RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for H2-EB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067341

Ensembl transcript IDs: ENSMUST00000050325.10

Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACACTGGTAATGACCACTGGTAACAACATCCTTTGCATTAGGAAATaGCCAGGGGACACTGAGGGCCAGCCTGGGTTCTATGGCAGAGTC +
Preference number: 1 (lower is better)
Translates to: TLVMTTGNNILCIRK*PGDTEGQPGFYGRV
Trigger: GACTCTGCCATAGAACCCAGGCTGGCCCTCAGTGTCCCCTGGCCATTTCCTAATGCAAAGGATGTTGTTACCAGTGGTCATTACCAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 90 bp TGTGAAATTAAGGAAGTGGTTAGCTTGGCTTCAGAAATAGGTCAGTaGAGTCGGGCTGGTGAAGGTCTTCCTCAGTCCCTTCTTCCAGCC +
Preference number: 1 (lower is better)
Translates to: CEIKEVVSLASEIGQ*SRAGEGLPQSLLPA
Trigger: GGCTGGAAGAAGGGACTGAGGAAGACCTTCACCAGCCCGACTCCACTGACCTATTTCTGAAGCCAAGCTAACCACTTCCTTAATTTCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 90 bp TTGGACTATAGACATGCAGAGTCAAGGACGGAGAGAATGAATGCTTaGAATACACTCACACACAGTCAGGAGCAGAGACAATGGCTGCTG +
Preference number: 1 (lower is better)
Translates to: LDYRHAESRTERMNA*NTLTHSQEQRQWLL
Trigger: CAGCAGCCATTGTCTCTGCTCCTGACTGTGTGTGAGTGTATTCCAAGCATTCATTCTCTCCGTCCTTGACTCTGCATGTCTATAGTCCAA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 90 bp TGCTTATCCTTAGCAGAACAAATCTCAAAAGTGAGGGCCTGGCCTTaGGTAACTAATGACAATGACAGAGCAGGGGCGATTGTGGACACT +
Preference number: 1 (lower is better)
Translates to: CLSLAEQISKVRAWP*VTNDNDRAGAIVDT
Trigger: AGTGTCCACAATCGCCCCTGCTCTGTCATTGTCATTAGTTACCCAAGGCCAGGCCCTCACTTTTGAGATTTGTTCTGCTAAGGATAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR TCA 90 bp GATCCTGCTCAGCGCAGGTTCACAGAGGAGCAGACACCCATCATTTaGACCAAGTCACAGGTCCTCTTTAAACTCATCCAAAAAGTTTCT +
Preference number: 1 (lower is better)
Translates to: DPAQRRFTEEQTPII*TKSQVLFKLIQKVS
Trigger: AGAAACTTTTTGGATGAGTTTAAAGAGGACCTGTGACTTGGTTCAAATGATGGGTGTCTGCTCCTCTGTGAACCTGCGCTGAGCAGGATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR TCA 90 bp TCCCTCTGCTTCCCAAGTGCTGGGATTAAAGGCATGCACCACAGCTaGCTGGCGACTGCTAGCTTCTTACTTTTGAAACTAATTCTTCAA +
Preference number: 1 (lower is better)
Translates to: SLCFPSAGIKGMHHS*LATASFLLLKLILQ
Trigger: TTGAAGAATTAGTTTCAAAAGTAAGAAGCTAGCAGTCGCCAGTCAGCTGTGGTGCATGCCTTTAATCCCAGCACTTGGGAAGCAGAGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 90 bp ACAAGGGCACTCCATGCACATTCAGGAGCAAAGAGAATGGATGCTTaGACTATAGACATGCAGAGTCAAGGACAAAGAGAATGGATGCTT +
Preference number: 1 (lower is better)
Translates to: TRALHAHSGAKRMDA*TIDMQSQGQREWML
Trigger: AAGCATCCATTCTCTTTGTCCTTGACTCTGCATGTCTATAGTCCAAGCATCCATTCTCTTTGCTCCTGAATGTGCATGGAGTGCCCTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR TCA 90 bp AGAGATCTGGTTTCTCAGGAAATCTGTAGTAAAAAGCAATTTAATTaGTCTTGGAAAAGACATCTGCCTTGCTTCTCACATCAGACATGG +
Preference number: 1 (lower is better)
Translates to: RDLVSQEICSKKQFN*SWKRHLPCFSHQTW
Trigger: CCATGTCTGATGTGAGAAGCAAGGCAGATGTCTTTTCCAAGATCAATTAAATTGCTTTTTACTACAGATTTCCTGAGAAACCAGATCTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR GCA 90 bp AACAACATCCTTTGCATTAGGAAATGGCCAGGGGACACTGAGGGCCAGCCTGGGAGCAAAGAGAATGGATaGTTGGACTATAGACATGCA +
Preference number: 2 (lower is better)
Translates to: NNILCIRKWPGDTEGQPGSKENG*LDYRHA
Trigger: TGCATGTCTATAGTCCAAGCATCCATTCTCTTTGCT...CCCAGGCTGGCCCTCAGTGTCCCCTGGCCATTTCCTAATGCAAAGGATGTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR CCA 90 bp TCCAGGTTTAGTCCATTTAGCTTCCTTTCTGTCACCATGACAAACACTCTGACACAGGAGCAGAGACAATaGCTGCTGCTGTGTGTGCCC +
Preference number: 2 (lower is better)
Translates to: SRFSPFSFLSVTMTNTLTQEQRQ*LLLCVP
Trigger: GGGCACACACAGCAGCAGCCATTGTCTCTGCTCCTG...TGTCAGAGTGTTTGTCATGGTGACAGAAAGGAAGCTAAATGGACTAAACCTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR TCA 90 bp GCTTGGAATACACTCACACACAGTCAGGAGCAGAGACAATGGCTGCTGCTGTGTACTGCATGCTGCTGCTaGAGAGAATTTTATGTCTGT +
Preference number: 2 (lower is better)
Translates to: AWNTLTHSQEQRQWLLLCTACCC*REFYVC
Trigger: ACAGACATAAAATTCTCTTCAGCAGCAGCATGCAGT...ACACAGCAGCAGCCATTGTCTCTGCTCCTGACTGTGTGTGAGTGTATTCCAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR TCA 90 bp CCTTCTTCCAGCCCCAGGGGCTCTGCTTCCAGGTTTAGTCCATTTAGCTTCCTTATGGAATTGATTGATTaGCAATTCCAGATTCCAGCC +
Preference number: 2 (lower is better)
Translates to: PSSSPRGSASRFSPFSFLMELID*QFQIPA
Trigger: GGCTGGAATCTGGAATTGTCAATCAATCAATTCCAT...AAGGAAGCTAAATGGACTAAACCTGGAAGCAGAGCCCCTGGGGCTGGAAGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR GCA 90 bp AAAGTGAGGGCCTGGCCTTGGGTAACTAATGACAATGACAGAGCAGGGGCGATTATGTCAACTTTCAACTaGATGCTGCTGCTGAAGAGA +
Preference number: 2 (lower is better)
Translates to: KVRAWPWVTNDNDRAGAIMSTFN*MLLLKR
Trigger: TCTCTTCAGCAGCAGCATGCAGTTGAAAGTTGACAT...AATCGCCCCTGCTCTGTCATTGTCATTAGTTACCCAAGGCCAGGCCCTCACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR CCA 90 bp CCTCTACAGTGGCTGATTGTGAAATTAAGGAAGTGGTTAGCTTGGCTTCAGAAATGGCTCTGGCTGTCCTaGAACACACTCAGTAGACCA +
Preference number: 2 (lower is better)
Translates to: PLQWLIVKLRKWLAWLQKWLWLS*NTLSRP
Trigger: TGGTCTACTGAGTGTGTTCCAGGACAGCCAGAGCCA...TTTCTGAAGCCAAGCTAACCACTTCCTTAATTTCACAATCAGCCACTGTAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR TCA 90 bp GAGAATGAATGCTTGGAATACACTCACACACAGTCAGGAGCAGAGACAATGGCTTCTGGCAGAAACAAATaGAACCAAAGTCACTACCAT +
Preference number: 2 (lower is better)
Translates to: ENECLEYTHTQSGAETMASGRNK*NQSHYH
Trigger: ATGGTAGTGACTTTGGTTTCATTTGTTTCTGCCAGA...AGCCATTGTCTCTGCTCCTGACTGTGTGTGAGTGTATTCCAAGCATTCATTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR TCA 90 bp TCCAGGTTTAGTCCATTTAGCTTCCTTTCTGTCACCATGACAAACACTCTGACACAAGGACGGAGAGAATaGATGCTTGGAATACACTCA +
Preference number: 2 (lower is better)
Translates to: SRFSPFSFLSVTMTNTLTQGRRE*MLGIHS
Trigger: TGAGTGTATTCCAAGCATTCATTCTCTCCGTCCTTG...TGTCAGAGTGTTTGTCATGGTGACAGAAAGGAAGCTAAATGGACTAAACCTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR GCA 90 bp GCAAAGAGAATGGATGCTTGGACTATAGACATGCAGAGTCAAGGACAAAGAGAATCTGTAGTACTTAGCTaGTCTAACAAGCCATGTGCA +
Preference number: 2 (lower is better)
Translates to: AKRMDAWTIDMQSQGQRESVVLS*SNKPCA
Trigger: TGCACATGGCTTGTTAGAGCAGCTAAGTACTACAGA...TTCTCTTTGTCCTTGACTCTGCATGTCTATAGTCCAAGCATCCATTCTCTTTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR GCA 90 bp GTAGTAAAAAGCAATTTAATTGATCTTGGAAAAGACATCTGCCTTGCTTCTCACAGATCCACCTCCCTCTaGTTCCCAAGTGCTGGGATT +
Preference number: 2 (lower is better)
Translates to: VVKSNLIDLGKDICLASHRSTSL*FPSAGI
Trigger: AATCCCAGCACTTGGGAAGCAGAGGGAGGTGGATCT...GTGAGAAGCAAGGCAGATGTCTTTTCCAAGATCAATTAAATTGCTTTTTACTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR GCA 90 bp TCCAGGTTTAGTCCATTTAGCTTCCTTTCTGTCACCATGACAAACACTCTGACACTTGGAAAAGACATCTaGCTTGCTTCTCACATCAGA +
Preference number: 2 (lower is better)
Translates to: SRFSPFSFLSVTMTNTLTLGKDI*LASHIR
Trigger: TCTGATGTGAGAAGCAAGGCAGATGTCTTTTCCAAG...TGTCAGAGTGTTTGTCATGGTGACAGAAAGGAAGCTAAATGGACTAAACCTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR GCA 90 bp CCTCTACAGTGGCTGATTGTGAAATTAAGGAAGTGGTTAGCTTGGCTTCAGAAAGACGGAGAGAATGAATaGTTGGAATACACTCACACA +
Preference number: 2 (lower is better)
Translates to: PLQWLIVKLRKWLAWLQKDGENE*LEYTHT
Trigger: TGTGTGAGTGTATTCCAAGCATTCATTCTCTCCGTC...TTTCTGAAGCCAAGCTAACCACTTCCTTAATTTCACAATCAGCCACTGTAGAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR GCA 90 bp TCCAGGTTTAGTCCATTTAGCTTCCTTTCTGTCACCATGACAAACACTCTGACAGACAAAGAGAATGGATaGTTGGACTATAGACATGCA +
Preference number: 2 (lower is better)
Translates to: SRFSPFSFLSVTMTNTLTDKENG*LDYRHA
Trigger: TGCATGTCTATAGTCCAAGCATCCATTCTCTTTGTC...TGTCAGAGTGTTTGTCATGGTGACAGAAAGGAAGCTAAATGGACTAAACCTGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR TCA 72 bp CTTGGCTTCAGAAATAGGTCAGTGGAGTCGGGCTGGTaGAGGTCTTCCTCAGTCCCTTCTTCCAGCCCCAGG +
Preference number: 3 (lower is better)
Translates to: LGFRNRSVESGW*RSSSVPSSSPR
Trigger: CCTGGGGCTGGAAGAAGGGACTGAGGAAGACCTTCACCAGCCCGACTCCACTGACCTATTTCTGAAGCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR GCA 72 bp CCTCCCTCTGCTTCCCAAGTGCTGGGATTAAAGGCATaGACCACAGCTGACTGGCGACTGCTAGCTTCTTAC +
Preference number: 3 (lower is better)
Translates to: PPSASQVLGLKA*TTADWRLLASY
Trigger: GTAAGAAGCTAGCAGTCGCCAGTCAGCTGTGGTGCATGCCTTTAATCCCAGCACTTGGGAAGCAGAGGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR CAA 90 bp AACAACATCCTTTGCATTAGGAAATGGCCAGGGGACACTGAGGGCCAGCCTGGGAAGGAAGTGGTTAGCTaGGCTTCAGAAATAGGTCAG +
Preference number: 3 (lower is better)
Translates to: NNILCIRKWPGDTEGQPGKEVVS*ASEIGQ
Trigger: CTGACCTATTTCTGAAGCCAAGCTAACCACTTCCTT...CCCAGGCTGGCCCTCAGTGTCCCCTGGCCATTTCCTAATGCAAAGGATGTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR GCA 72 bp TGGACACTGGTAATGACCACTGGTAACAACATCCTTTaGATTAGGAAATGGCCAGGGGACACTGAGGGCCAG +
Preference number: 3 (lower is better)
Translates to: WTLVMTTGNNIL*IRKWPGDTEGQ
Trigger: CTGGCCCTCAGTGTCCCCTGGCCATTTCCTAATGCAAAGGATGTTGTTACCAGTGGTCATTACCAGTGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 72 bp AAGGAAGTGGTTAGCTTGGCTTCAGAAATAGGTCAGTaGAGTCGGGCTGGTGAAGGTCTTCCTCAGTCCCTT +
Preference number: 3 (lower is better)
Translates to: KEVVSLASEIGQ*SRAGEGLPQSL
Trigger: AAGGGACTGAGGAAGACCTTCACCAGCCCGACTCCACTGACCTATTTCTGAAGCCAAGCTAACCACTTCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 72 bp ATGACCACTGGTAACAACATCCTTTGCATTAGGAAATaGCCAGGGGACACTGAGGGCCAGCCTGGGTTCTAT +
Preference number: 3 (lower is better)
Translates to: MTTGNNILCIRK*PGDTEGQPGFY
Trigger: ATAGAACCCAGGCTGGCCCTCAGTGTCCCCTGGCCATTTCCTAATGCAAAGGATGTTGTTACCAGTGGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR TCA 72 bp CAGCGCAGGTTCACAGAGGAGCAGACACCCATCATTTaGACCAAGTCACAGGTCCTCTTTAAACTCATCCAA +
Preference number: 3 (lower is better)
Translates to: QRRFTEEQTPII*TKSQVLFKLIQ
Trigger: TTGGATGAGTTTAAAGAGGACCTGTGACTTGGTTCAAATGATGGGTGTCTGCTCCTCTGTGAACCTGCGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 72 bp TCAGTGGGAGTGGCACTATTAGGAGATATGGCATTCTaGAGCAGGTGTAGTCTTGGAGAAAGTGTGTCACTG +
Preference number: 3 (lower is better)
Translates to: SVGVALLGDMAF*SRCSLGESVSL
Trigger: CAGTGACACACTTTCTCCAAGACTACACCTGCTCCAGAATGCCATATCTCCTAATAGTGCCACTCCCACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 72 bp TGGAATACACTCACACACAGTCAGGAGCAGAGACAATaGCTGCTGCTGTGTGTGCCCTTAGCTATTGAGAAA +
Preference number: 3 (lower is better)
Translates to: WNTLTHSQEQRQ*LLLCVPLAIEK
Trigger: TTTCTCAATAGCTAAGGGCACACACAGCAGCAGCCATTGTCTCTGCTCCTGACTGTGTGTGAGTGTATTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR TCA 72 bp TGGACTATAGACATGCAGAGTCAAGGACGGAGAGAATaGATGCTTGGAATACACTCACACACAGTCAGGAGC +
Preference number: 3 (lower is better)
Translates to: WTIDMQSQGRRE*MLGIHSHTVRS
Trigger: GCTCCTGACTGTGTGTGAGTGTATTCCAAGCATTCATTCTCTCCGTCCTTGACTCTGCATGTCTATAGTCCA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR GCA 72 bp GGCACTCCATGCACATTCAGGAGCAAAGAGAATGGATaGTTGGACTATAGACATGCAGAGTCAAGGACAAAG +
Preference number: 3 (lower is better)
Translates to: GTPCTFRSKENG*LDYRHAESRTK
Trigger: CTTTGTCCTTGACTCTGCATGTCTATAGTCCAAGCATCCATTCTCTTTGCTCCTGAATGTGCATGGAGTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 72 bp AGACATGCAGAGTCAAGGACGGAGAGAATGAATGCTTaGAATACACTCACACACAGTCAGGAGCAGAGACAA +
Preference number: 3 (lower is better)
Translates to: RHAESRTERMNA*NTLTHSQEQRQ
Trigger: TTGTCTCTGCTCCTGACTGTGTGTGAGTGTATTCCAAGCATTCATTCTCTCCGTCCTTGACTCTGCATGTCT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 72 bp TTAGCAGAACAAATCTCAAAAGTGAGGGCCTGGCCTTaGGTAACTAATGACAATGACAGAGCAGGGGCGATT +
Preference number: 3 (lower is better)
Translates to: LAEQISKVRAWP*VTNDNDRAGAI
Trigger: AATCGCCCCTGCTCTGTCATTGTCATTAGTTACCCAAGGCCAGGCCCTCACTTTTGAGATTTGTTCTGCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR CAA 90 bp TCCAGGTTTAGTCCATTTAGCTTCCTTTCTGTCACCATGACAAACACTCTGACAGGATGGTGGTGGACTTaGCACTGGGTCTTAAAGTTG +
Preference number: 3 (lower is better)
Translates to: SRFSPFSFLSVTMTNTLTGWWWT*HWVLKL
Trigger: CAACTTTAAGACCCAGTGCAAAGTCCACCACCATCC...TGTCAGAGTGTTTGTCATGGTGACAGAAAGGAAGCTAAATGGACTAAACCTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 72 bp AGACATGCAGAGTCAAGGACAAAGAGAATGGATGCTTaGACTATAGACATGCAGAGTCAAGGACGGAGAGAA +
Preference number: 3 (lower is better)
Translates to: RHAESRTKRMDA*TIDMQSQGRRE
Trigger: TTCTCTCCGTCCTTGACTCTGCATGTCTATAGTCCAAGCATCCATTCTCTTTGTCCTTGACTCTGCATGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 72 bp TTATCCTTAGCAGAACAAATCTCAAAAGTGAGGGCCTaGCCTTGGGTAACTAATGACAATGACAGAGCAGGG +
Preference number: 3 (lower is better)
Translates to: LSLAEQISKVRA*PWVTNDNDRAG
Trigger: CCCTGCTCTGTCATTGTCATTAGTTACCCAAGGCCAGGCCCTCACTTTTGAGATTTGTTCTGCTAAGGATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CCA 72 bp CTCCATGCACATTCAGGAGCAAAGAGAATGGATGCTTaGACTATAGACATGCAGAGTCAAGGACAAAGAGAA +
Preference number: 3 (lower is better)
Translates to: LHAHSGAKRMDA*TIDMQSQGQRE
Trigger: TTCTCTTTGTCCTTGACTCTGCATGTCTATAGTCCAAGCATCCATTCTCTTTGCTCCTGAATGTGCATGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR CAA 90 bp CCTCTACAGTGGCTGATTGTGAAATTAAGGAAGTGGTTAGCTTGGCTTCAGAAAGGAGAGAATGAATGCTaGGAATACACTCACACACAG +
Preference number: 3 (lower is better)
Translates to: PLQWLIVKLRKWLAWLQKGENEC*EYTHTQ
Trigger: CTGTGTGTGAGTGTATTCCAAGCATTCATTCTCTCC...TTTCTGAAGCCAAGCTAACCACTTCCTTAATTTCACAATCAGCCACTGTAGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR TCA 72 bp GCTAGCTTCTTACTTTTGAAACTAATTCTTCAAACATaGCTGAGACTGACTCTCAGGATCCTGCTCAGCGCA +
Preference number: 3 (lower is better)
Translates to: ASFLLLKLILQT*LRLTLRILLSA
Trigger: TGCGCTGAGCAGGATCCTGAGAGTCAGTCTCAGTCATGTTTGAAGAATTAGTTTCAAAAGTAAGAAGCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR CAA 90 bp GAGAATGAATGCTTGGAATACACTCACACACAGTCAGGAGCAGAGACAATGGCTGTAAATACAAACTGCTaGGAAAACCAGAGTGAACAT +
Preference number: 3 (lower is better)
Translates to: ENECLEYTHTQSGAETMAVNTNC*ENQSEH
Trigger: ATGTTCACTCTGGTTTTCCAAGCAGTTTGTATTTAC...AGCCATTGTCTCTGCTCCTGACTGTGTGTGAGTGTATTCCAAGCATTCATTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR-3UTR CAA 90 bp AGACACCCATCATTTGAACCAAGTCACAGGTCCTCTTTAAACTCATCCAAAAAGAGGCAATGTGGTAGTTaGAAAGAAAATGGTTCCCAT +
Preference number: 3 (lower is better)
Translates to: RHPSFEPSHRSSLNSSKKRQCGS*KENGSH
Trigger: ATGGGAACCATTTTCTTTCAAACTACCACATTGCCT...CTTTTTGGATGAGTTTAAAGAGGACCTGTGACTTGGTTCAAATGATGGGTGTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR TCA 72 bp AACACTCTGACAAAAGCAACTGATGGAAGATGGAATTaGTTGATTGACAATTCCAGATTCCAGCCACATCTG +
Preference number: 3 (lower is better)
Translates to: NTLTKATDGRWN*LIDNSRFQPHL
Trigger: CAGATGTGGCTGGAATCTGGAATTGTCAATCAATCAATTCCATCTTCCATCAGTTGCTTTTGTCAGAGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS-3UTR CCA 90 bp CCTTCTTCCAGCCCCAGGGGCTCTGCTTCCAGGTTTAGTCCATTTAGCTTCCTTCCACACAGAGGCCTCTaGGGAGCCACAGAGACACCA +
Preference number: 4 (lower is better)
Translates to: PSSSPRGSASRFSPFSFLPHRGL*GATETP
Trigger: TGGTGTCTCTGTGGCTCCCCAGAGGCCTCTGTGTGG...AAGGAAGCTAAATGGACTAAACCTGGAAGCAGAGCCCCTGGGGCTGGAAGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS-3UTR GCA 90 bp CACATCTGCTGTAACATCAAGGCAGAAACACAAGGGCACTCCATGCACATTCAGACTCAGGATCACAGCTaGCACACAGAGGCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: HICCNIKAETQGHSMHIQTQDHS*HTEASG
Trigger: CCCAGAGGCCTCTGTGTGGCAGCTGTGATCCTGAGT...CTGAATGTGCATGGAGTGCCCTTGTGTTTCTGCCTTGATGTTACAGCAGATGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS-3UTR CCA 90 bp CCTCCCCCTCCTCCTCCTCCTTCTCCTTCTCCTTCTTTTCAGACAGGGTTTCTCGGTACACAGTCACCTTaGGCTCAGCTTTTAAGTTCA +
Preference number: 4 (lower is better)
Translates to: PPPPPPPSPSPSFQTGFLGTQSP*AQLLSS
Trigger: TGAACTTAAAAGCTGAGCCCAAGGTGACTGTGTACC...GAGAAACCCTGTCTGAAAAGAAGGAGAAGGAGAAGGAGGAGGAGGAGGGGGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS-3UTR TCA 90 bp GAGAATGAATGCTTGGAATACACTCACACACAGTCAGGAGCAGAGACAATGGCTCACGCTCCTTCCCATTaGAGTAGTGACACTCAGCCT +
Preference number: 4 (lower is better)
Translates to: ENECLEYTHTQSGAETMAHAPSH*SSDTQP
Trigger: AGGCTGAGTGTCACTACTTCAATGGGAAGGAGCGTG...AGCCATTGTCTCTGCTCCTGACTGTGTGTGAGTGTATTCCAAGCATTCATTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS-3UTR TCA 90 bp CACATCTGCTGTAACATCAAGGCAGAAACACAAGGGCACTCCATGCACATTCAGAGCACCATGAGACACTaGTCCTGCTCTCAGATTCCT +
Preference number: 4 (lower is better)
Translates to: HICCNIKAETQGHSMHIQSTMRH*SCSQIP
Trigger: AGGAATCTGAGAGCAGGATCAGTGTCTCATGGTGCT...CTGAATGTGCATGGAGTGCCCTTGTGTTTCTGCCTTGATGTTACAGCAGATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS-3UTR CCA 90 bp AGACACCCATCATTTGAACCAAGTCACAGGTCCTCTTTAAACTCATCCAAAAAGAACCCAGGCCCCATGTaGCATTCACTCCCACTGCCT +
Preference number: 4 (lower is better)
Translates to: RHPSFEPSHRSSLNSSKKNPGPM*HSLPLP
Trigger: AGGCAGTGGGAGTGAATGCCACATGGGGCCTGGGTT...CTTTTTGGATGAGTTTAAAGAGGACCTGTGACTTGGTTCAAATGATGGGTGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS-3UTR TCA 90 bp CACATCTGCTGTAACATCAAGGCAGAAACACAAGGGCACTCCATGCACATTCAGCTTCCTGGTTATAGATaGATCTGGTCACACTCCACA +
Preference number: 4 (lower is better)
Translates to: HICCNIKAETQGHSMHIQLPGYR*IWSHST
Trigger: TGTGGAGTGTGACCAGATTCATCTATAACCAGGAAG...CTGAATGTGCATGGAGTGCCCTTGTGTTTCTGCCTTGATGTTACAGCAGATGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS-3UTR GCA 90 bp CTATTAGGAGATATGGCATTCTGGAGCAGGTGTAGTCTTGGAGAAAGTGTGTCACAACAACTTGTTCTGTaGAGATGTGGACCGAGCCCT +
Preference number: 4 (lower is better)
Translates to: LLGDMAFWSRCSLGESVSQQLVL*RCGPSP
Trigger: AGGGCTCGGTCCACATCTGCACAGAACAAGTTGTTG...TGACACACTTTCTCCAAGACTACACCTGCTCCAGAATGCCATATCTCCTAATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS-3UTR CCA 90 bp AGACACCCATCATTTGAACCAAGTCACAGGTCCTCTTTAAACTCATCCAAAAAGTGTTCTGTGCAGATGTaGACCGAGCCCTCCACTCCA +
Preference number: 4 (lower is better)
Translates to: RHPSFEPSHRSSLNSSKKCSVQM*TEPSTP
Trigger: TGGAGTGGAGGGCTCGGTCCACATCTGCACAGAACA...CTTTTTGGATGAGTTTAAAGAGGACCTGTGACTTGGTTCAAATGATGGGTGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CAA 72 bp ACAGTGGCTGATTGTGAAATTAAGGAAGTGGTTAGCTaGGCTTCAGAAATAGGTCAGTGGAGTCGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: TVADCEIKEVVS*ASEIGQWSRAG
Trigger: ACCAGCCCGACTCCACTGACCTATTTCTGAAGCCAAGCTAACCACTTCCTTAATTTCACAATCAGCCACTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
3UTR CAA 72 bp ACTCCATGCACATTCAGGAGCAAAGAGAATGGATGCTaGGACTATAGACATGCAGAGTCAAGGACAAAGAGA +
Preference number: 4 (lower is better)
Translates to: TPCTFRSKENGC*DYRHAESRTKR
Trigger: TCTCTTTGTCCTTGACTCTGCATGTCTATAGTCCAAGCATCCATTCTCTTTGCTCCTGAATGTGCATGGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS-3UTR GCA 90 bp CCTCTACAGTGGCTGATTGTGAAATTAAGGAAGTGGTTAGCTTGGCTTCAGAAAGGTCATAGTTATTTCTaGACCTGTCTACTGAGGCAC +
Preference number: 4 (lower is better)
Translates to: PLQWLIVKLRKWLAWLQKGHSYF*TCLLRH
Trigger: GTGCCTCAGTAGACAGGTGCAGAAATAACTATGACC...TTTCTGAAGCCAAGCTAACCACTTCCTTAATTTCACAATCAGCCACTGTAGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS-3UTR CCA 90 bp GCAAAGAGAATGGATGCTTGGACTATAGACATGCAGAGTCAAGGACAAAGAGAATCCAGCATGTCCTTCTaGGTGTTCAAGTACTCAACT +
Preference number: 4 (lower is better)
Translates to: AKRMDAWTIDMQSQGQRESSMSF*VFKYST
Trigger: AGTTGAGTACTTGAACACCCAGAAGGACATGCTGGA...TTCTCTTTGTCCTTGACTCTGCATGTCTATAGTCCAAGCATCCATTCTCTTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS TCA 90 bp CAGGCCCCATGTGGCATTCACTCCCACTGCCTGTCAATCTGGATGTaGAACTTTCAGCTCCTTCACCAGCACCATGAGACACTGATCCTG +
Preference number: 5 (lower is better)
Translates to: QAPCGIHSHCLSIWM*NFQLLHQHHETLIL
Trigger: CAGGATCAGTGTCTCATGGTGCTGGTGAAGGAGCTGAAAGTTTCACATCCAGATTGACAGGCAGTGGGAGTGAATGCCACATGGGGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS TCA 90 bp TTGCAGGGTACACAGTCACCTTGGGCTCAGCTTTTAAGTTCAACATaGAGATATCCACAAGGTCATAGTTATTTCTGCACCTGTCTACTG +
Preference number: 5 (lower is better)
Translates to: LQGTQSPWAQLLSST*RYPQGHSYFCTCLL
Trigger: CAGTAGACAGGTGCAGAAATAACTATGACCTTGTGGATATCTTCATGTTGAACTTAAAAGCTGAGCCCAAGGTGACTGTGTACCCTGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS GCA 72 bp CGCCATGCCCATGACTCCGCTCAACAACTTGTTCTGTaGAGATGTGGACCGAGCCCTCCACTCCACTGTGAC +
Preference number: 6 (lower is better)
Translates to: RHAHDSAQQLVL*RCGPSPPLHCD
Trigger: GTCACAGTGGAGTGGAGGGCTCGGTCCACATCTGCACAGAACAAGTTGTTGAGCGGAGTCATGGGCATGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS TCA 72 bp TGTGGCATTCACTCCCACTGCCTGTCAATCTGGATGTaGAACTTTCAGCTCCTTCACCAGCACCATGAGACA +
Preference number: 6 (lower is better)
Translates to: CGIHSHCLSIWM*NFQLLHQHHET
Trigger: TGTCTCATGGTGCTGGTGAAGGAGCTGAAAGTTTCACATCCAGATTGACAGGCAGTGGGAGTGAATGCCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS TCA 72 bp ATCCACAAGGTCATAGTTATTTCTGCACCTGTCTACTaGGGCACGATAATTGTCCAGCATGTCCTTCTGGGT +
Preference number: 6 (lower is better)
Translates to: IHKVIVISAPVY*GTIIVQHVLLG
Trigger: ACCCAGAAGGACATGCTGGACAATTATCGTGCCTCAGTAGACAGGTGCAGAAATAACTATGACCTTGTGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10
CDS TCA 72 bp ACACAGTCACCTTGGGCTCAGCTTTTAAGTTCAACATaGAGATATCCACAAGGTCATAGTTATTTCTGCACC +
Preference number: 6 (lower is better)
Translates to: TQSPWAQLLSST*RYPQGHSYFCT
Trigger: GGTGCAGAAATAACTATGACCTTGTGGATATCTTCATGTTGAACTTAAAAGCTGAGCCCAAGGTGACTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050325.10