Pregenerated sensors for H2-EB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060586Ensembl transcript IDs: ENSMUST00000074557.11, ENSMUST00000235530.2, ENSMUST00000236232.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGAGCACAGATCTCCAGGGTGGAGAATCAGGAGGAGCCAGGTCCTaGAAGAGCAGTGTCTCTGGAGGGATGTGGGCCAAGCAGGACATG | + |
|
Preference number: 1 (lower is better) Translates to: RSTDLQGGESGGARS*KSSVSGGMWAKQDM Trigger: CATGTCCTGCTTGGCCCACATCCCTCCAGAGACACTGCTCTTCCAGGACCTGGCTCCTCCTGATTCTCCACCCTGGAGATCTGTGCTCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| 3UTR GCA 90 bp | AAAGGGGACAGGAGATGTGAAGAGTGGGGCCTCTGTCCTGGGAGCTaGAAGGCCTGGGTCAGGGATAAACAGCCATCAGGAGCACAGATC | + |
|
Preference number: 1 (lower is better) Translates to: KGDRRCEEWGLCPGS*KAWVRDKQPSGAQI Trigger: GATCTGTGCTCCTGATGGCTGTTTATCCCTGACCCAGGCCTTGCAGCTCCCAGGACAGAGGCCCCACTCTTCACATCTCCTGTCCCCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| 3UTR CCA 90 bp | GGGTGGAGAATCAGGAGGAGCCAGGTCCTGGAAGAGCAGTGTCTCTaGAGGGATGTGGGCCAAGCAGGACATGTTTTCATGGCATGGAGA | + |
|
Preference number: 1 (lower is better) Translates to: GWRIRRSQVLEEQCL*RDVGQAGHVFMAWR Trigger: TCTCCATGCCATGAAAACATGTCCTGCTTGGCCCACATCCCTCCAGAGACACTGCTCTTCCAGGACCTGGCTCCTCCTGATTCTCCACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| 3UTR TCA 90 bp | ATCTATTGTCCTGCCACATCTGCTGAGAGGCTGAGTTTGTTTTCCTaGGGAGATTCTGACAAGCCAGGAGAACCTGGCATAGTAGGGGAT | + |
|
Preference number: 1 (lower is better) Translates to: IYCPATSAERLSLFS*GDSDKPGEPGIVGD Trigger: ATCCCCTACTATGCCAGGTTCTCCTGGCTTGTCAGAATCTCCTCAGGAAAACAAACTCAGCCTCTCAGCAGATGTGGCAGGACAATAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| 3UTR TCA 90 bp | TTCAGGAGCCCAGTTCATGTAGCTGCTGGCATCTACAATTATGCATaGACAGTGTCTTATAGTGGGTCCTGTCTTTCTTTTTACTGTTTC | + |
|
Preference number: 1 (lower is better) Translates to: FRSPVHVAAGIYNYA*TVSYSGSCLSFYCF Trigger: GAAACAGTAAAAAGAAAGACAGGACCCACTATAAGACACTGTTCATGCATAATTGTAGATGCCAGCAGCTACATGAACTGGGCTCCTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| 3UTR-3UTR GCA 90 bp | ACAGCCATCAGGAGCACAGATCTCCAGGGTGGAGAATCAGGAGGAGCCAGGTCCAGACTGGCTCAGAAGTaGCAGACAAAAGGCAAGGGA | + |
|
Preference number: 2 (lower is better) Translates to: TAIRSTDLQGGESGGARSRLAQK*QTKGKG Trigger: TCCCTTGCCTTTTGTCTGGCACTTCTGAGCCAGTCT...GGACCTGGCTCCTCCTGATTCTCCACCCTGGAGATCTGTGCTCCTGATGGCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| 3UTR-3UTR CCA 90 bp | AAGCATATGACAGCAGACTGGCTCAGAAGTGCCAGACAAAAGGCAAGGGACAAAGGGAGCTGCAAGGCCTaGGTCAGGGATAAACAGCCA | + |
|
Preference number: 2 (lower is better) Translates to: KHMTADWLRSARQKARDKGSCKA*VRDKQP Trigger: TGGCTGTTTATCCCTGACCCAGGCCTTGCAGCTCCC...TTTGTCCCTTGCCTTTTGTCTGGCACTTCTGAGCCAGTCTGCTGTCATATGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| 3UTR-3UTR CCA 90 bp | AAGCATATGACAGCAGACTGGCTCAGAAGTGCCAGACAAAAGGCAAGGGACAAAAGGAGATGTGAAGAGTaGGGCCTCTGTCCTGGGAGC | + |
|
Preference number: 2 (lower is better) Translates to: KHMTADWLRSARQKARDKRRCEE*GLCPGS Trigger: GCTCCCAGGACAGAGGCCCCACTCTTCACATCTCCT...TTTGTCCCTTGCCTTTTGTCTGGCACTTCTGAGCCAGTCTGCTGTCATATGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| 3UTR-3UTR CCA 90 bp | AAAGCATATGACAGCAGACTGGCTCAGAAGTGCCAGACAAAAGGCAAGGGACAACACAGATCTCCAGGGTaGAGAATCAGGAGGAGCCAG | + |
|
Preference number: 2 (lower is better) Translates to: KAYDSRLAQKCQTKGKGQHRSPG*RIRRSQ Trigger: CTGGCTCCTCCTGATTCTCCACCCTGGAGATCTGTG...TTGTCCCTTGCCTTTTGTCTGGCACTTCTGAGCCAGTCTGCTGTCATATGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| 3UTR-3UTR CCA 90 bp | TCAGATTCAAAATGTAAACATTGGACCTTCATCAGAAACTTTGTCTTGGTCTCAGTGGGGCCTCTGTCCTaGGAGCTGCAAGGCCTGGGT | + |
|
Preference number: 2 (lower is better) Translates to: SDSKCKHWTFIRNFVLVSVGPLS*ELQGLG Trigger: ACCCAGGCCTTGCAGCTCCCAGGACAGAGGCCCCAC...TGAGACCAAGACAAAGTTTCTGATGAAGGTCCAATGTTTACATTTTGAATCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| 3UTR-3UTR CCA 90 bp | TCAGATTCAAAATGTAAACATTGGACCTTCATCAGAAACTTTGTCTTGGTCTCAGGAGGAGCCAGGTCCTaGAAGAGCAGTGTCTCTGGA | + |
|
Preference number: 2 (lower is better) Translates to: SDSKCKHWTFIRNFVLVSGGARS*KSSVSG Trigger: TCCAGAGACACTGCTCTTCCAGGACCTGGCTCCTCC...TGAGACCAAGACAAAGTTTCTGATGAAGGTCCAATGTTTACATTTTGAATCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| 3UTR-3UTR TCA 90 bp | TCAGATTCAAAATGTAAACATTGGACCTTCATCAGAAACTTTGTCTTGGTCTCAACTGTTTCTTCTGCTTaGAACTCTATGAAGCAGATG | + |
|
Preference number: 2 (lower is better) Translates to: SDSKCKHWTFIRNFVLVSTVSSA*NSMKQM Trigger: CATCTGCTTCATAGAGTTTCAAGCAGAAGAAACAGT...TGAGACCAAGACAAAGTTTCTGATGAAGGTCCAATGTTTACATTTTGAATCTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| 3UTR CCA 72 bp | GCCAGGTCCTGGAAGAGCAGTGTCTCTGGAGGGATGTaGGCCAAGCAGGACATGTTTTCATGGCATGGAGAC | + |
|
Preference number: 3 (lower is better) Translates to: ARSWKSSVSGGM*AKQDMFSWHGD Trigger: GTCTCCATGCCATGAAAACATGTCCTGCTTGGCCCACATCCCTCCAGAGACACTGCTCTTCCAGGACCTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| 3UTR CCA 72 bp | ATCAGGAGGAGCCAGGTCCTGGAAGAGCAGTGTCTCTaGAGGGATGTGGGCCAAGCAGGACATGTTTTCATG | + |
|
Preference number: 3 (lower is better) Translates to: IRRSQVLEEQCL*RDVGQAGHVFM Trigger: CATGAAAACATGTCCTGCTTGGCCCACATCCCTCCAGAGACACTGCTCTTCCAGGACCTGGCTCCTCCTGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| 3UTR TCA 72 bp | CCTGCCACATCTGCTGAGAGGCTGAGTTTGTTTTCCTaGGGAGATTCTGACAAGCCAGGAGAACCTGGCATA | + |
|
Preference number: 3 (lower is better) Translates to: PATSAERLSLFS*GDSDKPGEPGI Trigger: TATGCCAGGTTCTCCTGGCTTGTCAGAATCTCCTCAGGAAAACAAACTCAGCCTCTCAGCAGATGTGGCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| 3UTR-3UTR CAA 90 bp | CAGCTTTCCTTTCAGGAGCCCAGTTCATGTAGCTGCTGGCATCTACAATTATGCTACTGTTTCTTCTGCTaGAAACTCTATGAAGCAGAT | + |
|
Preference number: 3 (lower is better) Translates to: QLSFQEPSSCSCWHLQLCYCFFC*KLYEAD Trigger: ATCTGCTTCATAGAGTTTCAAGCAGAAGAAACAGTA...GCATAATTGTAGATGCCAGCAGCTACATGAACTGGGCTCCTGAAAGGAAAGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| 3UTR TCA 72 bp | CCAGTTCATGTAGCTGCTGGCATCTACAATTATGCATaGACAGTGTCTTATAGTGGGTCCTGTCTTTCTTTT | + |
|
Preference number: 3 (lower is better) Translates to: PVHVAAGIYNYA*TVSYSGSCLSF Trigger: AAAAGAAAGACAGGACCCACTATAAGACACTGTTCATGCATAATTGTAGATGCCAGCAGCTACATGAACTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| 3UTR-3UTR CAA 90 bp | ATTTATTTCTTATACAATAACTCCCATGCTTATTATGTGTGCCTTCTCCCAGCCATCAGAAACTTTGTCTaGGTCTCATTCTTCTCTCGC | + |
|
Preference number: 3 (lower is better) Translates to: IYFLYNNSHAYYVCLLPAIRNFV*VSFFSR Trigger: GCGAGAGAAGAATGAGACCAAGACAAAGTTTCTGAT...GGCTGGGAGAAGGCACACATAATAAGCATGGGAGTTATTGTATAAGAAATAAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| CDS-3UTR CCA 90 bp | GGAGCCAGGTCCTGGAAGAGCAGTGTCTCTGGAGGGATGTGGGCCAAGCAGGACTCTGACCAAAGCCACTaGAGGGCTCAGCACTGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: GARSWKSSVSGGMWAKQDSDQSH*RAQHCQ Trigger: CTGACAGTGCTGAGCCCTCCAGTGGCTTTGGTCAGA...GTCCTGCTTGGCCCACATCCCTCCAGAGACACTGCTCTTCCAGGACCTGGCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| CDS-3UTR GCA 90 bp | AAACAGCCATCAGGAGCACAGATCTCCAGGGTGGAGAATCAGGAGGAGCCAGGTACCTCGGCCCGCTTTTaGTCCAGGAACTCCGGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: KQPSGAQISRVENQEEPGTSARF*SRNSGW Trigger: CCAGCCGGAGTTCCTGGAGCAAAAGCGGGCCGAGGT...ACCTGGCTCCTCCTGATTCTCCACCCTGGAGATCTGTGCTCCTGATGGCTGTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| CDS-3UTR GCA 90 bp | GTGTCTCTGGAGGGATGTGGGCCAAGCAGGACATGTTTTCATGGCATGGAGACAACCTCGGCCCGCTTTTaGTCCAGGAACTCCGGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: VSLEGCGPSRTCFHGMETTSARF*SRNSGW Trigger: CCAGCCGGAGTTCCTGGAGCAAAAGCGGGCCGAGGT...TGTCTCCATGCCATGAAAACATGTCCTGCTTGGCCCACATCCCTCCAGAGACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| CDS-3UTR CCA 90 bp | AGCCAGGTCCTGGAAGAGCAGTGTCTCTGGAGGGATGTGGGCCAAGCAGGACATGCTCAGGAGTCCTGTTaGCTGAAGTCCAGACTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: SQVLEEQCLWRDVGQAGHAQESC*LKSRLS Trigger: GGACAGTCTGGACTTCAGCCAACAGGACTCCTGAGC...ATGTCCTGCTTGGCCCACATCCCTCCAGAGACACTGCTCTTCCAGGACCTGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 |
||
| CDS-3UTR GCA 90 bp | CAGTGTCTCTGGAGGGATGTGGGCCAAGCAGGACATGTTTTCATGGCATGGAGACAACAGGATCACAGCTaGCACACAGGGAACTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: QCLWRDVGQAGHVFMAWRQQDHS*HTGNSG Trigger: CCCAGAGTTCCCTGTGTGGCAGCTGTGATCCTGTTG...TCTCCATGCCATGAAAACATGTCCTGCTTGGCCCACATCCCTCCAGAGACACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000235530.2 ENSMUST00000236232.2 |
||
| CDS-3UTR CCA 90 bp | CAGTGTCTCTGGAGGGATGTGGGCCAAGCAGGACATGTTTTCATGGCATGGAGAGGACCCCCTGAGACTTaGAGCTTTGAGCCCAAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: QCLWRDVGQAGHVFMAWRGPPET*SFEPKE Trigger: TTCCTTGGGCTCAAAGCTCCAAGTCTCAGGGGGTCC...TCTCCATGCCATGAAAACATGTCCTGCTTGGCCCACATCCCTCCAGAGACACTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074557.11 |
||
| CDS-3UTR CCA 90 bp | GAGCCAGGTCCTGGAAGAGCAGTGTCTCTGGAGGGATGTGGGCCAAGCAGGACAAGGAAGCCAAAGGTTTaGAGGGTTTTAGCCCAAATC | + |
|
Preference number: 4 (lower is better) Translates to: EPGPGRAVSLEGCGPSRTRKPKV*RVLAQI Trigger: GATTTGGGCTAAAACCCTCCAAACCTTTGGCTTCCT...TGTCCTGCTTGGCCCACATCCCTCCAGAGACACTGCTCTTCCAGGACCTGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074557.11 |
||
| CDS-3UTR CCA 90 bp | GGAGCCAGGTCCTGGAAGAGCAGTGTCTCTGGAGGGATGTGGGCCAAGCAGGACTGTTCTGTGCAGATGTaGATTGTGCTTCTGAGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: GARSWKSSVSGGMWAKQDCSVQM*IVLLRK Trigger: CTTTCTCAGAAGCACAATCCACATCTGCACAGAACA...GTCCTGCTTGGCCCACATCCCTCCAGAGACACTGCTCTTCCAGGACCTGGCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074557.11 |
||
| CDS-3UTR TCA 90 bp | CAGTGTCTCTGGAGGGATGTGGGCCAAGCAGGACATGTTTTCATGGCATGGAGAAGGAGTCCTGTTGGCTaGAGTCCAGACTGTCCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: QCLWRDVGQAGHVFMAWRRSPVG*SPDCPF Trigger: GAAAGGACAGTCTGGACTTCAGCCAACAGGACTCCT...TCTCCATGCCATGAAAACATGTCCTGCTTGGCCCACATCCCTCCAGAGACACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 |
||
| CDS-3UTR CCA 90 bp | AAGCATATGACAGCAGACTGGCTCAGAAGTGCCAGACAAAAGGCAAGGGACAAAGCTCAGGAGTCCTGTTaGCTGAAGTCCAGACTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: KHMTADWLRSARQKARDKAQESC*LKSRLS Trigger: GGACAGTCTGGACTTCAGCCAACAGGACTCCTGAGC...TTTGTCCCTTGCCTTTTGTCTGGCACTTCTGAGCCAGTCTGCTGTCATATGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 |
||
| CDS-3UTR CCA 90 bp | CCCAGCTTTCCTTTCAGGAGCCCAGTTCATGTAGCTGCTGGCATCTACAATTATTCTGACCAAAGCCACTaGAGGGCTCAGCACTGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: PSFPFRSPVHVAAGIYNYSDQSH*RAQHCQ Trigger: CTGACAGTGCTGAGCCCTCCAGTGGCTTTGGTCAGA...ATAATTGTAGATGCCAGCAGCTACATGAACTGGGCTCCTGAAAGGAAAGCTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| CDS-3UTR GCA 90 bp | TCTCTGGAGGGATGTGGGCCAAGCAGGACATGTTTTCATGGCATGGAGACACGGCAACATCTTGTTCTGTaGAGATGTGGATTGTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: SLEGCGPSRTCFHGMETRQHLVL*RCGLCF Trigger: GAAGCACAATCCACATCTGCACAGAACAAGATGTTG...CCGTGTCTCCATGCCATGAAAACATGTCCTGCTTGGCCCACATCCCTCCAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074557.11 |
||
| CDS-3UTR GCA 90 bp | CCCAGCTTTCCTTTCAGGAGCCCAGTTCATGTAGCTGCTGGCATCTACAATTATTGCAGATGTGGATTGTaGTTTCCACTCGACCGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: PSFPFRSPVHVAAGIYNYCRCGL*FPLDRD Trigger: GTCACGGTCGAGTGGAAAGCACAATCCACATCTGCA...ATAATTGTAGATGCCAGCAGCTACATGAACTGGGCTCCTGAAAGGAAAGCTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| CDS-3UTR GCA 90 bp | CCCGCCGCTTTAGGTTCAGATTCAAAATGTAAACATTGGACCTTCATCAGAAACCAACAGGATCACAGCTaGCACACAGGGAACTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: PAALGSDSKCKHWTFIRNQQDHS*HTGNSG Trigger: CCCAGAGTTCCCTGTGTGGCAGCTGTGATCCTGTTG...GTTTCTGATGAAGGTCCAATGTTTACATTTTGAATCTGAACCTAAAGCGGCGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| CDS-3UTR GCA 90 bp | CAGTGTCTCTGGAGGGATGTGGGCCAAGCAGGACATGTTTTCATGGCATGGAGACAACATCTTGTTCTGTaGAGATGTGGATTGTGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: QCLWRDVGQAGHVFMAWRQHLVL*RCGLCF Trigger: AAAGCACAATCCACATCTGCACAGAACAAGATGTTG...TCTCCATGCCATGAAAACATGTCCTGCTTGGCCCACATCCCTCCAGAGACACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| CDS-3UTR TCA 90 bp | CAGATTCAAAATGTAAACATTGGACCTTCATCAGAAACTTTGTCTTGGTCTCATAGGAGTCCTGTTGGCTaGAGTCCAGACTGTCCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: QIQNVNIGPSSETLSWSHRSPVG*SPDCPF Trigger: GAAAGGACAGTCTGGACTTCAGCCAACAGGACTCCT...ATGAGACCAAGACAAAGTTTCTGATGAAGGTCCAATGTTTACATTTTGAATCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| CDS CCA 90 bp | CTTTCCAGAAGCCGCACGCGGTCTGGAGTCTCTGACCAAAGCCACTaGAGGGCTCAGCACTGTCAGCAACAGGATCACAGCTGCCACACA | + |
|
Preference number: 5 (lower is better) Translates to: LSRSRTRSGVSDQSH*RAQHCQQQDHSCHT Trigger: TGTGTGGCAGCTGTGATCCTGTTGCTGACAGTGCTGAGCCCTCCAGTGGCTTTGGTCAGAGACTCCAGACCGCGTGCGGCTTCTGGAAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236232.2 |
||
| CDS-3UTR CAA 90 bp | GCTGCAAGGCCTGGGTCAGGGATAAACAGCCATCAGGAGCACAGATCTCCAGGGAGCTCAGGAGTCCTGTaGGCTGAAGTCCAGACTGTC | + |
|
Preference number: 5 (lower is better) Translates to: AARPGSGINSHQEHRSPGSSGVL*AEVQTV Trigger: GACAGTCTGGACTTCAGCCAACAGGACTCCTGAGCT...CCCTGGAGATCTGTGCTCCTGATGGCTGTTTATCCCTGACCCAGGCCTTGCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 |
||
| CDS-3UTR CAA 90 bp | GCTGCAAGGCCTGGGTCAGGGATAAACAGCCATCAGGAGCACAGATCTCCAGGGCTGAGACTTGGAGCTTaGAGCCCAAGGAAGAAGCGT | + |
|
Preference number: 5 (lower is better) Translates to: AARPGSGINSHQEHRSPGLRLGA*SPRKKR Trigger: ACGCTTCTTCCTTGGGCTCAAAGCTCCAAGTCTCAG...CCCTGGAGATCTGTGCTCCTGATGGCTGTTTATCCCTGACCCAGGCCTTGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074557.11 |
||
| CDS-3UTR CAA 90 bp | TCTCTGGAGGGATGTGGGCCAAGCAGGACATGTTTTCATGGCATGGAGACACGGAGCTCAGGAGTCCTGTaGGCTGAAGTCCAGACTGTC | + |
|
Preference number: 5 (lower is better) Translates to: SLEGCGPSRTCFHGMETRSSGVL*AEVQTV Trigger: GACAGTCTGGACTTCAGCCAACAGGACTCCTGAGCT...CCGTGTCTCCATGCCATGAAAACATGTCCTGCTTGGCCCACATCCCTCCAGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074557.11 ENSMUST00000235530.2 |
||
| CDS CCA 90 bp | ACAGTATTCCAAAAACCATGGTCTGGAGTCTCTGACCAAAGCCACTaGAGGGCTCAGCACTGTCAGCAACAGGATCACAGCTGCCACACA | + |
|
Preference number: 5 (lower is better) Translates to: TVFQKPWSGVSDQSH*RAQHCQQQDHSCHT Trigger: TGTGTGGCAGCTGTGATCCTGTTGCTGACAGTGCTGAGCCCTCCAGTGGCTTTGGTCAGAGACTCCAGACCATGGTTTTTGGAATACTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| CDS CCA 72 bp | AGCCGCACGCGGTCTGGAGTCTCTGACCAAAGCCACTaGAGGGCTCAGCACTGTCAGCAACAGGATCACAGC | + |
|
Preference number: 6 (lower is better) Translates to: SRTRSGVSDQSH*RAQHCQQQDHS Trigger: GCTGTGATCCTGTTGCTGACAGTGCTGAGCCCTCCAGTGGCTTTGGTCAGAGACTCCAGACCGCGTGCGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236232.2 |
||
| CDS CCA 72 bp | CCCAAATCCCATTTCCACTCCGGACCCCCTGAGACTTaGAGCTTTGAGCCCAAGGAAGAAGCGTGTTCTAGA | + |
|
Preference number: 6 (lower is better) Translates to: PKSHFHSGPPET*SFEPKEEACSR Trigger: TCTAGAACACGCTTCTTCCTTGGGCTCAAAGCTCCAAGTCTCAGGGGGTCCGGAGTGGAAATGGGATTTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074557.11 |
||
| CDS CCA 72 bp | CAAAAACCATGGTCTGGAGTCTCTGACCAAAGCCACTaGAGGGCTCAGCACTGTCAGCAACAGGATCACAGC | + |
|
Preference number: 6 (lower is better) Translates to: QKPWSGVSDQSH*RAQHCQQQDHS Trigger: GCTGTGATCCTGTTGCTGACAGTGCTGAGCCCTCCAGTGGCTTTGGTCAGAGACTCCAGACCATGGTTTTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000235530.2 |
||
| CDS CAA 72 bp | CCCATTTCCACTCCGGACCCCCTGAGACTTGGAGCTTaGAGCCCAAGGAAGAAGCGTGTTCTAGAAGATCTG | + |
|
Preference number: 6 (lower is better) Translates to: PISTPDPLRLGA*SPRKKRVLEDL Trigger: CAGATCTTCTAGAACACGCTTCTTCCTTGGGCTCAAAGCTCCAAGTCTCAGGGGGTCCGGAGTGGAAATGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074557.11 |
||
| CDS CAA 72 bp | ATGTGGATTGTGCTTCTGAGAAAGGAAGCCAAAGGTTaGGAGGGTTTTAGCCCAAATCCCATTTCCACTCCG | + |
|
Preference number: 6 (lower is better) Translates to: MWIVLLRKEAKG*EGFSPNPISTP Trigger: CGGAGTGGAAATGGGATTTGGGCTAAAACCCTCCAAACCTTTGGCTTCCTTTCTCAGAAGCACAATCCACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074557.11 |
||