RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for H2-BL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073406

Ensembl transcript IDs: ENSMUST00000173080.10, ENSMUST00000183560.8, ENSMUST00000183999.8, ENSMUST00000184502.8, ENSMUST00000185087.8, ENSMUST00000185167.8, ENSMUST00000194244.6, ENSMUST00000195833.6, ENSMUST00000195838.6

Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp CAGCTATGTTTACCATGTTGGAGCCGGTGGATGGAGGAGGCTCCCATCTCAGGGGGTCACATGTGCCTTTaGGGGATCTGTGCGCAGCAG +
Preference number: 2 (lower is better)
Translates to: QLCLPCWSRWMEEAPISGGHMCL*GICAQQ
Trigger: CTGCTGCGCACAGATCCCCCAAAGGCACATGTGACC...CCCTGAGATGGGAGCCTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000185087.8
3UTR-3UTR GCA 90 bp CCAGAACAGCTATGTTTACCATGTTGGAGCCGGTGGATGGAGGAGGCTCCCATCCAGGGTGACATCACCTaGAGGTCTGGGATGATGGGT +
Preference number: 2 (lower is better)
Translates to: PEQLCLPCWSRWMEEAPIQGDIT*RSGMMG
Trigger: ACCCATCATCCCAGACCTGCAGGTGATGTCACCCTG...GATGGGAGCCTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000185087.8
ENSMUST00000185167.8
3UTR-3UTR CCA 90 bp CAAGGACAACCAGAACAGCTATGTTTACCATGTTGGAGCCGGTGGATGGAGGAGGGTCACATGTGCCTTTaGGGGATCGCCCTTGCTCTG +
Preference number: 2 (lower is better)
Translates to: QGQPEQLCLPCWSRWMEEGHMCL*GIALAL
Trigger: CAGAGCAAGGGCGATCCCCCAAAGGCACATGTGACC...CTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTGGTTGTCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185167.8
3UTR-3UTR CCA 90 bp GAACAGCTATGTTTACCATGTTGGAGCCGGTGGATGGAGGAGGCTCCCATCTCACATCACCTGCAGGTCTaGGATGATGGGTCACATGTG +
Preference number: 2 (lower is better)
Translates to: EQLCLPCWSRWMEEAPISHHLQV*DDGSHV
Trigger: CACATGTGACCCATCATCCCAGACCTGCAGGTGATG...TGAGATGGGAGCCTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000185087.8
ENSMUST00000185167.8
3UTR-3UTR TCA 90 bp AGGAAGGATGGCTATTTTTCTGCTGCTCTTCAACACAAAAGCCACCATAGCTTCCCCAGCACCTCAGGGTaGCATCACCTGCAGGTCTGG +
Preference number: 2 (lower is better)
Translates to: RKDGYFSAALQHKSHHSFPSTSG*HHLQVW
Trigger: CCAGACCTGCAGGTGATGTCACCCTGAGGTGCTGGG...GAAGCTATGGTGGCTTTTGTGTTGAAGAGCAGCAGAAAAATAGCCATCCTTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000185087.8
ENSMUST00000185167.8
3UTR-3UTR CCA 90 bp GATGATCCCTTAGTGCCTGCTGGACCAGGAAGGATGGCTATTTTTCTGCTGCTCCATCACCTGCAGGTCTaGGATGATGGGTCACATGTG +
Preference number: 2 (lower is better)
Translates to: DDPLVPAGPGRMAIFLLLHHLQV*DDGSHV
Trigger: CACATGTGACCCATCATCCCAGACCTGCAGGTGATG...GAGCAGCAGAAAAATAGCCATCCTTCCTGGTCCAGCAGGCACTAAGGGATCATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000185087.8
ENSMUST00000185167.8
3UTR-3UTR GCA 90 bp GTGCCTGCTGGACCAGGAAGGATGGCTATTTTTCTGCTGCTCTTCAACACAAAACAGGGTGACATCACCTaGAGGTCTGGGATGATGGGT +
Preference number: 2 (lower is better)
Translates to: VPAGPGRMAIFLLLFNTKQGDIT*RSGMMG
Trigger: ACCCATCATCCCAGACCTGCAGGTGATGTCACCCTG...TTTTGTGTTGAAGAGCAGCAGAAAAATAGCCATCCTTCCTGGTCCAGCAGGCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000185087.8
ENSMUST00000185167.8
3UTR-3UTR GCA 90 bp GGCTATTTTTCTGCTGCTCTTCAACACAAAAGCCACCATAGCTTCAATGATGATCCTTTGGGGGATCTGTaGGCAGCAGCGTCTCCTTCC +
Preference number: 2 (lower is better)
Translates to: GYFSAALQHKSHHSFNDDPLGDL*AAASPS
Trigger: GGAAGGAGACGCTGCTGCGCACAGATCCCCCAAAGG...ATCATCATTGAAGCTATGGTGGCTTTTGTGTTGAAGAGCAGCAGAAAAATAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000185087.8
3UTR CCA 72 bp CAGAACAGCTATGTTTACCATGTTGGAGCCGGTGGATaGAGGAGGCTCCCATCTCAGGGTGAGGGGCTCAGG +
Preference number: 3 (lower is better)
Translates to: QNSYVYHVGAGG*RRLPSQGEGLR
Trigger: CCTGAGCCCCTCACCCTGAGATGGGAGCCTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000185087.8
ENSMUST00000185167.8
3UTR-3UTR CAA 90 bp CAAGGACAACCAGAACAGCTATGTTTACCATGTTGGAGCCGGTGGATGGAGGAGGGGTCACATGTGCCTTaGGGGGATCTGTGCGCAGCA +
Preference number: 3 (lower is better)
Translates to: QGQPEQLCLPCWSRWMEEGSHVP*GDLCAA
Trigger: TGCTGCGCACAGATCCCCCAAAGGCACATGTGACCC...CTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTGGTTGTCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000185087.8
3UTR-3UTR CAA 90 bp TCCCTTAGTGCCTGCTGGACCAGGAAGGATGGCTATTTTTCTGCTGCTCTTCAAGGGTCACATGTGCCTTaGGGGGATCGCCCTTGCTCT +
Preference number: 3 (lower is better)
Translates to: SLSACWTRKDGYFSAALQGSHVP*GDRPCS
Trigger: AGAGCAAGGGCGATCCCCCAAAGGCACATGTGACCC...TTGAAGAGCAGCAGAAAAATAGCCATCCTTCCTGGTCCAGCAGGCACTAAGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000185167.8
3UTR-3UTR CAA 90 bp CAAGGACAACCAGAACAGCTATGTTTACCATGTTGGAGCCGGTGGATGGAGGAGCCGAAACTCTGCTCATaGTCCTTGGCGATCTGTGTT +
Preference number: 3 (lower is better)
Translates to: QGQPEQLCLPCWSRWMEEPKLCS*SLAICV
Trigger: AACACAGATCGCCAAGGACAATGAGCAGAGTTTCGG...CTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTGGTTGTCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185167.8
CDS-3UTR GCA 90 bp GATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCCCTTTGGGGGATCTGTaGGCAGCAGCGTCTCCTTCC +
Preference number: 4 (lower is better)
Translates to: DSYVQCGSEELQLRAAWSPLGDL*AAASPS
Trigger: GGAAGGAGACGCTGCTGCGCACAGATCCCCCAAAGG...GCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000173080.10
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp GATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCGTTGGAGCCGGTGGATaGAGGAGGCTCCCATCTCAG +
Preference number: 4 (lower is better)
Translates to: DSYVQCGSEELQLRAAWSVGAGG*RRLPSQ
Trigger: CTGAGATGGGAGCCTCCTCCATCCACCGGCTCCAAC...GCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000173080.10
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp ATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCTGGTCACATGTGCCTTTaGGGGATCCGCGCGAGTCTC +
Preference number: 4 (lower is better)
Translates to: ILMFSVVVRSCSSGQHGAGHMCL*GIRASL
Trigger: GAGACTCGCGCGGATCCCCCAAAGGCACATGTGACC...AGCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183999.8
CDS-3UTR GCA 90 bp ATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCTGGATGGAGGAGGCTCTaGAGGTCTGGGATGATGGGT +
Preference number: 4 (lower is better)
Translates to: ILMFSVVVRSCSSGQHGAGWRRL*RSGMMG
Trigger: ACCCATCATCCCAGACCTGCAGAGCCTCCTCCATCC...AGCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183999.8
CDS-3UTR CCA 90 bp ATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCTGGTCACATGTGCCTTTaGGGGATCGCCCTTGCTCTG +
Preference number: 4 (lower is better)
Translates to: ILMFSVVVRSCSSGQHGAGHMCL*GIALAL
Trigger: CAGAGCAAGGGCGATCCCCCAAAGGCACATGTGACC...AGCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000194244.6
ENSMUST00000195833.6
CDS-3UTR CCA 90 bp GATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCTCCCTTAGTGCCTGCTaGACCAGGAAGGATGGCTAT +
Preference number: 4 (lower is better)
Translates to: DSYVQCGSEELQLRAAWSSLSAC*TRKDGY
Trigger: ATAGCCATCCTTCCTGGTCCAGCAGGCACTAAGGGA...GCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
3UTR CAA 72 bp ATCAGGTTCCTCAGGCTCCATCCGAAACTCTGCTCATaGTCCTTGGCGATCTGTGTTTCCCGCTCCCAATAC +
Preference number: 4 (lower is better)
Translates to: IRFLRLHPKLCS*SLAICVSRSQY
Trigger: GTATTGGGAGCGGGAAACACAGATCGCCAAGGACAATGAGCAGAGTTTCGGATGGAGCCTGAGGAACCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185167.8
CDS-3UTR CCA 90 bp ATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCTTCCCTTAGTGCCTGCTaGACCAGGAAGGATGGCTAT +
Preference number: 4 (lower is better)
Translates to: ILMFSVVVRSCSSGQHGASLSAC*TRKDGY
Trigger: ATAGCCATCCTTCCTGGTCCAGCAGGCACTAAGGGA...AGCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp GATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCCTGGACCAGGAAGGATaGCTATTTTTCTGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: DSYVQCGSEELQLRAAWSLDQEG*LFFCCS
Trigger: AGAGCAGCAGAAAAATAGCCATCCTTCCTGGTCCAG...GCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp ATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCTCTGGACCAGGAAGGATaGCTATTTTTCTGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: ILMFSVVVRSCSSGQHGALDQEG*LFFCCS
Trigger: AGAGCAGCAGAAAAATAGCCATCCTTCCTGGTCCAG...AGCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp GATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGGGTTGGAGCCGGTGGATaGAGGAGGCTCTGTGCGCAG +
Preference number: 4 (lower is better)
Translates to: DLSNQVHIQILMFSVVVRVGAGG*RRLCAQ
Trigger: CTGCGCACAGAGCCTCCTCCATCCACCGGCTCCAAC...CCTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184502.8
CDS-3UTR TCA 90 bp AGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGCCCAGCACCTCAGGGTaGCATCACCTGCAGGTCTGG +
Preference number: 4 (lower is better)
Translates to: RFEQSSSHSDSYVQCGSEPSTSG*HHLQVW
Trigger: CCAGACCTGCAGGTGATGTCACCCTGAGGTGCTGGG...CTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000173080.10
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR GCA 90 bp GATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGGCCTTTGGGGGATCTGTaGGCAGCAGCGTCTCCTTCC +
Preference number: 4 (lower is better)
Translates to: DLSNQVHIQILMFSVVVRPLGDL*AAASPS
Trigger: GGAAGGAGACGCTGCTGCGCACAGATCCCCCAAAGG...CCTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000173080.10
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp GATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGGGTTGGAGCCGGTGGATaGAGGAGGCTCCCATCTCAG +
Preference number: 4 (lower is better)
Translates to: DLSNQVHIQILMFSVVVRVGAGG*RRLPSQ
Trigger: CTGAGATGGGAGCCTCCTCCATCCACCGGCTCCAAC...CCTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000173080.10
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp CAAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGTTGGAGCCGGTGGATaGAGGAGGCTCCGCGCGAGT +
Preference number: 4 (lower is better)
Translates to: QRFEQSSSHSDSYVQCGSVGAGG*RRLRAS
Trigger: ACTCGCGCGGAGCCTCCTCCATCCACCGGCTCCAAC...ACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183560.8
CDS-3UTR TCA 90 bp AAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGCCCAGCACCTCAGGGTaGCATCACCTGCAGGTCTGG +
Preference number: 4 (lower is better)
Translates to: KDLSNQVHIQILMFSVVVPSTSG*HHLQVW
Trigger: CCAGACCTGCAGGTGATGTCACCCTGAGGTGCTGGG...CACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000173080.10
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR GCA 90 bp ATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCTTGGCTATTTTTCTGCTaGTCTTCAACACAAAAGCCA +
Preference number: 4 (lower is better)
Translates to: ILMFSVVVRSCSSGQHGAWLFFC*SSTQKP
Trigger: TGGCTTTTGTGTTGAAGAGCAGCAGAAAAATAGCCA...AGCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR GCA 90 bp ATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCTGGATGGCTATTTTTCTaGTGCTCTTCAACACAAAAG +
Preference number: 4 (lower is better)
Translates to: ILMFSVVVRSCSSGQHGAGWLFF*CSSTQK
Trigger: CTTTTGTGTTGAAGAGCAGCAGAAAAATAGCCATCC...AGCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp AGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGGTTGGAGCCGGTGGATaGAGGAGGCTCTGCAGGTCT +
Preference number: 4 (lower is better)
Translates to: RFEQSSSHSDSYVQCGSEVGAGG*RRLCRS
Trigger: AGACCTGCAGAGCCTCCTCCATCCACCGGCTCCAAC...CTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183999.8
CDS-3UTR GCA 90 bp GATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGGCAGGGTGACATCACCTaGAGGTCTGGGATGATGGGT +
Preference number: 4 (lower is better)
Translates to: DLSNQVHIQILMFSVVVRQGDIT*RSGMMG
Trigger: ACCCATCATCCCAGACCTGCAGGTGATGTCACCCTG...CCTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000173080.10
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR GCA 90 bp AAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGATGGAGGAGGCTCTGTaGGCAGCAGCGTCTCCTTCC +
Preference number: 4 (lower is better)
Translates to: KDLSNQVHIQILMFSVVVMEEAL*AAASPS
Trigger: GGAAGGAGACGCTGCTGCGCACAGAGCCTCCTCCAT...CACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184502.8
CDS-3UTR CCA 90 bp AGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGGGTCACATGTGCCTTTaGGGGATCGCCCTTGCTCTG +
Preference number: 4 (lower is better)
Translates to: RFEQSSSHSDSYVQCGSEGHMCL*GIALAL
Trigger: CAGAGCAAGGGCGATCCCCCAAAGGCACATGTGACC...CTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000194244.6
ENSMUST00000195833.6
CDS-3UTR CCA 90 bp GATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGGTCCCTTAGTGCCTGCTaGACCAGGAAGGATGGCTAT +
Preference number: 4 (lower is better)
Translates to: DLSNQVHIQILMFSVVVRSLSAC*TRKDGY
Trigger: ATAGCCATCCTTCCTGGTCCAGCAGGCACTAAGGGA...CCTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp AGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGGAGGCTCTGCAGGTCTaGGATGATGGGTCACATGTG +
Preference number: 4 (lower is better)
Translates to: RFEQSSSHSDSYVQCGSEEALQV*DDGSHV
Trigger: CACATGTGACCCATCATCCCAGACCTGCAGAGCCTC...CTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183999.8
CDS-3UTR GCA 90 bp CAAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTCAGGGTGACATCACCTaGAGGTCTGGGATGATGGGT +
Preference number: 4 (lower is better)
Translates to: QRFEQSSSHSDSYVQCGSQGDIT*RSGMMG
Trigger: ACCCATCATCCCAGACCTGCAGGTGATGTCACCCTG...ACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000173080.10
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp AGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGCATCACCTGCAGGTCTaGGATGATGGGTCACATGTG +
Preference number: 4 (lower is better)
Translates to: RFEQSSSHSDSYVQCGSEHHLQV*DDGSHV
Trigger: CACATGTGACCCATCATCCCAGACCTGCAGGTGATG...CTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000173080.10
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp CTCAAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTACATCACCTGCAGGTCTaGGATGATGGGTCACATGTG +
Preference number: 4 (lower is better)
Translates to: LKDLSNQVHIQILMFSVVHHLQV*DDGSHV
Trigger: CACATGTGACCCATCATCCCAGACCTGCAGGTGATG...TACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000173080.10
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp CAAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTCATCACCTGCAGGTCTaGGATGATGGGTCACATGTG +
Preference number: 4 (lower is better)
Translates to: QRFEQSSSHSDSYVQCGSHHLQV*DDGSHV
Trigger: CACATGTGACCCATCATCCCAGACCTGCAGGTGATG...ACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000173080.10
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp AAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGTCCCTTAGTGCCTGCTaGACCAGGAAGGATGGCTAT +
Preference number: 4 (lower is better)
Translates to: KDLSNQVHIQILMFSVVVSLSAC*TRKDGY
Trigger: ATAGCCATCCTTCCTGGTCCAGCAGGCACTAAGGGA...CACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp CTCAAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTATCCCTTAGTGCCTGCTaGACCAGGAAGGATGGCTAT +
Preference number: 4 (lower is better)
Translates to: LKDLSNQVHIQILMFSVVSLSAC*TRKDGY
Trigger: ATAGCCATCCTTCCTGGTCCAGCAGGCACTAAGGGA...TACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp CAAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTCTGGACCAGGAAGGATaGCTATTTTTCTGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: QRFEQSSSHSDSYVQCGSLDQEG*LFFCCS
Trigger: AGAGCAGCAGAAAAATAGCCATCCTTCCTGGTCCAG...ACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp CTCAAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTACTGGACCAGGAAGGATaGCTATTTTTCTGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: LKDLSNQVHIQILMFSVVLDQEG*LFFCCS
Trigger: AGAGCAGCAGAAAAATAGCCATCCTTCCTGGTCCAG...TACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTTGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CCA 90 bp AAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGCTGGACCAGGAAGGATaGCTATTTTTCTGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: KDLSNQVHIQILMFSVVVLDQEG*LFFCCS
Trigger: AGAGCAGCAGAAAAATAGCCATCCTTCCTGGTCCAG...CACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR GCA 90 bp AGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGGGATGGCTATTTTTCTaGTGCTCTTCAACACAAAAG +
Preference number: 4 (lower is better)
Translates to: RFEQSSSHSDSYVQCGSEGWLFF*CSSTQK
Trigger: CTTTTGTGTTGAAGAGCAGCAGAAAAATAGCCATCC...CTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR GCA 90 bp CTCAAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGGATGGCTATTTTTCTaGTGCTCTTCAACACAAAAG +
Preference number: 4 (lower is better)
Translates to: LKDLSNQVHIQILMFSVVGWLFF*CSSTQK
Trigger: CTTTTGTGTTGAAGAGCAGCAGAAAAATAGCCATCC...TACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTTGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR GCA 90 bp AAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGGGATGGCTATTTTTCTaGTGCTCTTCAACACAAAAG +
Preference number: 4 (lower is better)
Translates to: KDLSNQVHIQILMFSVVVGWLFF*CSSTQK
Trigger: CTTTTGTGTTGAAGAGCAGCAGAAAAATAGCCATCC...CACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000173080.10
ENSMUST00000183560.8
ENSMUST00000183999.8
ENSMUST00000184502.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS CCA 90 bp CTCCAAGGACAACCAGAACAGCTATGTTTACCATGTTGGAGCCGGTaGATGGAGGAGGCTCTGTGCGCAGCAGCGTCTCCTTCCCGAGCT +
Preference number: 5 (lower is better)
Translates to: LQGQPEQLCLPCWSR*MEEALCAAASPSRA
Trigger: AGCTCGGGAAGGAGACGCTGCTGCGCACAGAGCCTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTGGTTGTCCTTGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184502.8
CDS-3UTR CAA 90 bp ATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCTGGGTCACATGTGCCTTaGGGGGATCTGTGCGCAGCA +
Preference number: 5 (lower is better)
Translates to: ILMFSVVVRSCSSGQHGAGSHVP*GDLCAA
Trigger: TGCTGCGCACAGATCCCCCAAAGGCACATGTGACCC...AGCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000173080.10
ENSMUST00000195838.6
CDS-3UTR CAA 90 bp ATTCTTATGTTCAGTGTGGTAGTGAGGAGCTGCAGCTCAGGGCAGCATGGAGCTGGGTCACATGTGCCTTaGGGGGATCGCCCTTGCTCT +
Preference number: 5 (lower is better)
Translates to: ILMFSVVVRSCSSGQHGAGSHVP*GDRPCS
Trigger: AGAGCAAGGGCGATCCCCCAAAGGCACATGTGACCC...AGCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTACCACACTGAACATAAGAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000194244.6
ENSMUST00000195833.6
CDS-3UTR CAA 90 bp CCAAGGACAACCAGAACAGCTATGTTTACCATGTTGGAGCCGGTGGATGGAGGACCGAAACTCTGCTCATaGTCCTTGGCGATCTGTGTT +
Preference number: 5 (lower is better)
Translates to: PRTTRTAMFTMLEPVDGGPKLCS*SLAICV
Trigger: AACACAGATCGCCAAGGACAATGAGCAGAGTTTCGG...TCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTGGTTGTCCTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185087.8
CDS-3UTR CAA 90 bp GATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGGGGGTCACATGTGCCTTaGGGGGATCCGCGCGAGTCT +
Preference number: 5 (lower is better)
Translates to: DLSNQVHIQILMFSVVVRGSHVP*GDPRES
Trigger: AGACTCGCGCGGATCCCCCAAAGGCACATGTGACCC...CCTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000183999.8
CDS-3UTR CAA 90 bp GATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGGGGGTCACATGTGCCTTaGGGGGATCTGTGCGCAGCA +
Preference number: 5 (lower is better)
Translates to: DLSNQVHIQILMFSVVVRGSHVP*GDLCAA
Trigger: TGCTGCGCACAGATCCCCCAAAGGCACATGTGACCC...CCTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000173080.10
ENSMUST00000195838.6
CDS-3UTR CAA 90 bp AAAGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGGGGTCACATGTGCCTTaGGGGGATCGCCCTTGCTCT +
Preference number: 5 (lower is better)
Translates to: KDLSNQVHIQILMFSVVVGSHVP*GDRPCS
Trigger: AGAGCAAGGGCGATCCCCCAAAGGCACATGTGACCC...CACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000194244.6
ENSMUST00000195833.6
CDS-3UTR CAA 90 bp GATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGGCCGAAACTCTGCTCATaGTCCTTGGCGATCTGTGTT +
Preference number: 5 (lower is better)
Translates to: DLSNQVHIQILMFSVVVRPKLCS*SLAICV
Trigger: AACACAGATCGCCAAGGACAATGAGCAGAGTTTCGG...CCTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000173080.10
ENSMUST00000184502.8
ENSMUST00000185087.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS-3UTR CAA 90 bp AGATTTGAGCAATCAAGTTCACATTCAGATTCTTATGTTCAGTGTGGTAGTGAGCCGAAACTCTGCTCATaGTCCTTGGCGATCTGTGTT +
Preference number: 5 (lower is better)
Translates to: RFEQSSSHSDSYVQCGSEPKLCS*SLAICV
Trigger: AACACAGATCGCCAAGGACAATGAGCAGAGTTTCGG...CTCACTACCACACTGAACATAAGAATCTGAATGTGAACTTGATTGCTCAAATCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000173080.10
ENSMUST00000184502.8
ENSMUST00000185087.8
ENSMUST00000194244.6
ENSMUST00000195833.6
ENSMUST00000195838.6
CDS CCA 72 bp CAGAACAGCTATGTTTACCATGTTGGAGCCGGTGGATaGAGGAGGCTCTGTGCGCAGCAGCGTCTCCTTCCC +
Preference number: 6 (lower is better)
Translates to: QNSYVYHVGAGG*RRLCAQQRLLP
Trigger: GGGAAGGAGACGCTGCTGCGCACAGAGCCTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184502.8
CDS CCA 72 bp CAGAACAGCTATGTTTACCATGTTGGAGCCGGTGGATaGAGGAGGCTCTGCAGGTCTGGGATGATGGGTCAC +
Preference number: 6 (lower is better)
Translates to: QNSYVYHVGAGG*RRLCRSGMMGH
Trigger: GTGACCCATCATCCCAGACCTGCAGAGCCTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183999.8
CDS CCA 72 bp CAACCAGAACAGCTATGTTTACCATGTTGGAGCCGGTaGATGGAGGAGGCTCTGCAGGTCTGGGATGATGGG +
Preference number: 6 (lower is better)
Translates to: QPEQLCLPCWSR*MEEALQVWDDG
Trigger: CCCATCATCCCAGACCTGCAGAGCCTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTGGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183999.8
CDS CCA 72 bp CTCCAAGGACAACCAGAACAGCTATGTTTACCATGTTaGAGCCGGTGGATGGAGGAGGCTCTGCAGGTCTGG +
Preference number: 6 (lower is better)
Translates to: LQGQPEQLCLPC*SRWMEEALQVW
Trigger: CCAGACCTGCAGAGCCTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTGGTTGTCCTTGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183999.8
CDS CCA 72 bp CAGAACAGCTATGTTTACCATGTTGGAGCCGGTGGATaGAGGAGGCTCCGCGCGAGTCTCGATCATAGTCAG +
Preference number: 6 (lower is better)
Translates to: QNSYVYHVGAGG*RRLRASLDHSQ
Trigger: CTGACTATGATCGAGACTCGCGCGGAGCCTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183560.8
CDS CCA 72 bp CTCCAAGGACAACCAGAACAGCTATGTTTACCATGTTaGAGCCGGTGGATGGAGGAGGCTCTGTGCGCAGCA +
Preference number: 6 (lower is better)
Translates to: LQGQPEQLCLPC*SRWMEEALCAA
Trigger: TGCTGCGCACAGAGCCTCCTCCATCCACCGGCTCCAACATGGTAAACATAGCTGTTCTGGTTGTCCTTGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184502.8