Pregenerated sensors for H2-AA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036594Ensembl transcript IDs: ENSMUST00000040655.14, ENSMUST00000174751.2
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGAGCTGTGAGAGGGACAGCCTCAGGGTCAAGAGAAAAGCAAGTTaGGGGTCACTTGAAGAAGAGAAAGAACACCATGAATTGGTCCAG | + |
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Preference number: 1 (lower is better) Translates to: VSCERDSLRVKRKAS*GSLEEEKEHHELVQ Trigger: CTGGACCAATTCATGGTGTTCTTTCTCTTCTTCAAGTGACCCCCAACTTGCTTTTCTCTTGACCCTGAGGCTGTCCCTCTCACAGCTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| 3UTR CAA 90 bp | AAAGCAAGTTGGGGGTCACTTGAAGAAGAGAAAGAACACCATGAATaGGTCCAGAAAACACACTGTGCCAGGTCACCCAGCACACCACTT | + |
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Preference number: 2 (lower is better) Translates to: KASWGSLEEEKEHHE*VQKTHCARSPSTPL Trigger: AAGTGGTGTGCTGGGTGACCTGGCACAGTGTGTTTTCTGGACCAATTCATGGTGTTCTTTCTCTTCTTCAAGTGACCCCCAACTTGCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| 3UTR-3UTR TCA 90 bp | TGGTTTTGTGGATCAGGGTCTCTGAGAGAGTCTGCAGTAGATGTAACTTGGAAGAAGTTGGGGGTCACTTaGAGAAGAGAAAGAACACCA | + |
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Preference number: 2 (lower is better) Translates to: WFCGSGSLRESAVDVTWKKLGVT*RRERTP Trigger: TGGTGTTCTTTCTCTTCTTCAAGTGACCCCCAACTT...CTTCCAAGTTACATCTACTGCAGACTCTCTCAGAGACCCTGATCCACAAAACCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| 3UTR-3UTR TCA 90 bp | GGATCAGGGTCTCTGAGAGAGTCTGCAGTAGATGTAACTTGGAAGATGACAGAAAGAGAAAGAACACCATaGATTGGTCCAGAAAACACA | + |
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Preference number: 2 (lower is better) Translates to: GSGSLRESAVDVTWKMTERERTP*IGPENT Trigger: TGTGTTTTCTGGACCAATTCATGGTGTTCTTTCTCT...TTCTGTCATCTTCCAAGTTACATCTACTGCAGACTCTCTCAGAGACCCTGATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| 3UTR TCA 72 bp | ACAAAATTCAGATCAGGGAAGAATTCCAAGGGTGTGTaGGCTGTGAGAGGGACAGCCTCAGGGTCAAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: TKFRSGKNSKGV*AVRGTASGSRE Trigger: TTCTCTTGACCCTGAGGCTGTCCCTCTCACAGCTCACACACCCTTGGAATTCTTCCCTGATCTGAATTTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| 3UTR CCA 72 bp | GAGAGGGACAGCCTCAGGGTCAAGAGAAAAGCAAGTTaGGGGTCACTTGAAGAAGAGAAAGAACACCATGAA | + |
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Preference number: 3 (lower is better) Translates to: ERDSLRVKRKAS*GSLEEEKEHHE Trigger: TTCATGGTGTTCTTTCTCTTCTTCAAGTGACCCCCAACTTGCTTTTCTCTTGACCCTGAGGCTGTCCCTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| 3UTR GCA 72 bp | TTATTGGTTTTGTGGATCAGGGTCTCTGAGAGAGTCTaGAGTAGATGTAACTTGGAAGATGACAGAAAACAA | + |
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Preference number: 3 (lower is better) Translates to: LLVLWIRVSERV*SRCNLEDDRKQ Trigger: TTGTTTTCTGTCATCTTCCAAGTTACATCTACTGCAGACTCTCTCAGAGACCCTGATCCACAAAACCAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| CDS-3UTR GCA 90 bp | AGAGGGACAGCCTCAGGGTCAAGAGAAAAGCAAGTTGGGGGTCACTTGAAGAAGCTGGGTGTCTGGAGGTaGCACCTGATCGCAGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: RGTASGSREKQVGGHLKKLGVWR*HLIAGL Trigger: AAGGCCTGCGATCAGGTGGCACCTCCAGACACCCAG...CTTCTTCAAGTGACCCCCAACTTGCTTTTCTCTTGACCCTGAGGCTGTCCCTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| CDS-3UTR CCA 90 bp | GAGAGGGACAGCCTCAGGGTCAAGAGAAAAGCAAGTTGGGGGTCACTTGAAGAAAAGGCCCTGGGTGTCTaGAGGTGCCACCTGATCGCA | + |
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Preference number: 4 (lower is better) Translates to: ERDSLRVKRKASWGSLEEKALGV*RCHLIA Trigger: TGCGATCAGGTGGCACCTCCAGACACCCAGGGCCTT...TTCTTCAAGTGACCCCCAACTTGCTTTTCTCTTGACCCTGAGGCTGTCCCTCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| CDS-3UTR TCA 90 bp | AGAGGGACAGCCTCAGGGTCAAGAGAAAAGCAAGTTGGGGGTCACTTGAAGAAGTCTGGAGGTGCCACCTaGTCGCAGGCCTTGAATGAT | + |
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Preference number: 4 (lower is better) Translates to: RGTASGSREKQVGGHLKKSGGAT*SQALND Trigger: ATCATTCAAGGCCTGCGATCAGGTGGCACCTCCAGA...CTTCTTCAAGTGACCCCCAACTTGCTTTTCTCTTGACCCTGAGGCTGTCCCTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| CDS-3UTR CCA 90 bp | TTGGTTTTGTGGATCAGGGTCTCTGAGAGAGTCTGCAGTAGATGTAACTTGGAAAAGGCCCTGGGTGTCTaGAGGTGCCACCTGATCGCA | + |
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Preference number: 4 (lower is better) Translates to: LVLWIRVSERVCSRCNLEKALGV*RCHLIA Trigger: TGCGATCAGGTGGCACCTCCAGACACCCAGGGCCTT...TTCCAAGTTACATCTACTGCAGACTCTCTCAGAGACCCTGATCCACAAAACCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| CDS-3UTR GCA 90 bp | TCAAGAGAAAAGCAAGTTGGGGGTCACTTGAAGAAGAGAAAGAACACCATGAATCTGGGTGTCTGGAGGTaGCACCTGATCGCAGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: SREKQVGGHLKKRKNTMNLGVWR*HLIAGL Trigger: AAGGCCTGCGATCAGGTGGCACCTCCAGACACCCAG...ATTCATGGTGTTCTTTCTCTTCTTCAAGTGACCCCCAACTTGCTTTTCTCTTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| CDS-3UTR CCA 90 bp | GGGACAGCCTCAGGGTCAAGAGAAAAGCAAGTTGGGGGTCACTTGAAGAAGAGAAATTCAAATGTGTACTaGCCAATGTCTCCAGGAGAC | + |
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Preference number: 4 (lower is better) Translates to: GTASGSREKQVGGHLKKRNSNVY*PMSPGD Trigger: GTCTCCTGGAGACATTGGCCAGTACACATTTGAATT...TCTCTTCTTCAAGTGACCCCCAACTTGCTTTTCTCTTGACCCTGAGGCTGTCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040655.14 |
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| CDS-3UTR TCA 90 bp | TCAAGAGAAAAGCAAGTTGGGGGTCACTTGAAGAAGAGAAAGAACACCATGAATTCTGGAGGTGCCACCTaGTCGCAGGCCTTGAATGAT | + |
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Preference number: 4 (lower is better) Translates to: SREKQVGGHLKKRKNTMNSGGAT*SQALND Trigger: ATCATTCAAGGCCTGCGATCAGGTGGCACCTCCAGA...ATTCATGGTGTTCTTTCTCTTCTTCAAGTGACCCCCAACTTGCTTTTCTCTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| 3UTR CAA 72 bp | GCCTCAGGGTCAAGAGAAAAGCAAGTTGGGGGTCACTaGAAGAAGAGAAAGAACACCATGAATTGGTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: ASGSREKQVGGH*KKRKNTMNWSR Trigger: TCTGGACCAATTCATGGTGTTCTTTCTCTTCTTCAAGTGACCCCCAACTTGCTTTTCTCTTGACCCTGAGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| CDS-3UTR TCA 90 bp | GATGACAGAAAACAAAATTCAGATCAGGGAAGAATTCCAAGGGTGTGTGAGCTGAGCTGGGGTGGAATTTaGCCTCTTAGTCAAGACTCC | + |
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Preference number: 4 (lower is better) Translates to: DDRKQNSDQGRIPRVCELSWGGI*PLSQDS Trigger: GGAGTCTTGACTAAGAGGTCAAATTCCACCCCAGCT...CAGCTCACACACCCTTGGAATTCTTCCCTGATCTGAATTTTGTTTTCTGTCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040655.14 |
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| CDS-3UTR GCA 90 bp | AGGGTCAAGAGAAAAGCAAGTTGGGGGTCACTTGAAGAAGAGAAAGAACACCATACTACAGCTATGTTTTaGAGTCCACCTTGGGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: RVKRKASWGSLEEEKEHHTTAMF*SPPWGS Trigger: TGACCCCCAAGGTGGACTGCAAAACATAGCTGTAGT...ATGGTGTTCTTTCTCTTCTTCAAGTGACCCCCAACTTGCTTTTCTCTTGACCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000040655.14 |
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| CDS-3UTR CCA 90 bp | TCAAGAGAAAAGCAAGTTGGGGGTCACTTGAAGAAGAGAAAGAACACCATGAATTCAAAGCTTGCCAATTaGCCAAACTCAGGAAGCATC | + |
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Preference number: 4 (lower is better) Translates to: SREKQVGGHLKKRKNTMNSKLAN*PNSGSI Trigger: GATGCTTCCTGAGTTTGGCCAATTGGCAAGCTTTGA...ATTCATGGTGTTCTTTCTCTTCTTCAAGTGACCCCCAACTTGCTTTTCTCTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040655.14 |
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| CDS-3UTR CAA 90 bp | AGAAAACACACTGTGCCAGGTCACCCAGCACACCACTTCTTCCCTGAAGAGGGACTTGGGGGTCAAAGCTaGCCAATTGGCCAAACTCAG | + |
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Preference number: 5 (lower is better) Translates to: RKHTVPGHPAHHFFPEEGLGGQS*PIGQTQ Trigger: CTGAGTTTGGCCAATTGGCAAGCTTTGACCCCCAAG...TCCCTCTTCAGGGAAGAAGTGGTGTGCTGGGTGACCTGGCACAGTGTGTTTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040655.14 |
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| CDS-3UTR CAA 90 bp | AGAAAACACACTGTGCCAGGTCACCCAGCACACCACTTCTTCCCTGAAGAGGGACTGAGCCATGTGATGTaGATCACAGGAGGGAAGATG | + |
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Preference number: 5 (lower is better) Translates to: RKHTVPGHPAHHFFPEEGLSHVM*ITGGKM Trigger: CATCTTCCCTCCTGTGATCAACATCACATGGCTCAG...TCCCTCTTCAGGGAAGAAGTGGTGTGCTGGGTGACCTGGCACAGTGTGTTTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| CDS-3UTR CAA 90 bp | TCACTTGAAGAAGAGAAAGAACACCATGAATTGGTCCAGAAAACACACTGTGCCGGGGAACACAGTCGCTaGAGGAGCCTCATTGGTAGC | + |
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Preference number: 5 (lower is better) Translates to: SLEEEKEHHELVQKTHCAGEHSR*RSLIGS Trigger: GCTACCAATGAGGCTCCTCAAGCGACTGTGTTCCCC...GGCACAGTGTGTTTTCTGGACCAATTCATGGTGTTCTTTCTCTTCTTCAAGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040655.14 |
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| CDS-3UTR CAA 90 bp | TATTGGTTTTGTGGATCAGGGTCTCTGAGAGAGTCTGCAGTAGATGTAACTTGGGTCAAAGCTTGCCAATaGGCCAAACTCAGGAAGCAT | + |
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Preference number: 5 (lower is better) Translates to: YWFCGSGSLRESAVDVTWVKACQ*AKLRKH Trigger: ATGCTTCCTGAGTTTGGCCAATTGGCAAGCTTTGAC...CCAAGTTACATCTACTGCAGACTCTCTCAGAGACCCTGATCCACAAAACCAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040655.14 |
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| CDS-3UTR CAA 90 bp | TCACTTGAAGAAGAGAAAGAACACCATGAATTGGTCCAGAAAACACACTGTGCCCTGAGCCATGTGATGTaGATCACAGGAGGGAAGATG | + |
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Preference number: 5 (lower is better) Translates to: SLEEEKEHHELVQKTHCALSHVM*ITGGKM Trigger: CATCTTCCCTCCTGTGATCAACATCACATGGCTCAG...GGCACAGTGTGTTTTCTGGACCAATTCATGGTGTTCTTTCTCTTCTTCAAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040655.14 ENSMUST00000174751.2 |
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| CDS TCA 72 bp | CCCAGCAGCACAGGGGACTTGGGGAACACAGTCGCTTaGGGAGCCTCCTCAATGTCGTCTTCACCTCCACAG | + |
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Preference number: 6 (lower is better) Translates to: PSSTGDLGNTVA*GASSMSSSPPQ Trigger: CTGTGGAGGTGAAGACGACATTGAGGAGGCTCCTCAAGCGACTGTGTTCCCCAAGTCCCCTGTGCTGCTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174751.2 |
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| CDS CAA 72 bp | ACCCAGCAGCACAGGGGACTTGGGGAACACAGTCGCTaGAGGAGCCTCCTCAATGTCGTCTTCACCTCCACA | + |
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Preference number: 6 (lower is better) Translates to: TQQHRGLGEHSR*RSLLNVVFTST Trigger: TGTGGAGGTGAAGACGACATTGAGGAGGCTCCTCAAGCGACTGTGTTCCCCAAGTCCCCTGTGCTGCTGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174751.2 |
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