Pregenerated sensors for H2-D1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073411Ensembl transcript IDs: ENSMUST00000172503.3, ENSMUST00000172785.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTGGCTGGAGCAGCAAGGTTGGCTATGGAAGGGAACACAGGGCAGTaGAGGGATAGGGTCCTGGTGTGCAGGGCAGGCTGGGCTCCACAG | + |
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Preference number: 1 (lower is better) Translates to: LAGAARLAMEGNTGQ*RDRVLVCRAGWAPQ Trigger: CTGTGGAGCCCAGCCTGCCCTGCACACCAGGACCCTATCCCTGCACTGCCCTGTGTTCCCTTCCATAGCCAACCTTGCTGCTCCAGCCAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR GCA 90 bp | GCTATGGAAGGGAACACAGGGCAGTGCAGGGATAGGGTCCTGGTGTaGAGGGCAGGCTGGGCTCCACAGTTCTTCACACTGAACCCAAGC | + |
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Preference number: 1 (lower is better) Translates to: AMEGNTGQCRDRVLV*RAGWAPQFFTLNPS Trigger: GCTTGGGTTCAGTGTGAAGAACTGTGGAGCCCAGCCTGCCCTGCACACCAGGACCCTATCCCTGCACTGCCCTGTGTTCCCTTCCATAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR CCA 90 bp | GGTAGCATGGAGCTTACAGGATGCAGATGTCCCCCAGTGTTTGGCTaGAGCAGCAAGGTTGGCTATGGAAGGGAACACAGGGCAGTGCAG | + |
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Preference number: 1 (lower is better) Translates to: GSMELTGCRCPPVFG*SSKVGYGREHRAVQ Trigger: CTGCACTGCCCTGTGTTCCCTTCCATAGCCAACCTTGCTGCTCCAGCCAAACACTGGGGGACATCTGCATCCTGTAAGCTCCATGCTACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR TCA 90 bp | GGGTCCTGGTGTGCAGGGCAGGCTGGGCTCCACAGTTCTTCACACTaGACCCAAGCTCACAGGGAACATCAGACAATGTTGTGTAAAGAG | + |
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Preference number: 1 (lower is better) Translates to: GSWCAGQAGLHSSSH*TQAHREHQTMLCKE Trigger: CTCTTTACACAACATTGTCTGATGTTCCCTGTGAGCTTGGGTTCAGTGTGAAGAACTGTGGAGCCCAGCCTGCCCTGCACACCAGGACCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR TCA 90 bp | ACCCAAGCTCACAGGGAACATCAGACAATGTTGTGTAAAGAGAACTaGGGGCTCTGGATGTCACAGGAGAGACCTGAACACATCGTCTGT | + |
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Preference number: 1 (lower is better) Translates to: TQAHREHQTMLCKEN*GLWMSQERPEHIVC Trigger: ACAGACGATGTGTTCAGGTCTCTCCTGTGACATCCAGAGCCCTCAGTTCTCTTTACACAACATTGTCTGATGTTCCCTGTGAGCTTGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR TCA 90 bp | TCTCTCCAGCCACCCACATTCAAATTATTATTCTCAGTGTGGAAGTaGGGAGCTGCAGCTCAGGGTAGCATGGAGCTTACAGGATGCAGA | + |
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Preference number: 1 (lower is better) Translates to: SLQPPTFKLLFSVWK*GAAAQGSMELTGCR Trigger: TCTGCATCCTGTAAGCTCCATGCTACCCTGAGCTGCAGCTCCTCACTTCCACACTGAGAATAATAATTTGAATGTGGGTGGCTGGAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR TCA 90 bp | GCAGCTGTCTTCACGCTAGAGAATGAGAGTCATGAACCATCACTGTaGAGACAACATTCCAGCAACCCACCACTCACTCTCAGGAGATTC | + |
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Preference number: 1 (lower is better) Translates to: AAVFTLENESHEPSL*RQHSSNPPLTLRRF Trigger: GAATCTCCTGAGAGTGAGTGGTGGGTTGCTGGAATGTTGTCTTCACAGTGATGGTTCATGACTCTCATTCTCTAGCGTGAAGACAGCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172503.3 |
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| 3UTR-3UTR CCA 90 bp | GATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGCGCTGAGCCATCTCTCCAGCGCAGGGATAGGGTCCTaGTGTGCAGGGCAGGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: DLNSGPLEEQSALSHLSSAGIGS*CAGQAG Trigger: CCCAGCCTGCCCTGCACACCAGGACCCTATCCCTGC...GCTGGAGAGATGGCTCAGCGCTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR-3UTR CCA 90 bp | TGGAAGGGAACACAGGGCAGTGCAGGGATAGGGTCCTGGTGTGCAGGGCAGGCTCAGCAAGGTTGGCTATaGAAGGGAACACAGGGCAGT | + |
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Preference number: 2 (lower is better) Translates to: WKGTQGSAGIGSWCAGQAQQGWL*KGTQGS Trigger: ACTGCCCTGTGTTCCCTTCCATAGCCAACCTTGCTG...AGCCTGCCCTGCACACCAGGACCCTATCCCTGCACTGCCCTGTGTTCCCTTCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR CAA 90 bp | GGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTaGGAAGAGCAGTCAGCGCTGAGCCATCTCTCCAGCCACCCACAT | + |
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Preference number: 2 (lower is better) Translates to: GCEPPCGCWDLNSGP*EEQSALSHLSSHPH Trigger: ATGTGGGTGGCTGGAGAGATGGCTCAGCGCTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR-3UTR GCA 90 bp | GAGCAGTCAGCGCTGAGCCATCTCTCCAGCCACCCACATTCAAATTATTATTCTGGGAACACAGGGCAGTaGAGGGATAGGGTCCTGGTG | + |
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Preference number: 2 (lower is better) Translates to: EQSALSHLSSHPHSNYYSGNTGQ*RDRVLV Trigger: CACCAGGACCCTATCCCTGCACTGCCCTGTGTTCCC...AGAATAATAATTTGAATGTGGGTGGCTGGAGAGATGGCTCAGCGCTGACTGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR CAA 90 bp | GATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCAGGACCTTTGGAAGAGCAGTCAGCGCTGAGCCATCTC | + |
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Preference number: 2 (lower is better) Translates to: DPITDGCEPPCGCWD*NSGPLEEQSALSHL Trigger: GAGATGGCTCAGCGCTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR-3UTR TCA 90 bp | ATGTCACAGGAGAGACCTGAACACATCGTCTGTCACTCAGTACAGTCCAGGCAGGTCACAGGAGAGACCTaGACACATCGTCTGTCACTC | + |
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Preference number: 2 (lower is better) Translates to: MSQERPEHIVCHSVQSRQVTGET*THRLSL Trigger: GAGTGACAGACGATGTGTTCAGGTCTCTCCTGTGAC...CTGCCTGGACTGTACTGAGTGACAGACGATGTGTTCAGGTCTCTCCTGTGACAT 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR-3UTR CCA 90 bp | TGTAGCTGTCTTCAGACACTGCAGAAGAGGGTGTTAGATCCCATTACAGATGGTGTGTGCAGGGCAGGCTaGGCTCCACAGTTCTTCACA | + |
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Preference number: 2 (lower is better) Translates to: CSCLQTLQKRVLDPITDGVCRAG*APQFFT Trigger: TGTGAAGAACTGTGGAGCCCAGCCTGCCCTGCACAC...ACCATCTGTAATGGGATCTAACACCCTCTTCTGCAGTGTCTGAAGACAGCTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR-3UTR TCA 90 bp | TGTCTTCAGACACTGCAGAAGAGGGTGTTAGATCCCATTACAGATGGTTGTGAGGTCACAGGAGAGACCTaGACACATCGTCTGTCACTC | + |
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Preference number: 2 (lower is better) Translates to: CLQTLQKRVLDPITDGCEVTGET*THRLSL Trigger: GAGTGACAGACGATGTGTTCAGGTCTCTCCTGTGAC...CTCACAACCATCTGTAATGGGATCTAACACCCTCTTCTGCAGTGTCTGAAGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR-3UTR TCA 90 bp | TTAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTGTGTAAAGAGAACTaGGGGCTCTGGATGTCACAG | + |
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Preference number: 2 (lower is better) Translates to: LDPITDGCEPPCGCWDLNLCKEN*GLWMSQ Trigger: CTGTGACATCCAGAGCCCTCAGTTCTCTTTACACAA...GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR-3UTR TCA 90 bp | GCTGAGCCATCTCTCCAGCCACCCACATTCAAATTATTATTCTCAGTGTGGAAGCATGAACCATCACTGTaGAGACAACATTCCAGCAAC | + |
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Preference number: 2 (lower is better) Translates to: AEPSLQPPTFKLLFSVWKHEPSL*RQHSSN Trigger: GTTGCTGGAATGTTGTCTTCACAGTGATGGTTCATG...CTTCCACACTGAGAATAATAATTTGAATGTGGGTGGCTGGAGAGATGGCTCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172503.3 |
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| 3UTR GCA 72 bp | GGGAACACAGGGCAGTGCAGGGATAGGGTCCTGGTGTaGAGGGCAGGCTGGGCTCCACAGTTCTTCACACTG | + |
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Preference number: 3 (lower is better) Translates to: GNTGQCRDRVLV*RAGWAPQFFTL Trigger: CAGTGTGAAGAACTGTGGAGCCCAGCCTGCCCTGCACACCAGGACCCTATCCCTGCACTGCCCTGTGTTCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR-3UTR CAA 90 bp | AGGTTGGCTATGGAAGGGAACACAGGGCAGTGCAGGGATAGGGTCCTGGTGTGCGCTGGAGCAGCAAGGTaGGCTATGGAAGGGAACACA | + |
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Preference number: 3 (lower is better) Translates to: RLAMEGNTGQCRDRVLVCAGAAR*AMEGNT Trigger: TGTGTTCCCTTCCATAGCCAACCTTGCTGCTCCAGC...GCACACCAGGACCCTATCCCTGCACTGCCCTGTGTTCCCTTCCATAGCCAACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR CCA 72 bp | CAGATGTCCCCCAGTGTTTGGCTGGAGCAGCAAGGTTaGCTATGGAAGGGAACACAGGGCAGTGCAGGGATA | + |
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Preference number: 3 (lower is better) Translates to: QMSPSVWLEQQG*LWKGTQGSAGI Trigger: TATCCCTGCACTGCCCTGTGTTCCCTTCCATAGCCAACCTTGCTGCTCCAGCCAAACACTGGGGGACATCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR CCA 72 bp | GAGCTTACAGGATGCAGATGTCCCCCAGTGTTTGGCTaGAGCAGCAAGGTTGGCTATGGAAGGGAACACAGG | + |
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Preference number: 3 (lower is better) Translates to: ELTGCRCPPVFG*SSKVGYGREHR Trigger: CCTGTGTTCCCTTCCATAGCCAACCTTGCTGCTCCAGCCAAACACTGGGGGACATCTGCATCCTGTAAGCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR-3UTR CAA 90 bp | GCCATCTCTCCAGCCACCCACATTCAAATTATTATTCTCAGTGTGGAAGTGAGGGATGTCCCCCAGTGTTaGGCTGGAGCAGCAAGGTTG | + |
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Preference number: 3 (lower is better) Translates to: AISPATHIQIIILSVEVRDVPQC*AGAARL Trigger: CAACCTTGCTGCTCCAGCCAAACACTGGGGGACATC...CCTCACTTCCACACTGAGAATAATAATTTGAATGTGGGTGGCTGGAGAGATGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR TCA 72 bp | CACAGGGAACATCAGACAATGTTGTGTAAAGAGAACTaGGGGCTCTGGATGTCACAGGAGAGACCTGAACAC | + |
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Preference number: 3 (lower is better) Translates to: HREHQTMLCKEN*GLWMSQERPEH Trigger: GTGTTCAGGTCTCTCCTGTGACATCCAGAGCCCTCAGTTCTCTTTACACAACATTGTCTGATGTTCCCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR TCA 72 bp | TTCACGCTAGAGAATGAGAGTCATGAACCATCACTGTaGAGACAACATTCCAGCAACCCACCACTCACTCTC | + |
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Preference number: 3 (lower is better) Translates to: FTLENESHEPSL*RQHSSNPPLTL Trigger: GAGAGTGAGTGGTGGGTTGCTGGAATGTTGTCTTCACAGTGATGGTTCATGACTCTCATTCTCTAGCGTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172503.3 |
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| CDS-3UTR CCA 90 bp | AAGGGAACACAGGGCAGTGCAGGGATAGGGTCCTGGTGTGCAGGGCAGGCTGGGAGAGCTCTGGGAGCCTaGAGCCAGAGCATAGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: KGTQGSAGIGSWCAGQAGRALGA*SQSIVP Trigger: GGGGACTATGCTCTGGCTCCAGGCTCCCAGAGCTCT...CCCAGCCTGCCCTGCACACCAGGACCCTATCCCTGCACTGCCCTGTGTTCCCTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR GCA 90 bp | GGCTCTGGATGTCACAGGAGAGACCTGAACACATCGTCTGTCACTCAGTACAGTGCAGCAGGAGCAGCGTaGGCGGAGCCATCGCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: GSGCHRRDLNTSSVTQYSAAGAA*AEPSPP Trigger: TGGGGGCGATGGCTCCGCGCACGCTGCTCCTGCTGC...ACTGTACTGAGTGACAGACGATGTGTTCAGGTCTCTCCTGTGACATCCAGAGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR CCA 90 bp | AAGGGAACACAGGGCAGTGCAGGGATAGGGTCCTGGTGTGCAGGGCAGGCTGGGCGGAACCACTGCTCTTaGCCCTTGGCTTTCTGTGTT | + |
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Preference number: 4 (lower is better) Translates to: KGTQGSAGIGSWCAGQAGRNHCS*PLAFCV Trigger: AACACAGAAAGCCAAGGGCCAAGAGCAGTGGTTCCG...CCCAGCCTGCCCTGCACACCAGGACCCTATCCCTGCACTGCCCTGTGTTCCCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR GCA 90 bp | GCCATCTCTCCAGCCACCCACATTCAAATTATTATTCTCAGTGTGGAAGTGAGGGCAGCAGGAGCAGCGTaGGCGGAGCCATCGCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: AISPATHIQIIILSVEVRAAGAA*AEPSPP Trigger: TGGGGGCGATGGCTCCGCGCACGCTGCTCCTGCTGC...CCTCACTTCCACACTGAGAATAATAATTTGAATGTGGGTGGCTGGAGAGATGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR TCA 90 bp | GCAGTCAGCGCTGAGCCATCTCTCCAGCCACCCACATTCAAATTATTATTCTCAATCTGCTGGAGTGTGTaGGAGCCGCCCGCGCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: AVSAEPSLQPPTFKLLFSICWSV*EPPALW Trigger: CCAGAGCGCGGGCGGCTCTCACACACTCCAGCAGAT...TGAGAATAATAATTTGAATGTGGGTGGCTGGAGAGATGGCTCAGCGCTGACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR TCA 90 bp | GATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAATCTGCTGGAGTGTGTaGGAGCCGCCCGCGCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: DPITDGCEPPCGCWDLNSICWSV*EPPALW Trigger: CCAGAGCGCGGGCGGCTCTCACACACTCCAGCAGAT...TGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR CAA 72 bp | CCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTaGGAAGAGCAGTCAGCGCTGAGCCATCTCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: PPCGCWDLNSGP*EEQSALSHLSS Trigger: GCTGGAGAGATGGCTCAGCGCTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR CCA 90 bp | TTGGAAGAGCAGTCAGCGCTGAGCCATCTCTCCAGCCACCCACATTCAAATTATAGAGCTCTGGGAGCCTaGAGCCAGAGCATAGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: LEEQSALSHLSSHPHSNYRALGA*SQSIVP Trigger: GGGGACTATGCTCTGGCTCCAGGCTCCCAGAGCTCT...ATAATTTGAATGTGGGTGGCTGGAGAGATGGCTCAGCGCTGACTGCTCTTCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR CCA 90 bp | TGTCACAGGAGAGACCTGAACACATCGTCTGTCACTCAGTACAGTCCAGGCAGCCGGAACCACTGCTCTTaGCCCTTGGCTTTCTGTGTT | + |
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Preference number: 4 (lower is better) Translates to: CHRRDLNTSSVTQYSPGSRNHCS*PLAFCV Trigger: AACACAGAAAGCCAAGGGCCAAGAGCAGTGGTTCCG...GCTGCCTGGACTGTACTGAGTGACAGACGATGTGTTCAGGTCTCTCCTGTGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| 3UTR CAA 72 bp | ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCAGGACCTTTGGAAGAGCAGTCAGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPPCGCWD*NSGPLEEQSAL Trigger: CAGCGCTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR TCA 90 bp | GATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGCGCTGAGCCATCTCTCCAGCCCTTTAGATCTGGGGTaGTGGGTCACATGTGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: DLNSGPLEEQSALSHLSSPLDLG*WVTCAF Trigger: AAAGGCACATGTGACCCATCACCCCAGATCTAAAGG...GCTGGAGAGATGGCTCAGCGCTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR GCA 90 bp | TTGGAAGAGCAGTCAGCGCTGAGCCATCTCTCCAGCCACCCACATTCAAATTATCTCACTCGGAACCACTaGTCTTGGCCCTTGGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: LEEQSALSHLSSHPHSNYLTRNH*SWPLAF Trigger: GAAAGCCAAGGGCCAAGAGCAGTGGTTCCGAGTGAG...ATAATTTGAATGTGGGTGGCTGGAGAGATGGCTCAGCGCTGACTGCTCTTCCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR CCA 90 bp | GGCTCTGGATGTCACAGGAGAGACCTGAACACATCGTCTGTCACTCAGTACAGTACTGCTCTTGGCCCTTaGCTTTCTGTGTTTCCCGCT | + |
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Preference number: 4 (lower is better) Translates to: GSGCHRRDLNTSSVTQYSTALGP*LSVFPA Trigger: AGCGGGAAACACAGAAAGCCAAGGGCCAAGAGCAGT...ACTGTACTGAGTGACAGACGATGTGTTCAGGTCTCTCCTGTGACATCCAGAGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR TCA 90 bp | ATGTCACAGGAGAGACCTGAACACATCGTCTGTCACTCAGTACAGTCCAGGCAGCCTTTAGATCTGGGGTaGTGGGTCACATGTGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: MSQERPEHIVCHSVQSRQPLDLG*WVTCAF Trigger: AAAGGCACATGTGACCCATCACCCCAGATCTAAAGG...CTGCCTGGACTGTACTGAGTGACAGACGATGTGTTCAGGTCTCTCCTGTGACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR CCA 90 bp | AACACATCGTCTGTCACTCAGTACAGTCCAGGCAGCTGTCTTCACGCTAGAGAAACTGCTCTTGGCCCTTaGCTTTCTGTGTTTCCCGCT | + |
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Preference number: 4 (lower is better) Translates to: NTSSVTQYSPGSCLHARETALGP*LSVFPA Trigger: AGCGGGAAACACAGAAAGCCAAGGGCCAAGAGCAGT...TTCTCTAGCGTGAAGACAGCTGCCTGGACTGTACTGAGTGACAGACGATGTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172503.3 |
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| CDS-3UTR CCA 90 bp | CACACTGAACCCAAGCTCACAGGGAACATCAGACAATGTTGTGTAAAGAGAACTGGTCACATGTGCCTTTaGGGAATCTGTGCGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: HTEPKLTGNIRQCCVKRTGHMCL*GICAQQ Trigger: CTGCTGCGCACAGATTCCCCAAAGGCACATGTGACC...AGTTCTCTTTACACAACATTGTCTGATGTTCCCTGTGAGCTTGGGTTCAGTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR TCA 90 bp | GCTGAGCCATCTCTCCAGCCACCCACATTCAAATTATTATTCTCAGTGTGGAAGCTCCTTTTCCACCTGTaGAAAGAAAAGCTGTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: AEPSLQPPTFKLLFSVWKLLFHL*KEKLCF Trigger: GAAACACAGCTTTTCTTTTCACAGGTGGAAAAGGAG...CTTCCACACTGAGAATAATAATTTGAATGTGGGTGGCTGGAGAGATGGCTCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172503.3 |
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| CDS-3UTR CAA 90 bp | AGGAGAGACCTGAACACATCGTCTGTCACTCAGTACAGTCCAGGCAGCTGTCTTGGGTCACATGTGCCTTaGGGGAATCTGTGCGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: RRDLNTSSVTQYSPGSCLGSHVP*GNLCAA Trigger: TGCTGCGCACAGATTCCCCAAAGGCACATGTGACCC...AAGACAGCTGCCTGGACTGTACTGAGTGACAGACGATGTGTTCAGGTCTCTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172503.3 |
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| CDS-3UTR CAA 90 bp | ACCATCACTGTGAAGACAACATTCCAGCAACCCACCACTCACTCTCAGGAGATTTCGGAACCACTGCTCTaGGCCCTTGGCTTTCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: TITVKTTFQQPTTHSQEISEPLL*ALGFLC Trigger: ACACAGAAAGCCAAGGGCCAAGAGCAGTGGTTCCGA...AATCTCCTGAGAGTGAGTGGTGGGTTGCTGGAATGTTGTCTTCACAGTGATGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172503.3 |
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| CDS-3UTR CAA 90 bp | ACAGTTCTTCACACTGAACCCAAGCTCACAGGGAACATCAGACAATGTTGTGTACACTGCTCTTGGCCCTaGGCTTTCTGTGTTTCCCGC | + |
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Preference number: 5 (lower is better) Translates to: TVLHTEPKLTGNIRQCCVHCSWP*AFCVSR Trigger: GCGGGAAACACAGAAAGCCAAGGGCCAAGAGCAGTG...TACACAACATTGTCTGATGTTCCCTGTGAGCTTGGGTTCAGTGTGAAGAACTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR CAA 90 bp | ATCTCTCCAGCCACCCACATTCAAATTATTATTCTCAGTGTGGAAGTGAGGAGCCACTGCTCTTGGCCCTaGGCTTTCTGTGTTTCCCGC | + |
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Preference number: 5 (lower is better) Translates to: ISPATHIQIIILSVEVRSHCSWP*AFCVSR Trigger: GCGGGAAACACAGAAAGCCAAGGGCCAAGAGCAGTG...GCTCCTCACTTCCACACTGAGAATAATAATTTGAATGTGGGTGGCTGGAGAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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| CDS-3UTR CAA 90 bp | GCTGAGCCATCTCTCCAGCCACCCACATTCAAATTATTATTCTCAGTGTGGAAGTCGGAACCACTGCTCTaGGCCCTTGGCTTTCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: AEPSLQPPTFKLLFSVWKSEPLL*ALGFLC Trigger: ACACAGAAAGCCAAGGGCCAAGAGCAGTGGTTCCGA...CTTCCACACTGAGAATAATAATTTGAATGTGGGTGGCTGGAGAGATGGCTCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000172503.3 ENSMUST00000172785.8 |
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