Pregenerated sensors for H2-EA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036322

Ensembl transcript IDs: ENSMUST00000134042.3, ENSMUST00000235482.2

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	GAGAACCCCAGCCAGACATTAGATCAGAGAACCTGCCGCCATTCTTaGGGCTTAATGCTGGAAACTGAAGAAGATGAGGTCTCCGCTGAG	+
Preference number: 1 (lower is better) Translates to: ENPSQTLDQRTCRHS*GLMLETEEDEVSAE Trigger: CTCAGCGGAGACCTCATCTTCTTCAGTTTCCAGCATTAAGCCTCAAGAATGGCGGCAGGTTCTCTGATCTAATGTCTGGCTGGGGTTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
3UTR TCA 90 bp	GATGACTCCATTCTCAGAAAGTTCCACAGCGGAGGAAGAACTTTGTaGTATTTGTCACAGAGGAATTATTATAAATGGTGGAAGATAGAA	+
Preference number: 1 (lower is better) Translates to: DDSILRKFHSGGRTL*YLSQRNYYKWWKIE Trigger: TTCTATCTTCCACCATTTATAATAATTCCTCTGTGACAAATATCACAAAGTTCTTCCTCCGCTGTGGAACTTTCTGAGAATGGAGTCATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
3UTR-3UTR TCA 90 bp	AGGTGGGAGATGGAGAACCCCAGCCAGACATTAGATCAGAGAACCTGCCGCCATAGGTCTCCGCTGAGATaGACAACTGAAAGGGGTAGC	+
Preference number: 2 (lower is better) Translates to: RWEMENPSQTLDQRTCRHRSPLR*TTERGS Trigger: GCTACCCCTTTCAGTTGTTCATCTCAGCGGAGACCT...ATGGCGGCAGGTTCTCTGATCTAATGTCTGGCTGGGGTTCTCCATCTCCCACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
3UTR-3UTR TCA 90 bp	ATAGAATATAGATACAGGTGGGAGATGGAGAACCCCAGCCAGACATTAGATCAGTCACTGAACTTTAACTaGAGGCATTGCCTCCAGGTA	+
Preference number: 2 (lower is better) Translates to: IEYRYRWEMENPSQTLDQSLNFN*RHCLQV Trigger: TACCTGGAGGCAATGCCTTCAGTTAAAGTTCAGTGA...CTGATCTAATGTCTGGCTGGGGTTCTCCATCTCCCACCTGTATCTATATTCTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
3UTR-3UTR TCA 90 bp	TTGGAGAAGATGACTCCATTCTCAGAAAGTTCCACAGCGGAGGAAGAACTTTGTAGCAAGTTTCTTCACTaGACTTTAACTGAAGGCATT	+
Preference number: 2 (lower is better) Translates to: LEKMTPFSESSTAEEELCSKFLH*TLTEGI Trigger: AATGCCTTCAGTTAAAGTTCAGTGAAGAAACTTGCT...ACAAAGTTCTTCCTCCGCTGTGGAACTTTCTGAGAATGGAGTCATCTTCTCCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
3UTR TCA 72 bp	AGCCAGACATTAGATCAGAGAACCTGCCGCCATTCTTaGGGCTTAATGCTGGAAACTGAAGAAGATGAGGTC	+
Preference number: 3 (lower is better) Translates to: SQTLDQRTCRHS*GLMLETEEDEV Trigger: GACCTCATCTTCTTCAGTTTCCAGCATTAAGCCTCAAGAATGGCGGCAGGTTCTCTGATCTAATGTCTGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR TCA 90 bp	CAGGTGGGAGATGGAGAACCCCAGCCAGACATTAGATCAGAGAACCTGCCGCCATTAGCCAGTGCACCCTaGGCCTCAAAGCTGGCAAAC	+
Preference number: 4 (lower is better) Translates to: QVGDGEPQPDIRSENLPPLASAP*ASKLAN Trigger: GTTTGCCAGCTTTGAGGCTCAGGGTGCACTGGCTAA...TGGCGGCAGGTTCTCTGATCTAATGTCTGGCTGGGGTTCTCCATCTCCCACCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR CCA 90 bp	CAGGTGGGAGATGGAGAACCCCAGCCAGACATTAGATCAGAGAACCTGCCGCCACTTCAAGTCTCCAGATaGTCTCTGACTTTTCAATGT	+
Preference number: 4 (lower is better) Translates to: QVGDGEPQPDIRSENLPPLQVSR*SLTFQC Trigger: ACATTGAAAAGTCAGAGACCATCTGGAGACTTGAAG...TGGCGGCAGGTTCTCTGATCTAATGTCTGGCTGGGGTTCTCCATCTCCCACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR CCA 90 bp	TTGGAGAAGATGACTCCATTCTCAGAAAGTTCCACAGCGGAGGAAGAACTTTGTCCTCTGGGGCCACGTTaGCATCTGGAGTGTTGTTGG	+
Preference number: 4 (lower is better) Translates to: LEKMTPFSESSTAEEELCPLGPR*HLECCW Trigger: CCAACAACACTCCAGATGCCAACGTGGCCCCAGAGG...ACAAAGTTCTTCCTCCGCTGTGGAACTTTCTGAGAATGGAGTCATCTTCTCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR CCA 90 bp	ATACAGGTGGGAGATGGAGAACCCCAGCCAGACATTAGATCAGAGAACCTGCCGCATAGAAATCATCTGTaGAGGGCAGGAAGGTCAGAA	+
Preference number: 4 (lower is better) Translates to: IQVGDGEPQPDIRSENLPHRNHL*RAGRSE Trigger: TTCTGACCTTCCTGCCCTCCACAGATGATTTCTATG...CGGCAGGTTCTCTGATCTAATGTCTGGCTGGGGTTCTCCATCTCCCACCTGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR TCA 90 bp	ATACAGGTGGGAGATGGAGAACCCCAGCCAGACATTAGATCAGAGAACCTGCCGTCTCCAGATGGTCTCTaGCTTTTCAATGTCTACATG	+
Preference number: 4 (lower is better) Translates to: IQVGDGEPQPDIRSENLPSPDGL*LFNVYM Trigger: CATGTAGACATTGAAAAGTCAGAGACCATCTGGAGA...CGGCAGGTTCTCTGATCTAATGTCTGGCTGGGGTTCTCCATCTCCCACCTGTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR CCA 90 bp	AGGTGGGAGATGGAGAACCCCAGCCAGACATTAGATCAGAGAACCTGCCGCCATTTTTCAATGTCTACATaGAAAATCTCATCGCCGTCA	+
Preference number: 4 (lower is better) Translates to: RWEMENPSQTLDQRTCRHFSMST*KISSPS Trigger: TGACGGCGATGAGATTTTCCATGTAGACATTGAAAA...ATGGCGGCAGGTTCTCTGATCTAATGTCTGGCTGGGGTTCTCCATCTCCCACCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR GCA 90 bp	ATACAGGTGGGAGATGGAGAACCCCAGCCAGACATTAGATCAGAGAACCTGCCGAAAGCTGGCAAACTTTaGAAATTCTTCAAGTCTCCA	+
Preference number: 4 (lower is better) Translates to: IQVGDGEPQPDIRSENLPKAGKL*KFFKSP Trigger: TGGAGACTTGAAGAATTTGCAAAGTTTGCCAGCTTT...CGGCAGGTTCTCTGATCTAATGTCTGGCTGGGGTTCTCCATCTCCCACCTGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR GCA 90 bp	ATAGAATATAGATACAGGTGGGAGATGGAGAACCCCAGCCAGACATTAGATCAGTCAGAAAGTGGAATTTaGGGAAGAGGTGATCGTCCC	+
Preference number: 4 (lower is better) Translates to: IEYRYRWEMENPSQTLDQSESGI*GRGDRP Trigger: GGGACGATCACCTCTTCCGCAAATTCCACTTTCTGA...CTGATCTAATGTCTGGCTGGGGTTCTCCATCTCCCACCTGTATCTATATTCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR CCA 90 bp	GCGGAGGAAGAACTTTGTGATATTTGTCACAGAGGAATTATTATAAATGGTGGAGGTTCACAGGGCTTCTaGAGAGTACAGTCACCTCTG	+
Preference number: 4 (lower is better) Translates to: AEEELCDICHRGIIINGGGSQGF*RVQSPL Trigger: CAGAGGTGACTGTACTCTCCAGAAGCCCTGTGAACC...TCCACCATTTATAATAATTCCTCTGTGACAAATATCACAAAGTTCTTCCTCCGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR CCA 90 bp	ATAGAATATAGATACAGGTGGGAGATGGAGAACCCCAGCCAGACATTAGATCAGATTCTCTTTAGTTTCTaGGAGGAGGGTTTTCTCTTC	+
Preference number: 4 (lower is better) Translates to: IEYRYRWEMENPSQTLDQILFSF*EEGFLF Trigger: GAAGAGAAAACCCTCCTCCCAGAAACTAAAGAGAAT...CTGATCTAATGTCTGGCTGGGGTTCTCCATCTCCCACCTGTATCTATATTCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR CCA 90 bp	GCGGAGGAAGAACTTTGTGATATTTGTCACAGAGGAATTATTATAAATGGTGGACCTGAGCCTCAAAGCTaGCAAACTTTGCAAATTCTT	+
Preference number: 4 (lower is better) Translates to: AEEELCDICHRGIIINGGPEPQS*QTLQIL Trigger: AAGAATTTGCAAAGTTTGCCAGCTTTGAGGCTCAGG...TCCACCATTTATAATAATTCCTCTGTGACAAATATCACAAAGTTCTTCCTCCGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR CAA 90 bp	ATACAGGTGGGAGATGGAGAACCCCAGCCAGACATTAGATCAGAGAACCTGCCGCGGAGCCAGGTGACATaGACGACTGGAGGGGAGAAC	+
Preference number: 5 (lower is better) Translates to: IQVGDGEPQPDIRSENLPRSQVT*TTGGEN Trigger: GTTCTCCCCTCCAGTCGTCAATGTCACCTGGCTCCG...CGGCAGGTTCTCTGATCTAATGTCTGGCTGGGGTTCTCCATCTCCCACCTGTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR CAA 90 bp	AAATGGTGGAAGATAGAATATAGATACAGGTGGGAGATGGAGAACCCCAGCCAGACCTCTGGGGCCACGTaGGCATCTGGAGTGTTGTTG	+
Preference number: 5 (lower is better) Translates to: KWWKIEYRYRWEMENPSQTSGAT*ASGVLL Trigger: CAACAACACTCCAGATGCCAACGTGGCCCCAGAGGT...CTGGCTGGGGTTCTCCATCTCCCACCTGTATCTATATTCTATCTTCCACCATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS CCA 90 bp	ACCCACAAACAACCCAAGAGCACACACGACATTCTCTTTAGTTTCTaGGAGGAGGGTTTTCTCTTCAAACTCCCAGTGCTTCCGCAGAGG	+
Preference number: 5 (lower is better) Translates to: THKQPKSTHDILFSF*EEGFLFKLPVLPQR Trigger: CCTCTGCGGAAGCACTGGGAGTTTGAAGAGAAAACCCTCCTCCCAGAAACTAAAGAGAATGTCGTGTGTGCTCTTGGGTTGTTTGTGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000134042.3 ENSMUST00000235482.2
CDS TCA 90 bp	ACATCCAGGTTAGCTTTGTCCACAGCTATATTAGCCAGTGCACCCTaGGCCTCAAAGCTGGCAAACTTTGCAAATTCTTCAAGTCTCCAG	+
Preference number: 5 (lower is better) Translates to: TSRLALSTAILASAP*ASKLANFANSSSLQ Trigger: CTGGAGACTTGAAGAATTTGCAAAGTTTGCCAGCTTTGAGGCTCAGGGTGCACTGGCTAATATAGCTGTGGACAAAGCTAACCTGGATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000134042.3 ENSMUST00000235482.2
CDS-3UTR CAA 90 bp	AAATGGTGGAAGATAGAATATAGATACAGGTGGGAGATGGAGAACCCCAGCCAGGCATCTGGAGTGTTGTaGGAACGCTCTTTCATGACA	+
Preference number: 5 (lower is better) Translates to: KWWKIEYRYRWEMENPSQASGVL*ERSFMT Trigger: TGTCATGAAAGAGCGTTCCAACAACACTCCAGATGC...CTGGCTGGGGTTCTCCATCTCCCACCTGTATCTATATTCTATCTTCCACCATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS-3UTR CAA 90 bp	ATAGAATATAGATACAGGTGGGAGATGGAGAACCCCAGCCAGACATTAGATCAGACATCCAGGTTAGCTTaGTCCACAGCTATATTAGCC	+
Preference number: 5 (lower is better) Translates to: IEYRYRWEMENPSQTLDQTSRLA*STAILA Trigger: GGCTAATATAGCTGTGGACAAAGCTAACCTGGATGT...CTGATCTAATGTCTGGCTGGGGTTCTCCATCTCCCACCTGTATCTATATTCTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS TCA 90 bp	AAAGCTGGCAAACTTTGCAAATTCTTCAAGTCTCCAGATGGTCTCTaGCTTTTCAATGTCTACATGGAAAATCTCATCGCCGTCAAAGTC	+
Preference number: 5 (lower is better) Translates to: KAGKLCKFFKSPDGL*LFNVYMENLIAVKV Trigger: GACTTTGACGGCGATGAGATTTTCCATGTAGACATTGAAAAGTCAGAGACCATCTGGAGACTTGAAGAATTTGCAAAGTTTGCCAGCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000134042.3 ENSMUST00000235482.2
CDS-3UTR CAA 90 bp	GCGGAGGAAGAACTTTGTGATATTTGTCACAGAGGAATTATTATAAATGGTGGAACTGGAGGGGAGAACTaGTCAATGAAACAGATGAGG	+
Preference number: 5 (lower is better) Translates to: AEEELCDICHRGIIINGGTGGEN*SMKQMR Trigger: CCTCATCTGTTTCATTGACAAGTTCTCCCCTCCAGT...TCCACCATTTATAATAATTCCTCTGTGACAAATATCACAAAGTTCTTCCTCCGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235482.2
CDS CCA 72 bp	CAACCCAAGAGCACACACGACATTCTCTTTAGTTTCTaGGAGGAGGGTTTTCTCTTCAAACTCCCAGTGCTT	+
Preference number: 6 (lower is better) Translates to: QPKSTHDILFSF*EEGFLFKLPVL Trigger: AAGCACTGGGAGTTTGAAGAGAAAACCCTCCTCCCAGAAACTAAAGAGAATGTCGTGTGTGCTCTTGGGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000134042.3 ENSMUST00000235482.2
CDS TCA 72 bp	TTAGCTTTGTCCACAGCTATATTAGCCAGTGCACCCTaGGCCTCAAAGCTGGCAAACTTTGCAAATTCTTCA	+
Preference number: 6 (lower is better) Translates to: LALSTAILASAP*ASKLANFANSS Trigger: TGAAGAATTTGCAAAGTTTGCCAGCTTTGAGGCTCAGGGTGCACTGGCTAATATAGCTGTGGACAAAGCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000134042.3 ENSMUST00000235482.2
CDS TCA 72 bp	AAACTTTGCAAATTCTTCAAGTCTCCAGATGGTCTCTaGCTTTTCAATGTCTACATGGAAAATCTCATCGCC	+
Preference number: 6 (lower is better) Translates to: KLCKFFKSPDGL*LFNVYMENLIA Trigger: GGCGATGAGATTTTCCATGTAGACATTGAAAAGTCAGAGACCATCTGGAGACTTGAAGAATTTGCAAAGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000134042.3 ENSMUST00000235482.2