Pregenerated sensors for H1F6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036211Ensembl transcript IDs: ENSMUST00000041052.5
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GGAAATATTCTACACATAGGGACCCTAGGATTCTACTCTAGGGTTTCAACGACAAGAAACCCCGAGGTTTaGGAGCAGGGGCCAGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: GNILHIGTLGFYSRVSTTRNPEV*EQGPGQ Trigger: CTGGCCTGGCCCCTGCTCGCAAACCTCGGGGTTTCT...TGTCGTTGAAACCCTAGAGTAGAATCCTAGGGTCCCTATGTGTAGAATATTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR TCA 90 bp | GTGTGTTTCAATGGTGACCTTTATTCTGGCGTAAAGCCACAAATACACAACCAAGAGCTTGAAGGAGCCTaGGGCGCCAGTGCCCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: VCFNGDLYSGVKPQIHNQELEGA*GASALG Trigger: ACCAAGGGCACTGGCGCCTCAGGCTCCTTCAAGCTC...TTGGTTGTGTATTTGTGGCTTTACGCCAGAATAAAGGTCACCATTGAAACACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR CCA 90 bp | GGAAATATTCTACACATAGGGACCCTAGGATTCTACTCTAGGGTTTCAACGACACCTCAGGAATCAGCTTaGAAACTGAGAAACCCCGAG | + |
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Preference number: 4 (lower is better) Translates to: GNILHIGTLGFYSRVSTTPQESA*KLRNPE Trigger: CTCGGGGTTTCTCAGTTTCCAAGCTGATTCCTGAGG...TGTCGTTGAAACCCTAGAGTAGAATCCTAGGGTCCCTATGTGTAGAATATTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR CCA 90 bp | GAAGTAACTGCCCACCTTAACTTTGGTTCAAAGTGTTTGGCCATTTTAAGAAGTCCCGTTCCTGCGATGTaGAAAGGGCCTCAGGAATCA | + |
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Preference number: 4 (lower is better) Translates to: EVTAHLNFGSKCLAILRSPVPAM*KGPQES Trigger: TGATTCCTGAGGCCCTTTCCACATCGCAGGAACGGG...ACTTCTTAAAATGGCCAAACACTTTGAACCAAAGTTAAGGTGGGCAGTTACTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR GCA 90 bp | GAAGTAACTGCCCACCTTAACTTTGGTTCAAAGTGTTTGGCCATTTTAAGAAGTCCAGTGCCCTTGGTCTaGACCAGGACTCCTTTATTC | + |
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Preference number: 4 (lower is better) Translates to: EVTAHLNFGSKCLAILRSPVPLV*TRTPLF Trigger: GAATAAAGGAGTCCTGGTGCAGACCAAGGGCACTGG...ACTTCTTAAAATGGCCAAACACTTTGAACCAAAGTTAAGGTGGGCAGTTACTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR GCA 90 bp | GTAACTGCCCACCTTAACTTTGGTTCAAAGTGTTTGGCCATTTTAAGAAGTATGTCACTTCCTCCCTGCTaGCTTCCTCAGATCGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: VTAHLNFGSKCLAILRSMSLPPC*LPQIGL Trigger: AAGACCGATCTGAGGAAGGCAGCAGGGAGGAAGTGA...CATACTTCTTAAAATGGCCAAACACTTTGAACCAAAGTTAAGGTGGGCAGTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR CCA 90 bp | GTAACTGCCCACCTTAACTTTGGTTCAAAGTGTTTGGCCATTTTAAGAAGTATGTTGCCTTCCCAGAATTaGGGTTTGCTGCCCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: VTAHLNFGSKCLAILRSMLPSQN*GLLPWL Trigger: AAGCCAGGGCAGCAAACCCCAATTCTGGGAAGGCAA...CATACTTCTTAAAATGGCCAAACACTTTGAACCAAAGTTAAGGTGGGCAGTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR TCA 90 bp | GAAGTAACTGCCCACCTTAACTTTGGTTCAAAGTGTTTGGCCATTTTAAGAAGTGATCGGTCTTCTGCATaGCCATTTTTGCCTTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: EVTAHLNFGSKCLAILRSDRSSA*PFLPSQ Trigger: CTGGGAAGGCAAAAATGGTCATGCAGAAGACCGATC...ACTTCTTAAAATGGCCAAACACTTTGAACCAAAGTTAAGGTGGGCAGTTACTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR GCA 90 bp | GAAGTAACTGCCCACCTTAACTTTGGTTCAAAGTGTTTGGCCATTTTAAGAAGTCAGAAGCAGATTTCTTaGCCTTGCCCTTGTCGTTCC | + |
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Preference number: 4 (lower is better) Translates to: EVTAHLNFGSKCLAILRSQKQIS*PCPCRS Trigger: GGAACGACAAGGGCAAGGGCAAGAAATCTGCTTCTG...ACTTCTTAAAATGGCCAAACACTTTGAACCAAAGTTAAGGTGGGCAGTTACTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR GCA 90 bp | GGAAATATTCTACACATAGGGACCCTAGGATTCTACTCTAGGGTTTCAACGACACTGCATGACCATTTTTaGCTTCCCAGAATTGGGGTT | + |
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Preference number: 4 (lower is better) Translates to: GNILHIGTLGFYSRVSTTLHDHF*LPRIGV Trigger: AACCCCAATTCTGGGAAGGCAAAAATGGTCATGCAG...TGTCGTTGAAACCCTAGAGTAGAATCCTAGGGTCCCTATGTGTAGAATATTTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR GCA 90 bp | GTGTGTTTCAATGGTGACCTTTATTCTGGCGTAAAGCCACAAATACACAACCAACTCAGATCGGTCTTCTaGATGACCATTTTTGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: VCFNGDLYSGVKPQIHNQLRSVF*MTIFAF Trigger: GAAGGCAAAAATGGTCATGCAGAAGACCGATCTGAG...TTGGTTGTGTATTTGTGGCTTTACGCCAGAATAAAGGTCACCATTGAAACACAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS CCA 90 bp | CTTTCTTCAGGGCAGCAAGGGACATTCCTGCCCGTTCCTGCGATGTaGAAAGGGCCTCAGGAATCAGCTTGGAAACTGAGAAACCCCGAG | + |
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Preference number: 5 (lower is better) Translates to: LSSGQQGTFLPVPAM*KGPQESAWKLRNPE Trigger: CTCGGGGTTTCTCAGTTTCCAAGCTGATTCCTGAGGCCCTTTCCACATCGCAGGAACGGGCAGGAATGTCCCTTGCTGCCCTGAAGAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR CAA 90 bp | GGAAATATTCTACACATAGGGACCCTAGGATTCTACTCTAGGGTTTCAACGACAGGCGGGGCTTTTACGTaGCTGCACGCCCTTGGCCCC | + |
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Preference number: 5 (lower is better) Translates to: GNILHIGTLGFYSRVSTTGGAFT*LHALGP Trigger: GGGGCCAAGGGCGTGCAGCAACGTAAAAGCCCCGCC...TGTCGTTGAAACCCTAGAGTAGAATCCTAGGGTCCCTATGTGTAGAATATTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS CCA 90 bp | TTTGGTCTTCCTTCCGCTCCCAGAAGCTTTTGTGGGCGTAGCCTTTaGCTTCTTGACAGCCTTGGTCTTGCTACTCTTGGGAGATCTCGA | + |
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Preference number: 5 (lower is better) Translates to: FGLPSAPRSFCGRSL*LLDSLGLATLGRSR Trigger: TCGAGATCTCCCAAGAGTAGCAAGACCAAGGCTGTCAAGAAGCCAAAGGCTACGCCCACAAAAGCTTCTGGGAGCGGAAGGAAGACCAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR CAA 90 bp | TGTTTCAATGGTGACCTTTATTCTGGCGTAAAGCCACAAATACACAACCAAATTACGCCCTTGGCCCCTTaGGTCTTCCTTCCGCTCCCA | + |
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Preference number: 5 (lower is better) Translates to: CFNGDLYSGVKPQIHNQITPLAP*VFLPLP Trigger: TGGGAGCGGAAGGAAGACCAAAGGGGCCAAGGGCGT...AATTTGGTTGTGTATTTGTGGCTTTACGCCAGAATAAAGGTCACCATTGAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR CAA 90 bp | GAAGTAACTGCCCACCTTAACTTTGGTTCAAAGTGTTTGGCCATTTTAAGAAGTCGTTGCTGCACGCCCTaGGCCCCTTTGGTCTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: EVTAHLNFGSKCLAILRSRCCTP*APLVFL Trigger: AAGGAAGACCAAAGGGGCCAAGGGCGTGCAGCAACG...ACTTCTTAAAATGGCCAAACACTTTGAACCAAAGTTAAGGTGGGCAGTTACTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR CAA 90 bp | GAAGTAACTGCCCACCTTAACTTTGGTTCAAAGTGTTTGGCCATTTTAAGAAGTGCCTCAGGAATCAGCTaGGAAACTGAGAAACCCCGA | + |
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Preference number: 5 (lower is better) Translates to: EVTAHLNFGSKCLAILRSASGIS*ETEKPR Trigger: TCGGGGTTTCTCAGTTTCCAAGCTGATTCCTGAGGC...ACTTCTTAAAATGGCCAAACACTTTGAACCAAAGTTAAGGTGGGCAGTTACTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR CAA 90 bp | GTAACTGCCCACCTTAACTTTGGTTCAAAGTGTTTGGCCATTTTAAGAAGTATGGCAGAAGCAGATTTCTaGCCCTTGCCCTTGTCGTTC | + |
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Preference number: 5 (lower is better) Translates to: VTAHLNFGSKCLAILRSMAEADF*PLPLSF Trigger: GAACGACAAGGGCAAGGGCAAGAAATCTGCTTCTGC...CATACTTCTTAAAATGGCCAAACACTTTGAACCAAAGTTAAGGTGGGCAGTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR CAA 90 bp | GGAAATATTCTACACATAGGGACCCTAGGATTCTACTCTAGGGTTTCAACGACACCCATCTTCTTAGCCTaGGCAGAAGCAGATTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: GNILHIGTLGFYSRVSTTPIFLA*AEADFL Trigger: CAAGAAATCTGCTTCTGCCAAGGCTAAGAAGATGGG...TGTCGTTGAAACCCTAGAGTAGAATCCTAGGGTCCCTATGTGTAGAATATTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS-3UTR CAA 90 bp | GAAGTAACTGCCCACCTTAACTTTGGTTCAAAGTGTTTGGCCATTTTAAGAAGTGTAGCCTTTGGCTTCTaGACAGCCTTGGTCTTGCTA | + |
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Preference number: 5 (lower is better) Translates to: EVTAHLNFGSKCLAILRSVAFGF*TALVLL Trigger: TAGCAAGACCAAGGCTGTCAAGAAGCCAAAGGCTAC...ACTTCTTAAAATGGCCAAACACTTTGAACCAAAGTTAAGGTGGGCAGTTACTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS TCA 72 bp | CGATGTGGAAAGGGCCTCAGGAATCAGCTTGGAAACTaGGAAACCCCGAGGTTTGCGAGCAGGGGCCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: RCGKGLRNQLGN*ETPRFASRGQA Trigger: GGCCTGGCCCCTGCTCGCAAACCTCGGGGTTTCTCAGTTTCCAAGCTGATTCCTGAGGCCCTTTCCACATCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS CAA 90 bp | GCCCGGGGCAAGCCCATCTTCTTAGCCTTGGCAGAAGCAGATTTCTaGCCCTTGCCCTTGTCGTTCCCAGAAGCCGCCTTCTTACTGAGC | + |
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Preference number: 6 (lower is better) Translates to: ARGKPIFLALAEADF*PLPLSFPEAAFLLS Trigger: GCTCAGTAAGAAGGCGGCTTCTGGGAACGACAAGGGCAAGGGCAAGAAATCTGCTTCTGCCAAGGCTAAGAAGATGGGCTTGCCCCGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS CAA 90 bp | CTCTTGGGAGATCTCGAGGCCCGGGGCAAGCCCATCTTCTTAGCCTaGGCAGAAGCAGATTTCTTGCCCTTGCCCTTGTCGTTCCCAGAA | + |
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Preference number: 6 (lower is better) Translates to: LLGDLEARGKPIFLA*AEADFLPLPLSFPE Trigger: TTCTGGGAACGACAAGGGCAAGGGCAAGAAATCTGCTTCTGCCAAGGCTAAGAAGATGGGCTTGCCCCGGGCCTCGAGATCTCCCAAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS CAA 90 bp | TTCCTTCCGCTCCCAGAAGCTTTTGTGGGCGTAGCCTTTGGCTTCTaGACAGCCTTGGTCTTGCTACTCTTGGGAGATCTCGAGGCCCGG | + |
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Preference number: 6 (lower is better) Translates to: FLPLPEAFVGVAFGF*TALVLLLLGDLEAR Trigger: CCGGGCCTCGAGATCTCCCAAGAGTAGCAAGACCAAGGCTGTCAAGAAGCCAAAGGCTACGCCCACAAAAGCTTCTGGGAGCGGAAGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS CCA 72 bp | GTTCCTGCGATGTGGAAAGGGCCTCAGGAATCAGCTTaGAAACTGAGAAACCCCGAGGTTTGCGAGCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: VPAMWKGPQESA*KLRNPEVCEQG Trigger: CCCCTGCTCGCAAACCTCGGGGTTTCTCAGTTTCCAAGCTGATTCCTGAGGCCCTTTCCACATCGCAGGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS CCA 72 bp | GGGCAGCAAGGGACATTCCTGCCCGTTCCTGCGATGTaGAAAGGGCCTCAGGAATCAGCTTGGAAACTGAGA | + |
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Preference number: 6 (lower is better) Translates to: GQQGTFLPVPAM*KGPQESAWKLR Trigger: TCTCAGTTTCCAAGCTGATTCCTGAGGCCCTTTCCACATCGCAGGAACGGGCAGGAATGTCCCTTGCTGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS CAA 72 bp | CGTTCCTGCGATGTGGAAAGGGCCTCAGGAATCAGCTaGGAAACTGAGAAACCCCGAGGTTTGCGAGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: RSCDVERASGIS*ETEKPRGLRAG Trigger: CCCTGCTCGCAAACCTCGGGGTTTCTCAGTTTCCAAGCTGATTCCTGAGGCCCTTTCCACATCGCAGGAACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS GCA 72 bp | TTCTTCAGGGCAGCAAGGGACATTCCTGCCCGTTCCTaGGATGTGGAAAGGGCCTCAGGAATCAGCTTGGAA | + |
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Preference number: 6 (lower is better) Translates to: FFRAARDIPARS*DVERASGISLE Trigger: TTCCAAGCTGATTCCTGAGGCCCTTTCCACATCGCAGGAACGGGCAGGAATGTCCCTTGCTGCCCTGAAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS CCA 72 bp | CCTTCCGCTCCCAGAAGCTTTTGTGGGCGTAGCCTTTaGCTTCTTGACAGCCTTGGTCTTGCTACTCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: PSAPRSFCGRSL*LLDSLGLATLG Trigger: CCCAAGAGTAGCAAGACCAAGGCTGTCAAGAAGCCAAAGGCTACGCCCACAAAAGCTTCTGGGAGCGGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS CAA 72 bp | AAGCCCATCTTCTTAGCCTTGGCAGAAGCAGATTTCTaGCCCTTGCCCTTGTCGTTCCCAGAAGCCGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: KPIFLALAEADF*PLPLSFPEAAF Trigger: GAAGGCGGCTTCTGGGAACGACAAGGGCAAGGGCAAGAAATCTGCTTCTGCCAAGGCTAAGAAGATGGGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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| CDS CAA 72 bp | TTAGCCTTGGCAGAAGCAGATTTCTTGCCCTTGCCCTaGTCGTTCCCAGAAGCCGCCTTCTTACTGAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LALAEADFLPLP*SFPEAAFLLSL Trigger: CAAGCTCAGTAAGAAGGCGGCTTCTGGGAACGACAAGGGCAAGGGCAAGAAATCTGCTTCTGCCAAGGCTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041052.5 |
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