RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for H2-M1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037334

Ensembl transcript IDs: ENSMUST00000041662.3

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp AGTCTCATACATCCATGGTGCCCGGCTCTCCACCCCCAGATTCTCTaGTATACTGTTGAATCCCATGATCTGTGTATCATCCACATAGCC +
Preference number: 5 (lower is better)
Translates to: SLIHPWCPALHPQIL*YTVESHDLCIIHIA
Trigger: GGCTATGTGGATGATACACAGATCATGGGATTCAACAGTATATCAGAGAATCTGGGGGTGGAGAGCCGGGCACCATGGATGTATGAGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041662.3
CDS CCA 90 bp GTGTCTGTTCTCAGCAAACTCTTCTTCCCAAAGGCCAGGAATCGATaGAGTAAGTTCACACATGTAATCTGCAGGAAAGACTTCACCTGG +
Preference number: 5 (lower is better)
Translates to: VSVLSKLFFPKARNR*SKFTHVICRKDFTW
Trigger: CCAGGTGAAGTCTTTCCTGCAGATTACATGTGTGAACTTACTCCATCGATTCCTGGCCTTTGGGAAGAAGAGTTTGCTGAGAACAGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041662.3
CDS GCA 90 bp TTCCCAAAGGCCAGGAATCGATGGAGTAAGTTCACACATGTAATCTaGAGGAAAGACTTCACCTGGTTTGCATATTTTATTTTCTCCCAC +
Preference number: 5 (lower is better)
Translates to: FPKARNRWSKFTHVI*RKDFTWFAYFIFSH
Trigger: GTGGGAGAAAATAAAATATGCAAACCAGGTGAAGTCTTTCCTGCAGATTACATGTGTGAACTTACTCCATCGATTCCTGGCCTTTGGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041662.3
CDS GCA 90 bp CCTTCTCTTCCATATAAGAAAAGTCATCACTGCTCCCATAAGGAGTaGTCCAAGTACCAAAGCAATAACAATAGCCAAGAAGGGAATGGT +
Preference number: 5 (lower is better)
Translates to: PSLPYKKSHHCSHKE*SKYQSNNNSQEGNG
Trigger: ACCATTCCCTTCTTGGCTATTGTTATTGCTTTGGTACTTGGAGCACTCCTTATGGGAGCAGTGATGACTTTTCTTATATGGAAGAGAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041662.3
CDS GCA 90 bp TTTCTTACCTCTAGTCCTTCTCTTCCATATAAGAAAAGTCATCACTaGTCCCATAAGGAGTGCTCCAAGTACCAAAGCAATAACAATAGC +
Preference number: 5 (lower is better)
Translates to: FLTSSPSLPYKKSHH*SHKECSKYQSNNNS
Trigger: GCTATTGTTATTGCTTTGGTACTTGGAGCACTCCTTATGGGAGCAGTGATGACTTTTCTTATATGGAAGAGAAGGACTAGAGGTAAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041662.3
CDS GCA 72 bp ATAGCCAAGAAGGGAATGGTGGGCTCAGGAGGCTCGTaGTTTGTCCATCTGATGGTGATGGGCTCAGATAGC +
Preference number: 6 (lower is better)
Translates to: IAKKGMVGSGGS*FVHLMVMGSDS
Trigger: GCTATCTGAGCCCATCACCATCAGATGGACAAAGCACGAGCCTCCTGAGCCCACCATTCCCTTCTTGGCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041662.3
CDS TCA 72 bp CATCCATGGTGCCCGGCTCTCCACCCCCAGATTCTCTaGTATACTGTTGAATCCCATGATCTGTGTATCATC +
Preference number: 6 (lower is better)
Translates to: HPWCPALHPQIL*YTVESHDLCII
Trigger: GATGATACACAGATCATGGGATTCAACAGTATATCAGAGAATCTGGGGGTGGAGAGCCGGGCACCATGGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041662.3
CDS CCA 72 bp CTCAGCAAACTCTTCTTCCCAAAGGCCAGGAATCGATaGAGTAAGTTCACACATGTAATCTGCAGGAAAGAC +
Preference number: 6 (lower is better)
Translates to: LSKLFFPKARNR*SKFTHVICRKD
Trigger: GTCTTTCCTGCAGATTACATGTGTGAACTTACTCCATCGATTCCTGGCCTTTGGGAAGAAGAGTTTGCTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041662.3
CDS GCA 72 bp TTTTATTTTCTCCCACATTTCCTTAAGCATCTCACCTaGCTTGCCAACTCCTCTCCATGTCTTCAGATCCTC +
Preference number: 6 (lower is better)
Translates to: FYFLPHFLKHLT*LANSSPCLQIL
Trigger: GAGGATCTGAAGACATGGAGAGGAGTTGGCAAGGCAGGTGAGATGCTTAAGGAAATGTGGGAGAAAATAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041662.3
CDS GCA 72 bp TCTAGTCCTTCTCTTCCATATAAGAAAAGTCATCACTaGTCCCATAAGGAGTGCTCCAAGTACCAAAGCAAT +
Preference number: 6 (lower is better)
Translates to: SSPSLPYKKSHH*SHKECSKYQSN
Trigger: ATTGCTTTGGTACTTGGAGCACTCCTTATGGGAGCAGTGATGACTTTTCTTATATGGAAGAGAAGGACTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041662.3
CDS GCA 72 bp GCCAGGAATCGATGGAGTAAGTTCACACATGTAATCTaGAGGAAAGACTTCACCTGGTTTGCATATTTTATT +
Preference number: 6 (lower is better)
Translates to: ARNRWSKFTHVI*RKDFTWFAYFI
Trigger: AATAAAATATGCAAACCAGGTGAAGTCTTTCCTGCAGATTACATGTGTGAACTTACTCCATCGATTCCTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041662.3