Pregenerated sensors for H2-DMB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037548Ensembl transcript IDs: ENSMUST00000041982.9, ENSMUST00000171231.8, ENSMUST00000236519.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGGAAGCCAGGAATTCCACCAGTTTATTTCTTAGTGACCACCTATaGCACGGTGCCCTTGTGACAAGGAGGGGCTCTCAGAAGACCTTG | + |
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Preference number: 1 (lower is better) Translates to: GEARNSTSLFLSDHL*HGALVTRRGSQKTL Trigger: CAAGGTCTTCTGAGAGCCCCTCCTTGTCACAAGGGCACCGTGTCATAGGTGGTCACTAAGAAATAAACTGGTGGAATTCCTGGCTTCCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041982.9 ENSMUST00000236519.2 |
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| 3UTR-3UTR CCA 90 bp | ATTATGAATACCTCCCAAGCTGTTACACATCGGAAGCCGGGCATGGTGGCGTACTTAATCCCAGCACTCTaGAGGCAGAGGCAGGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: IMNTSQAVTHRKPGMVAYLIPAL*RQRQVD Trigger: ATCCACCTGCCTCTGCCTCCAGAGTGCTGGGATTAA...GTACGCCACCATGCCCGGCTTCCGATGTGTAACAGCTTGGGAGGTATTCATAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| 3UTR-3UTR TCA 90 bp | ATTATGAATACCTCCCAAGCTGTTACACATCGGAAGCCGGGCATGGTGGCGTACGAATCCTCAGGAGTCTaGATCTCCTTGGTTCTGGGT | + |
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Preference number: 2 (lower is better) Translates to: IMNTSQAVTHRKPGMVAYESSGV*ISLVLG Trigger: ACCCAGAACCAAGGAGATTCAGACTCCTGAGGATTC...GTACGCCACCATGCCCGGCTTCCGATGTGTAACAGCTTGGGAGGTATTCATAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| 3UTR-3UTR CCA 90 bp | ACCTTGAACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGAGACAGACTATCGGAAGCCGGGCATaGTGGCGTACGCCTTTAATC | + |
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Preference number: 2 (lower is better) Translates to: TLNPLLRSAHFRKHLRQTIGSRA*WRTPLI Trigger: GATTAAAGGCGTACGCCACCATGCCCGGCTTCCGAT...AGTCTGTCTCAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTTCAAGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| 3UTR-3UTR CCA 90 bp | TCTCAGAAGACCTTGAACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGTTAATCCCAGCACTCTaGAGGCAGAGGCAGGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: SQKTLNPLLRSAHFRKHLLIPAL*RQRQVD Trigger: ATCCACCTGCCTCTGCCTCCAGAGTGCTGGGATTAA...CAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTTCAAGGTCTTCTGAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCAGAAGACCTTGAACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGGAATCCTCAGGAGTCTaGATCTCCTTGGTTCTGGGT | + |
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Preference number: 2 (lower is better) Translates to: SQKTLNPLLRSAHFRKHLESSGV*ISLVLG Trigger: ACCCAGAACCAAGGAGATTCAGACTCCTGAGGATTC...CAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTTCAAGGTCTTCTGAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| 3UTR-3UTR CCA 90 bp | AACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGAGACAGACTTCATTATTAATCCCAGCACTCTaGAGGCAGAGGCAGGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: NPLLRSAHFRKHLRQTSLLIPAL*RQRQVD Trigger: ATCCACCTGCCTCTGCCTCCAGAGTGCTGGGATTAA...TAATGAAGTCTGTCTCAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| 3UTR-3UTR TCA 90 bp | AACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGAGACAGACTTCATTAGAATCCTCAGGAGTCTaGATCTCCTTGGTTCTGGGT | + |
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Preference number: 2 (lower is better) Translates to: NPLLRSAHFRKHLRQTSLESSGV*ISLVLG Trigger: ACCCAGAACCAAGGAGATTCAGACTCCTGAGGATTC...TAATGAAGTCTGTCTCAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| 3UTR TCA 72 bp | AGGAATTCCACCAGTTTATTTCTTAGTGACCACCTATaGCACGGTGCCCTTGTGACAAGGAGGGGCTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: RNSTSLFLSDHL*HGALVTRRGSQ Trigger: CTGAGAGCCCCTCCTTGTCACAAGGGCACCGTGTCATAGGTGGTCACTAAGAAATAAACTGGTGGAATTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| 3UTR TCA 72 bp | ACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTaGGACAGACTTCATTATGAATACCTCCCAAGCTGT | + |
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Preference number: 3 (lower is better) Translates to: TPSLDQLTSENT*DRLHYEYLPSC Trigger: ACAGCTTGGGAGGTATTCATAATGAAGTCTGTCTCAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| CDS-3UTR CCA 90 bp | ATTATGAATACCTCCCAAGCTGTTACACATCGGAAGCCGGGCATGGTGGCGTACTCCAGTCCCCGCGGATaGGCTCAGAGGTCCCGCTGT | + |
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Preference number: 4 (lower is better) Translates to: IMNTSQAVTHRKPGMVAYSSPRG*AQRSRC Trigger: ACAGCGGGACCTCTGAGCCCATCCGCGGGGACTGGA...GTACGCCACCATGCCCGGCTTCCGATGTGTAACAGCTTGGGAGGTATTCATAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| CDS-3UTR TCA 90 bp | GGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGTGGGTGGCACAGTCCTaGAGCCCGTTTTGCAAGCGA | + |
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Preference number: 4 (lower is better) Translates to: GGRGRWISEFEASLVYKVWVAQS*SPFCKR Trigger: TCGCTTGCAAAACGGGCTTCAGGACTGTGCCACCCA...CACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS-3UTR CCA 90 bp | TCTCAGAAGACCTTGAACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGTCCAGTCCCCGCGGATaGGCTCAGAGGTCCCGCTGT | + |
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Preference number: 4 (lower is better) Translates to: SQKTLNPLLRSAHFRKHLSSPRG*AQRSRC Trigger: ACAGCGGGACCTCTGAGCCCATCCGCGGGGACTGGA...CAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTTCAAGGTCTTCTGAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| CDS-3UTR TCA 90 bp | ACCTTGAACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGAGACAGACTCCATACAGTGCAGACTaGGGACCAGCAGCAGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: TLNPLLRSAHFRKHLRQTPYSAD*GPAAAA Trigger: GGCTGCTGCTGCTGGTCCTCAGTCTGCACTGTATGG...AGTCTGTCTCAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTTCAAGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS-3UTR GCA 90 bp | TCTCAGAAGACCTTGAACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGCCTGCCCCCATACAGTaGAGACTGAGGACCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SQKTLNPLLRSAHFRKHLPAPIQ*RLRTSS Trigger: GCTGCTGGTCCTCAGTCTGCACTGTATGGGGGCAGG...CAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTTCAAGGTCTTCTGAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS-3UTR CCA 90 bp | ATTATGAATACCTCCCAAGCTGTTACACATCGGAAGCCGGGCATGGTGGCGTACACATCCCAGAAAGGTTaGGTGTGGGTGGCACAGTCC | + |
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Preference number: 4 (lower is better) Translates to: IMNTSQAVTHRKPGMVAYTSQKG*VWVAQS Trigger: GGACTGTGCCACCCACACCCAACCTTTCTGGGATGT...GTACGCCACCATGCCCGGCTTCCGATGTGTAACAGCTTGGGAGGTATTCATAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS-3UTR CCA 90 bp | CATTATGAATACCTCCCAAGCTGTTACACATCGGAAGCCGGGCATGGTGGCGTAGGCGCTCTCGTTCTGTaGGTCAGCACATCCCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: HYEYLPSCYTSEAGHGGVGALVL*VSTSQK Trigger: TTTCTGGGATGTGCTGACCCACAGAACGAGAGCGCC...TACGCCACCATGCCCGGCTTCCGATGTGTAACAGCTTGGGAGGTATTCATAATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS-3UTR CCA 90 bp | ATTATGAATACCTCCCAAGCTGTTACACATCGGAAGCCGGGCATGGTGGCGTACGGAGAGGAGTGTAGCTaGAGGAATGAGACTTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: IMNTSQAVTHRKPGMVAYGEECS*RNETCA Trigger: GGCGCAAGTCTCATTCCTCCAGCTACACTCCTCTCC...GTACGCCACCATGCCCGGCTTCCGATGTGTAACAGCTTGGGAGGTATTCATAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| CDS-3UTR CCA 90 bp | CATTATGAATACCTCCCAAGCTGTTACACATCGGAAGCCGGGCATGGTGGCGTAGGAGAGGAGTGTAGCTaGAGGAATGAGACTTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: HYEYLPSCYTSEAGHGGVGEECS*RNETCA Trigger: GGCGCAAGTCTCATTCCTCCAGCTACACTCCTCTCC...TACGCCACCATGCCCGGCTTCCGATGTGTAACAGCTTGGGAGGTATTCATAATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| 3UTR CAA 72 bp | GGTGCCCTTGTGACAAGGAGGGGCTCTCAGAAGACCTaGAACCCCCTCCTTAGATCAGCTCACTTCAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: GALVTRRGSQKT*NPLLRSAHFRK Trigger: TTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTTCAAGGTCTTCTGAGAGCCCCTCCTTGTCACAAGGGCACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| CDS-3UTR GCA 90 bp | AACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGAGACAGACTTCATTAAGCCACAAAGCCACCTaGCCCCATACAGTGCAGACT | + |
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Preference number: 4 (lower is better) Translates to: NPLLRSAHFRKHLRQTSLSHKAT*PHTVQT Trigger: AGTCTGCACTGTATGGGGGCAGGTGGCTTTGTGGCT...TAATGAAGTCTGTCTCAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS-3UTR CCA 90 bp | AACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGAGACAGACTTCATTAGGAGAGGAGTGTAGCTaGAGGAATGAGACTTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: NPLLRSAHFRKHLRQTSLGEECS*RNETCA Trigger: GGCGCAAGTCTCATTCCTCCAGCTACACTCCTCTCC...TAATGAAGTCTGTCTCAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| CDS-3UTR CCA 90 bp | AACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGAGACAGACTTCATTAGTATGTGAAGTCCTGTaGGGTCCCAGCATCATTCAG | + |
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Preference number: 4 (lower is better) Translates to: NPLLRSAHFRKHLRQTSLVCEVL*GPSIIQ Trigger: CTGAATGATGCTGGGACCCCACAGGACTTCACATAC...TAATGAAGTCTGTCTCAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS-3UTR TCA 90 bp | AACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGAGACAGACTTCATTAGGCTCTCCTGTTCGTTaGGGATATTTGAAATTATTT | + |
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Preference number: 4 (lower is better) Translates to: NPLLRSAHFRKHLRQTSLGSPVR*GYLKLF Trigger: AAATAATTTCAAATATCCTCAACGAACAGGAGAGCC...TAATGAAGTCTGTCTCAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CCA 90 bp | TCACTGTCTGGATGGGGGACAGCCCAGGTGTCCAGTCCCCGCGGATaGGCTCAGAGGTCCCGCTGTGCTGAACCACGCAGGTGTAGACGT | + |
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Preference number: 5 (lower is better) Translates to: SLSGWGTAQVSSPRG*AQRSRCAEPRRCRR Trigger: ACGTCTACACCTGCGTGGTTCAGCACAGCGGGACCTCTGAGCCCATCCGCGGGGACTGGACACCTGGGCTGTCCCCCATCCAGACAGTGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000041982.9 ENSMUST00000171231.8 ENSMUST00000236519.2 |
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| CDS TCA 90 bp | TCCTGTGGGGTCCCAGCATCATTCAGCACGCACGTGCTTTCCACATaGGCCACAAAGCCACCTGCCCCCATACAGTGCAGACTGAGGACC | + |
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Preference number: 5 (lower is better) Translates to: SCGVPASFSTHVLST*ATKPPAPIQCRLRT Trigger: GGTCCTCAGTCTGCACTGTATGGGGGCAGGTGGCTTTGTGGCTCATGTGGAAAGCACGTGCGTGCTGAATGATGCTGGGACCCCACAGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS GCA 90 bp | ATCATTCAGCACGCACGTGCTTTCCACATGAGCCACAAAGCCACCTaGCCCCATACAGTGCAGACTGAGGACCAGCAGCAGCAGCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: IIQHARAFHMSHKAT*PHTVQTEDQQQQPE Trigger: CTCTGGCTGCTGCTGCTGGTCCTCAGTCTGCACTGTATGGGGGCAGGTGGCTTTGTGGCTCATGTGGAAAGCACGTGCGTGCTGAATGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CCA 90 bp | AAAGGTGTGGTTTGGGCTACTCGGACAGATGGCGCTCTCGTTCTGTaGGTCAGCACATCCCAGAAAGGTTGGGTGTGGGTGGCACAGTCC | + |
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Preference number: 5 (lower is better) Translates to: KGVVWATRTDGALVL*VSTSQKGWVWVAQS Trigger: GGACTGTGCCACCCACACCCAACCTTTCTGGGATGTGCTGACCCACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CCA 90 bp | AGGGACAAGCTGCCCATTCTTCATCCATGTGATGGTCACATCCGCTaGATAGAAGCCCCAGACGTAGCAGGCCAGCATCACGGGCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: RDKLPILHPCDGHIR*IEAPDVAGQHHGLP Trigger: AGGGAGCCCGTGATGCTGGCCTGCTACGTCTGGGGCTTCTATCCAGCGGATGTGACCATCACATGGATGAAGAATGGGCAGCTTGTCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CCA 90 bp | GGGCTCCCTTGTGTTAAAAGGTGTGGTTTGGGCTACTCGGACAGATaGCGCTCTCGTTCTGTGGGTCAGCACATCCCAGAAAGGTTGGGT | + |
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Preference number: 5 (lower is better) Translates to: GLPCVKRCGLGYSDR*RSRSVGQHIPERLG Trigger: ACCCAACCTTTCTGGGATGTGCTGACCCACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTTTAACACAAGGGAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS-3UTR CAA 90 bp | ATTATGAATACCTCCCAAGCTGTTACACATCGGAAGCCGGGCATGGTGGCGTACCACATCCCAGAAAGGTaGGGTGTGGGTGGCACAGTC | + |
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Preference number: 5 (lower is better) Translates to: IMNTSQAVTHRKPGMVAYHIPER*GVGGTV Trigger: GACTGTGCCACCCACACCCAACCTTTCTGGGATGTG...GTACGCCACCATGCCCGGCTTCCGATGTGTAACAGCTTGGGAGGTATTCATAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS-3UTR CAA 90 bp | ACCTTGAACCCCCTCCTTAGATCAGCTCACTTCAGAAAACACCTGAGACAGACTGTCCTGAAGCCCGTTTaGCAAGCGATGAATAAGGCT | + |
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Preference number: 5 (lower is better) Translates to: TLNPLLRSAHFRKHLRQTVLKPV*QAMNKA Trigger: AGCCTTATTCATCGCTTGCAAAACGGGCTTCAGGAC...AGTCTGTCTCAGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTTCAAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS TCA 90 bp | GTTTTGCAAGCGATGAATAAGGCTCTCCTGTTCGTTGAGGATATTTaGAATTATTTCAGCCAATCTAGACAGCACCCCAAATTCACAGGG | + |
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Preference number: 5 (lower is better) Translates to: VLQAMNKALLFVEDI*NYFSQSRQHPKFTG Trigger: CCCTGTGAATTTGGGGTGCTGTCTAGATTGGCTGAAATAATTTCAAATATCCTCAACGAACAGGAGAGCCTTATTCATCGCTTGCAAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS GCA 72 bp | CACGCACGTGCTTTCCACATGAGCCACAAAGCCACCTaGCCCCATACAGTGCAGACTGAGGACCAGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: HARAFHMSHKAT*PHTVQTEDQQQ Trigger: CTGCTGCTGGTCCTCAGTCTGCACTGTATGGGGGCAGGTGGCTTTGTGGCTCATGTGGAAAGCACGTGCGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CAA 90 bp | GACAGATGGCGCTCTCGTTCTGTGGGTCAGCACATCCCAGAAAGGTaGGGTGTGGGTGGCACAGTCCTGAAGCCCGTTTTGCAAGCGATG | + |
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Preference number: 6 (lower is better) Translates to: DRWRSRSVGQHIPER*GVGGTVLKPVLQAM Trigger: CATCGCTTGCAAAACGGGCTTCAGGACTGTGCCACCCACACCCAACCTTTCTGGGATGTGCTGACCCACAGAACGAGAGCGCCATCTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CAA 90 bp | GTAGCAGGCCAGCATCACGGGCTCCCTTGTGTTAAAAGGTGTGGTTaGGGCTACTCGGACAGATGGCGCTCTCGTTCTGTGGGTCAGCAC | + |
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Preference number: 6 (lower is better) Translates to: VAGQHHGLPCVKRCG*GYSDRWRSRSVGQH Trigger: GTGCTGACCCACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTTTAACACAAGGGAGCCCGTGATGCTGGCCTGCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CCA 72 bp | GTTTGGGCTACTCGGACAGATGGCGCTCTCGTTCTGTaGGTCAGCACATCCCAGAAAGGTTGGGTGTGGGTG | + |
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Preference number: 6 (lower is better) Translates to: VWATRTDGALVL*VSTSQKGWVWV Trigger: CACCCACACCCAACCTTTCTGGGATGTGCTGACCCACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CAA 72 bp | CGCTCTCGTTCTGTGGGTCAGCACATCCCAGAAAGGTaGGGTGTGGGTGGCACAGTCCTGAAGCCCGTTTTG | + |
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Preference number: 6 (lower is better) Translates to: RSRSVGQHIPER*GVGGTVLKPVL Trigger: CAAAACGGGCTTCAGGACTGTGCCACCCACACCCAACCTTTCTGGGATGTGCTGACCCACAGAACGAGAGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CCA 72 bp | TGTGGGTCAGCACATCCCAGAAAGGTTGGGTGTGGGTaGCACAGTCCTGAAGCCCGTTTTGCAAGCGATGAA | + |
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Preference number: 6 (lower is better) Translates to: CGSAHPRKVGCG*HSPEARFASDE Trigger: TTCATCGCTTGCAAAACGGGCTTCAGGACTGTGCCACCCACACCCAACCTTTCTGGGATGTGCTGACCCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CCA 72 bp | AGCATCACGGGCTCCCTTGTGTTAAAAGGTGTGGTTTaGGCTACTCGGACAGATGGCGCTCTCGTTCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SITGSLVLKGVV*ATRTDGALVLW Trigger: CCACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTTTAACACAAGGGAGCCCGTGATGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CAA 72 bp | CAGCATCACGGGCTCCCTTGTGTTAAAAGGTGTGGTTaGGGCTACTCGGACAGATGGCGCTCTCGTTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: QHHGLPCVKRCG*GYSDRWRSRSV Trigger: CACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTTTAACACAAGGGAGCCCGTGATGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CAA 72 bp | AGGTTGGGTGTGGGTGGCACAGTCCTGAAGCCCGTTTaGCAAGCGATGAATAAGGCTCTCCTGTTCGTTGAG | + |
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Preference number: 6 (lower is better) Translates to: RLGVGGTVLKPV*QAMNKALLFVE Trigger: CTCAACGAACAGGAGAGCCTTATTCATCGCTTGCAAAACGGGCTTCAGGACTGTGCCACCCACACCCAACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS CCA 72 bp | TGTGTTAAAAGGTGTGGTTTGGGCTACTCGGACAGATaGCGCTCTCGTTCTGTGGGTCAGCACATCCCAGAA | + |
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Preference number: 6 (lower is better) Translates to: CVKRCGLGYSDR*RSRSVGQHIPE Trigger: TTCTGGGATGTGCTGACCCACAGAACGAGAGCGCCATCTGTCCGAGTAGCCCAAACCACACCTTTTAACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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| CDS TCA 72 bp | GCGATGAATAAGGCTCTCCTGTTCGTTGAGGATATTTaGAATTATTTCAGCCAATCTAGACAGCACCCCAAA | + |
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Preference number: 6 (lower is better) Translates to: AMNKALLFVEDI*NYFSQSRQHPK Trigger: TTTGGGGTGCTGTCTAGATTGGCTGAAATAATTTCAAATATCCTCAACGAACAGGAGAGCCTTATTCATCGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041982.9 |
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