACCTGCATCCTCCCACCTGCTCTTCGCGT | + |
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Preference number: 6 (lower is better) Translates to: VHTPLAGKSSSV*LHLHPPTCSSR Trigger: ACGCGAAGAGCAGGTGGGAGGATGCAGGTGAAGCAAAACGGAGGAAGACTTACCTGCAAGGGGAGTGTGTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025322.14 ENSMUST00000172576.2 |
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| CDS CAA 72 bp | TTCAGGTGGCTCCAGCTCTATCCATGCAGCTCGAGGTaGCATCCCTGCACAATAGTGGTTCAGGTCCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: FRWLQLYPCSSR*HPCTIVVQVQG Trigger: GCCTTGGACCTGAACCACTATTGTGCAGGGATGCAACCTCGAGCTGCATGGATAGAGCTGGAGCCACCTGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172576.2 |
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| CDS CAA 90 bp | GAAGCCTTTGTACACACTCCCCTTGCAGGTAAGTCTTCCTCCGTTTaGCTTCACCTGCATCCTCCCACCTGCTCTTCGCGTGTTGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: EAFVHTPLAGKSSSV*LHLHPPTCSSRVEL Trigger: GAGCTCAACACGCGAAGAGCAGGTGGGAGGATGCAGGTGAAGCAAAACGGAGGAAGACTTACCTGCAAGGGGAGTGTGTACAAAGGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025322.14 ENSMUST00000172576.2 |
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| CDS CAA 72 bp | TTCAGGTGGCTCCAGCTCTATCCATGCAGCTCGAGGTaGCATCCCTGCAGATGGGTCTTTGCTGTCAAATCC | + |
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Preference number: 6 (lower is better) Translates to: FRWLQLYPCSSR*HPCRWVFAVKS Trigger: GGATTTGACAGCAAAGACCCATCTGCAGGGATGCAACCTCGAGCTGCATGGATAGAGCTGGAGCCACCTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS GCA 72 bp | CACCACCAAGGTTCCAAGAACCAGGCCGATGAGAATTaGTATGATGGGGATGGTGTGTGGAGGCTCCCATTT | + |
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Preference number: 6 (lower is better) Translates to: HHQGSKNQADEN*YDGDGVWRLPF Trigger: AAATGGGAGCCTCCACACACCATCCCCATCATAGCAATTCTCATCGGCCTGGTTCTTGGAACCTTGGTGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025322.14 ENSMUST00000172576.2 |
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| CDS GCA 72 bp | CTTTTCCCAATATTCAGGTGGCTCCAGCTCTATCCATaGAGCTCGAGGTTGCATCCCTGCAGATGGGTCTTT | + |
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Preference number: 6 (lower is better) Translates to: LFPIFRWLQLYP*SSRLHPCRWVF Trigger: AAAGACCCATCTGCAGGGATGCAACCTCGAGCTGCATGGATAGAGCTGGAGCCACCTGAATATTGGGAAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS GCA 72 bp | CTTTTCCCAATATTCAGGTGGCTCCAGCTCTATCCATaGAGCTCGAGGTTGCATCCCTGCACAATAGTGGTT | + |
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Preference number: 6 (lower is better) Translates to: LFPIFRWLQLYP*SSRLHPCTIVV Trigger: AACCACTATTGTGCAGGGATGCAACCTCGAGCTGCATGGATAGAGCTGGAGCCACCTGAATATTGGGAAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172576.2 |
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| CDS TCA 72 bp | CCTCATTTAGGGTTAAGTAATCATAGCCATAGTAGGTaGGTCGGTAGTGACCGCCGAGGAAGCTCCCATCAT | + |
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Preference number: 6 (lower is better) Translates to: PHLGLSNHSHSR*VGSDRRGSSHH Trigger: ATGATGGGAGCTTCCTCGGCGGTCACTACCGACTCACCTACTATGGCTATGATTACTTAACCCTAAATGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025322.14 ENSMUST00000172576.2 |
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| CDS GCA 72 bp | ATGCAGCTCGAGGTTGCATCCCTGCAGATGGGTCTTTaGTGTCAAATCCCTGATACTGTATGGAGTCTACAT | + |
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Preference number: 6 (lower is better) Translates to: MQLEVASLQMGL*CQIPDTVWSLH Trigger: ATGTAGACTCCATACAGTATCAGGGATTTGACAGCAAAGACCCATCTGCAGGGATGCAACCTCGAGCTGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS TCA 72 bp | CTCCAAAATTACAATGTTGAAAGTCTGCAGCCAGTGTaGTCCTGCACAATAGTGGTTCAGGTCCAAGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: LQNYNVESLQPV*SCTIVVQVQGH Trigger: GTGGCCTTGGACCTGAACCACTATTGTGCAGGATCACACTGGCTGCAGACTTTCAACATTGTAATTTTGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025322.14 |
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| CDS CAA 90 bp | TTAACCGAAGAACTTGTCTCTCTACCTGTGACAATTCCAGAACTCTaGATGTCTCCTTTTCCCAATATTCAGGTGGCTCCAGCTCTATCC | + |
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Preference number: 6 (lower is better) Translates to: LTEELVSLPVTIPEL*MSPFPNIQVAPALS Trigger: GGATAGAGCTGGAGCCACCTGAATATTGGGAAAAGGAGACATCAAGAGTTCTGGAATTGTCACAGGTAGAGAGACAAGTTCTTCGGTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025322.14 ENSMUST00000172576.2 |
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