Pregenerated sensors for H1F4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051627Ensembl transcript IDs: ENSMUST00000062045.4
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCTCTCCTTTCAGTAGCGTTTGCGCTCCTTGTCCTTCTGTTTGTTaGTGGCAGCTTCTAAGAATCCTTCTGTGGGGCAGGCTCGGACTT | + |
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Preference number: 1 (lower is better) Translates to: SSPFSSVCAPCPSVC*WQLLRILLWGRLGL Trigger: AAGTCCGAGCCTGCCCCACAGAAGGATTCTTAGAAGCTGCCATCAACAAACAGAAGGACAAGGAGCGCAAACGCTACTGAAAGGAGAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR GCA 90 bp | GTTGGGTTTGTATGCTTGATTTCAGCAGTCAGAACTGAGATGAGATaGGGGTGGGGTTGTCAGGACATCGATCCTGCTCTTTACGCACTG | + |
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Preference number: 1 (lower is better) Translates to: VGFVCLISAVRTEMR*GWGCQDIDPALYAL Trigger: CAGTGCGTAAAGAGCAGGATCGATGTCCTGACAACCCCACCCGCATCTCATCTCAGTTCTGACTGCTGAAATCAAGCATACAAACCCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR CCA 90 bp | TTTGTATGCTTGATTTCAGCAGTCAGAACTGAGATGAGATGCGGGTaGGGTTGTCAGGACATCGATCCTGCTCTTTACGCACTGAATCGC | + |
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Preference number: 1 (lower is better) Translates to: FVCLISAVRTEMRCG*GCQDIDPALYALNR Trigger: GCGATTCAGTGCGTAAAGAGCAGGATCGATGTCCTGACAACCCCACCCGCATCTCATCTCAGTTCTGACTGCTGAAATCAAGCATACAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR-3UTR CCA 90 bp | CCAGCTTCCTGGGCAATGCAGGAGAATGGCAGTCTGGATCAACTGAGATATGACGAGCCTTTGGGTTGTTaGGCTTCTAAGCAGTTGGCC | + |
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Preference number: 2 (lower is better) Translates to: PASWAMQENGSLDQLRYDEPLGC*ASKQLA Trigger: GGCCAACTGCTTAGAAGCCCAACAACCCAAAGGCTC...GTCATATCTCAGTTGATCCAGACTGCCATTCTCCTGCATTGCCCAGGAAGCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR CAA 90 bp | TCATTCGTGCAAATGCGCACTTGGTTTGTTTTCTTGGTAACAGGCTaGGTGCTCTGCCAGCTTCCTGGGCAATGCAGGAGAATGGCAGTC | + |
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Preference number: 2 (lower is better) Translates to: SFVQMRTWFVFLVTG*VLCQLPGQCRRMAV Trigger: GACTGCCATTCTCCTGCATTGCCCAGGAAGCTGGCAGAGCACCAAGCCTGTTACCAAGAAAACAAACCAAGTGCGCATTTGCACGAATGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR-3UTR TCA 90 bp | AGAACTGAGATGAGATGCGGGTGGGGTTGTCAGGACATCGATCCTGCTCTTTACGTCACTTGTGGGATATaGACTTACCCACCACCACCA | + |
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Preference number: 2 (lower is better) Translates to: RTEMRCGWGCQDIDPALYVTCGI*TYPPPP Trigger: TGGTGGTGGTGGGTAAGTTCATATCCCACAAGTGAC...GTAAAGAGCAGGATCGATGTCCTGACAACCCCACCCGCATCTCATCTCAGTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR-3UTR TCA 90 bp | GTTGTACACTTGCTAGAAGCTCTCCTTTCAGTAGCGTTTGCGCTCCTTGTCCTTTTCAGCAGTCAGAACTaGGATGAGATGCGGGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: VVHLLEALLSVAFALLVLFSSQN*DEMRVG Trigger: CCCCACCCGCATCTCATCTCAGTTCTGACTGCTGAA...AAGGACAAGGAGCGCAAACGCTACTGAAAGGAGAGCTTCTAGCAAGTGTACAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR-3UTR CCA 90 bp | GTTGTACACTTGCTAGAAGCTCTCCTTTCAGTAGCGTTTGCGCTCCTTGTCCTTCTAAGAATCCTTCTGTaGGGCAGGCTCGGACTTCGC | + |
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Preference number: 2 (lower is better) Translates to: VVHLLEALLSVAFALLVLLRILL*GRLGLR Trigger: GCGAAGTCCGAGCCTGCCCCACAGAAGGATTCTTAG...AAGGACAAGGAGCGCAAACGCTACTGAAAGGAGAGCTTCTAGCAAGTGTACAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR-3UTR GCA 90 bp | GTTGTACACTTGCTAGAAGCTCTCCTTTCAGTAGCGTTTGCGCTCCTTGTCCTTAGAACTGAGATGAGATaGGGGTGGGGTTGTCAGGAC | + |
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Preference number: 2 (lower is better) Translates to: VVHLLEALLSVAFALLVLRTEMR*GWGCQD Trigger: GTCCTGACAACCCCACCCGCATCTCATCTCAGTTCT...AAGGACAAGGAGCGCAAACGCTACTGAAAGGAGAGCTTCTAGCAAGTGTACAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR-3UTR CCA 90 bp | GCACGTTGTACACTTGCTAGAAGCTCTCCTTTCAGTAGCGTTTGCGCTCCTTGTGGTCTACTGTCTCATTaGCTGTCTTGTCACTTCGCT | + |
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Preference number: 2 (lower is better) Translates to: ARCTLARSSPFSSVCAPCGLLSH*LSCHFA Trigger: AGCGAAGTGACAAGACAGCCAATGAGACAGTAGACC...ACAAGGAGCGCAAACGCTACTGAAAGGAGAGCTTCTAGCAAGTGTACAACGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR-3UTR GCA 90 bp | GTTGTACACTTGCTAGAAGCTCTCCTTTCAGTAGCGTTTGCGCTCCTTGTCCTTTCAGGACATCGATCCTaGTCTTTACGCACTGAATCG | + |
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Preference number: 2 (lower is better) Translates to: VVHLLEALLSVAFALLVLSGHRS*SLRTES Trigger: CGATTCAGTGCGTAAAGAGCAGGATCGATGTCCTGA...AAGGACAAGGAGCGCAAACGCTACTGAAAGGAGAGCTTCTAGCAAGTGTACAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR-3UTR TCA 90 bp | GTTGTACACTTGCTAGAAGCTCTCCTTTCAGTAGCGTTTGCGCTCCTTGTCCTTTTGGGTTTGTATGCTTaGTTTCAGCAGTCAGAACTG | + |
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Preference number: 2 (lower is better) Translates to: VVHLLEALLSVAFALLVLLGLYA*FQQSEL Trigger: CAGTTCTGACTGCTGAAATCAAGCATACAAACCCAA...AAGGACAAGGAGCGCAAACGCTACTGAAAGGAGAGCTTCTAGCAAGTGTACAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR CAA 90 bp | GGGTTAGTTTTAGTGTTTCGTCACGAACAGGAACGTAAACGACACTaGAAGGTCTACTGTCTCATTGGCTGTCTTGTCACTTCGCTTTCA | + |
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Preference number: 2 (lower is better) Translates to: GLVLVFRHEQERKRH*KVYCLIGCLVTSLS Trigger: TGAAAGCGAAGTGACAAGACAGCCAATGAGACAGTAGACCTTCAAGTGTCGTTTACGTTCCTGTTCGTGACGAAACACTAAAACTAACCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR CAA 90 bp | AACAACAACTCATTTGTTGAAAGAATGCCTGGCTCTTTAAAGTCCTaGAAATCATTCGTGCAAATGCGCACTTGGTTTGTTTTCTTGGTA | + |
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Preference number: 2 (lower is better) Translates to: NNNSFVERMPGSLKS*KSFVQMRTWFVFLV Trigger: TACCAAGAAAACAAACCAAGTGCGCATTTGCACGAATGATTTCAAGGACTTTAAAGAGCCAGGCATTCTTTCAACAAATGAGTTGTTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR GCA 72 bp | ACTTGGTTTGTTTTCTTGGTAACAGGCTTGGTGCTCTaGCAGCTTCCTGGGCAATGCAGGAGAATGGCAGTC | + |
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Preference number: 3 (lower is better) Translates to: TWFVFLVTGLVL*QLPGQCRRMAV Trigger: GACTGCCATTCTCCTGCATTGCCCAGGAAGCTGGCAGAGCACCAAGCCTGTTACCAAGAAAACAAACCAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR TCA 72 bp | TTCAGTAGCGTTTGCGCTCCTTGTCCTTCTGTTTGTTaGTGGCAGCTTCTAAGAATCCTTCTGTGGGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: FSSVCAPCPSVC*WQLLRILLWGR Trigger: CCTGCCCCACAGAAGGATTCTTAGAAGCTGCCATCAACAAACAGAAGGACAAGGAGCGCAAACGCTACTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR GCA 72 bp | GTATGCTTGATTTCAGCAGTCAGAACTGAGATGAGATaGGGGTGGGGTTGTCAGGACATCGATCCTGCTCTT | + |
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Preference number: 3 (lower is better) Translates to: VCLISAVRTEMR*GWGCQDIDPAL Trigger: AAGAGCAGGATCGATGTCCTGACAACCCCACCCGCATCTCATCTCAGTTCTGACTGCTGAAATCAAGCATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR CCA 72 bp | TTGATTTCAGCAGTCAGAACTGAGATGAGATGCGGGTaGGGTTGTCAGGACATCGATCCTGCTCTTTACGCA | + |
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Preference number: 3 (lower is better) Translates to: LISAVRTEMRCG*GCQDIDPALYA Trigger: TGCGTAAAGAGCAGGATCGATGTCCTGACAACCCCACCCGCATCTCATCTCAGTTCTGACTGCTGAAATCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR-3UTR CAA 90 bp | TTGGTAACAGGCTTGGTGCTCTGCCAGCTTCCTGGGCAATGCAGGAGAATGGCATTGTCCTTCTGTTTGTaGATGGCAGCTTCTAAGAAT | + |
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Preference number: 3 (lower is better) Translates to: LVTGLVLCQLPGQCRRMALSFCL*MAASKN Trigger: ATTCTTAGAAGCTGCCATCAACAAACAGAAGGACAA...TGCCATTCTCCTGCATTGCCCAGGAAGCTGGCAGAGCACCAAGCCTGTTACCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR TCA 72 bp | AGTTGGGTTTGTATGCTTGATTTCAGCAGTCAGAACTaGGATGAGATGCGGGTGGGGTTGTCAGGACATCGA | + |
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Preference number: 3 (lower is better) Translates to: SWVCMLDFSSQN*DEMRVGLSGHR Trigger: TCGATGTCCTGACAACCCCACCCGCATCTCATCTCAGTTCTGACTGCTGAAATCAAGCATACAAACCCAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR-3UTR CAA 90 bp | GCACGTTGTACACTTGCTAGAAGCTCTCCTTTCAGTAGCGTTTGCGCTCCTTGTGGGCACACTAAACATTaGGTAAAATACCTACTCCGT | + |
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Preference number: 3 (lower is better) Translates to: ARCTLARSSPFSSVCAPCGHTKH*VKYLLR Trigger: ACGGAGTAGGTATTTTACCAAATGTTTAGTGTGCCC...ACAAGGAGCGCAAACGCTACTGAAAGGAGAGCTTCTAGCAAGTGTACAACGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR TCA 72 bp | TCATTCCCATGGTCTCTAAGGGTCACTTGTGGGATATaGACTTACCCACCACCACCACACATACAGGAGATT | + |
|
Preference number: 3 (lower is better) Translates to: SFPWSLRVTCGI*TYPPPPHIQEI Trigger: AATCTCCTGTATGTGTGGTGGTGGTGGGTAAGTTCATATCCCACAAGTGACCCTTAGAGACCATGGGAATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR TCA 72 bp | GCGGCACGATGCAGGCAATGTGCTTTAAAATGTAATTaGTGCCCATGGCCTTGGATAAGATGCTCATGTTGG | + |
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Preference number: 3 (lower is better) Translates to: AARCRQCALKCN*CPWPWIRCSCW Trigger: CCAACATGAGCATCTTATCCAAGGCCATGGGCATCAATTACATTTTAAAGCACATTGCCTGCATCGTGCCGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR CCA 72 bp | TTAAAGTCCTTGAAATCATTCGTGCAAATGCGCACTTaGTTTGTTTTCTTGGTAACAGGCTTGGTGCTCTGC | + |
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Preference number: 3 (lower is better) Translates to: LKSLKSFVQMRT*FVFLVTGLVLC Trigger: GCAGAGCACCAAGCCTGTTACCAAGAAAACAAACCAAGTGCGCATTTGCACGAATGATTTCAAGGACTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR CCA 90 bp | TTGGTAACAGGCTTGGTGCTCTGCCAGCTTCCTGGGCAATGCAGGAGAATGGCACAGGCTTCTTCGCCTTaGCCGCGCCTGCCCTTTTTG | + |
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Preference number: 4 (lower is better) Translates to: LVTGLVLCQLPGQCRRMAQASSP*PRLPFL Trigger: CAAAAAGGGCAGGCGCGGCCAAGGCGAAGAAGCCTG...TGCCATTCTCCTGCATTGCCCAGGAAGCTGGCAGAGCACCAAGCCTGTTACCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR GCA 90 bp | CCAGCTTCCTGGGCAATGCAGGAGAATGGCAGTCTGGATCAACTGAGATATGACCGCCTTGGCCGCGCCTaGCCTTTTTGCTTTGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: PASWAMQENGSLDQLRYDRLGRA*PFCFGL Trigger: AAGCCCAAAGCAAAAAGGGCAGGCGCGGCCAAGGCG...GTCATATCTCAGTTGATCCAGACTGCCATTCTCCTGCATTGCCCAGGAAGCTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR CCA 90 bp | TCTGCCAGCTTCCTGGGCAATGCAGGAGAATGGCAGTCTGGATCAACTGAGATATGCTCTTCTTGGCGGTaGCTGTCCCCGCAGCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SASFLGNAGEWQSGSTEICSSWR*LSPQPS Trigger: AGAAGGCTGCGGGGACAGCCACCGCCAAGAAGAGCA...TATCTCAGTTGATCCAGACTGCCATTCTCCTGCATTGCCCAGGAAGCTGGCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR GCA 90 bp | GTTGTACACTTGCTAGAAGCTCTCCTTTCAGTAGCGTTTGCGCTCCTTGTCCTTCTTGGGCTTCTTGGCTaGGCCCGCAGGCTTCTTCGC | + |
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Preference number: 4 (lower is better) Translates to: VVHLLEALLSVAFALLVLLGLLG*ARRLLR Trigger: GCGAAGAAGCCTGCGGGCGCAGCCAAGAAGCCCAAG...AAGGACAAGGAGCGCAAACGCTACTGAAAGGAGAGCTTCTAGCAAGTGTACAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR CCA 90 bp | AGAACTGAGATGAGATGCGGGTGGGGTTGTCAGGACATCGATCCTGCTCTTTACTCCTGCAGCTGCAGCTaGCTTCTTCGCTTTCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: RTEMRCGWGCQDIDPALYSCSCS*LLRFLW Trigger: CCAAAGAAAGCGAAGAAGCCAGCTGCAGCTGCAGGA...GTAAAGAGCAGGATCGATGTCCTGACAACCCCACCCGCATCTCATCTCAGTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR CCA 90 bp | CCAGCTTCCTGGGCAATGCAGGAGAATGGCAGTCTGGATCAACTGAGATATGACGGCTGCGGTTTTCTTTaGCTTAGCTGCCTTAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: PASWAMQENGSLDQLRYDGCGFL*LSCLRL Trigger: AAGCCTAAGGCAGCTAAGCCAAAGAAAACCGCAGCC...GTCATATCTCAGTTGATCCAGACTGCCATTCTCCTGCATTGCCCAGGAAGCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR CAA 72 bp | CAAATGCGCACTTGGTTTGTTTTCTTGGTAACAGGCTaGGTGCTCTGCCAGCTTCCTGGGCAATGCAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: QMRTWFVFLVTG*VLCQLPGQCRR Trigger: TCTCCTGCATTGCCCAGGAAGCTGGCAGAGCACCAAGCCTGTTACCAAGAAAACAAACCAAGTGCGCATTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR TCA 90 bp | CCTGCTCTTTACGCACTGAATCGCTCAATGCTTAAGATTCTATCTCTAAATCATTGCGGGCCTTCTTCTTaGCGGGTGTCTTCTCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: PALYALNRSMLKILSLNHCGPSS*RVSSRR Trigger: CCGCCGAGAAGACACCCGTCAAGAAGAAGGCCCGCA...ATGATTTAGAGATAGAATCTTAAGCATTGAGCGATTCAGTGCGTAAAGAGCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR GCA 90 bp | TCTGCCAGCTTCCTGGGCAATGCAGGAGAATGGCAGTCTGGATCAACTGAGATATTACTTTTTCTTGGCTaGGGTTTTCTTTGGCTTAGC | + |
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Preference number: 4 (lower is better) Translates to: SASFLGNAGEWQSGSTEILLFLG*GFLWLS Trigger: GCTAAGCCAAAGAAAACCGCAGCCAAGAAAAAGTAA...TATCTCAGTTGATCCAGACTGCCATTCTCCTGCATTGCCCAGGAAGCTGGCAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR CCA 90 bp | ATTCCCATGGTCTCTAAGGGTCACTTGTGGGATATGAACTTACCCACCACCACCCTTCTTCGCTTTCTTTaGAGTCTTCTTGGTGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: IPMVSKGHLWDMNLPTTTLLRFL*SLLGAL Trigger: AAGAGCACCAAGAAGACTCCAAAGAAAGCGAAGAAG...GGTGGTGGTGGGTAAGTTCATATCCCACAAGTGACCCTTAGAGACCATGGGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR GCA 90 bp | TCCTTGAAATCATTCGTGCAAATGCGCACTTGGTTTGTTTTCTTGGTAACAGGCCTTCTTAGCCTTAGTTaGCTTTGCCTTCTTCGGGCT | + |
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Preference number: 4 (lower is better) Translates to: SLKSFVQMRTWFVFLVTGLLSLS*LCLLRA Trigger: AGCCCGAAGAAGGCAAAGGCAACTAAGGCTAAGAAG...GCCTGTTACCAAGAAAACAAACCAAGTGCGCATTTGCACGAATGATTTCAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR CAA 72 bp | TTAGTGTTTCGTCACGAACAGGAACGTAAACGACACTaGAAGGTCTACTGTCTCATTGGCTGTCTTGTCACT | + |
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Preference number: 4 (lower is better) Translates to: LVFRHEQERKRH*KVYCLIGCLVT Trigger: AGTGACAAGACAGCCAATGAGACAGTAGACCTTCAAGTGTCGTTTACGTTCCTGTTCGTGACGAAACACTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR CAA 72 bp | TTTAAAGTCCTTGAAATCATTCGTGCAAATGCGCACTaGGTTTGTTTTCTTGGTAACAGGCTTGGTGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: FKVLEIIRANAH*VCFLGNRLGAL Trigger: CAGAGCACCAAGCCTGTTACCAAGAAAACAAACCAAGTGCGCATTTGCACGAATGATTTCAAGGACTTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| 3UTR CAA 72 bp | TCATTTGTTGAAAGAATGCCTGGCTCTTTAAAGTCCTaGAAATCATTCGTGCAAATGCGCACTTGGTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: SFVERMPGSLKS*KSFVQMRTWFV Trigger: AACAAACCAAGTGCGCATTTGCACGAATGATTTCAAGGACTTTAAAGAGCCAGGCATTCTTTCAACAAATGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS TCA 90 bp | AGGTTTTGCGCTTCGCGCCACCTGCGGCCTTGCGGGCCTTCTTCTTaGCGGGTGTCTTCTCGGCGGGGGCCGGTGCGGCGGGCGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: RFCASRHLRPCGPSS*RVSSRRGPVRRAQQ Trigger: CTGCTGCGCCCGCCGCACCGGCCCCCGCCGAGAAGACACCCGTCAAGAAGAAGGCCCGCAAGGCCGCAGGTGGCGCGAAGCGCAAAACCT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR CAA 90 bp | TCTGCCAGCTTCCTGGGCAATGCAGGAGAATGGCAGTCTGGATCAACTGAGATAGCGCCACCTGCGGCCTaGCGGGCCTTCTTCTTGACG | + |
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Preference number: 5 (lower is better) Translates to: SASFLGNAGEWQSGSTEIAPPAA*RAFFLT Trigger: CGTCAAGAAGAAGGCCCGCAAGGCCGCAGGTGGCGC...TATCTCAGTTGATCCAGACTGCCATTCTCCTGCATTGCCCAGGAAGCTGGCAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR CAA 90 bp | GCACGTTGTACACTTGCTAGAAGCTCTCCTTTCAGTAGCGTTTGCGCTCCTTGTGAGGCGGCCACAGCCTaGGTGATGAGTTCGGACACC | + |
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Preference number: 5 (lower is better) Translates to: ARCTLARSSPFSSVCAPCEAATA*VMSSDT Trigger: GGTGTCCGAACTCATCACCAAGGCTGTGGCCGCCTC...ACAAGGAGCGCAAACGCTACTGAAAGGAGAGCTTCTAGCAAGTGTACAACGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR CAA 90 bp | AGAACTGAGATGAGATGCGGGTGGGGTTGTCAGGACATCGATCCTGCTCTTTACGCCTTGGCAGGGCTCTaGGGCGCCTTCTTAGCCTTA | + |
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Preference number: 5 (lower is better) Translates to: RTEMRCGWGCQDIDPALYALAGL*GAFLAL Trigger: TAAGGCTAAGAAGGCGCCCAAGAGCCCTGCCAAGGC...GTAAAGAGCAGGATCGATGTCCTGACAACCCCACCCGCATCTCATCTCAGTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR CAA 90 bp | TCCTTGAAATCATTCGTGCAAATGCGCACTTGGTTTGTTTTCTTGGTAACAGGCGCCGCCAGCGCCTTCTaGAGCGCAGCCAGGGACACG | + |
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Preference number: 5 (lower is better) Translates to: SLKSFVQMRTWFVFLVTGAASAF*SAARDT Trigger: CGTGTCCCTGGCTGCGCTCAAGAAGGCGCTGGCGGC...GCCTGTTACCAAGAAAACAAACCAAGTGCGCATTTGCACGAATGATTTCAAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR CAA 90 bp | GTTGTACACTTGCTAGAAGCTCTCCTTTCAGTAGCGTTTGCGCTCCTTGTCCTTTTGCGGGCCTTCTTCTaGACGGGTGTCTTCTCGGCG | + |
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Preference number: 5 (lower is better) Translates to: VVHLLEALLSVAFALLVLLRAFF*TGVFSA Trigger: CGCCGAGAAGACACCCGTCAAGAAGAAGGCCCGCAA...AAGGACAAGGAGCGCAAACGCTACTGAAAGGAGAGCTTCTAGCAAGTGTACAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR CAA 90 bp | AGAACTGAGATGAGATGCGGGTGGGGTTGTCAGGACATCGATCCTGCTCTTTACTTCTTTGGAGTCTTCTaGGTGCTCTTCTTGGCGGTG | + |
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Preference number: 5 (lower is better) Translates to: RTEMRCGWGCQDIDPALYFFGVF*VLFLAV Trigger: CACCGCCAAGAAGAGCACCAAGAAGACTCCAAAGAA...GTAAAGAGCAGGATCGATGTCCTGACAACCCCACCCGCATCTCATCTCAGTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS-3UTR CAA 90 bp | CCTGCTCTTTACGCACTGAATCGCTCAATGCTTAAGATTCTATCTCTAAATCATGGGCTCTTAGCTTTTTaGGCTCCTGCAGCTGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: PALYALNRSMLKILSLNHGLLAF*APAAAA Trigger: AGCTGCAGCTGCAGGAGCCAAAAAAGCTAAGAGCCC...ATGATTTAGAGATAGAATCTTAAGCATTGAGCGATTCAGTGCGTAAAGAGCAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS TCA 72 bp | GCTTCGCGCCACCTGCGGCCTTGCGGGCCTTCTTCTTaGCGGGTGTCTTCTCGGCGGGGGCCGGTGCGGCGG | + |
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Preference number: 6 (lower is better) Translates to: ASRHLRPCGPSS*RVSSRRGPVRR Trigger: CCGCCGCACCGGCCCCCGCCGAGAAGACACCCGTCAAGAAGAAGGCCCGCAAGGCCGCAGGTGGCGCGAAGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS CAA 72 bp | CGCTTCGCGCCACCTGCGGCCTTGCGGGCCTTCTTCTaGACGGGTGTCTTCTCGGCGGGGGCCGGTGCGGCG | + |
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Preference number: 6 (lower is better) Translates to: RFAPPAALRAFF*TGVFSAGAGAA Trigger: CGCCGCACCGGCCCCCGCCGAGAAGACACCCGTCAAGAAGAAGGCCCGCAAGGCCGCAGGTGGCGCGAAGCG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS CAA 90 bp | GAGGTTTTGCGCTTCGCGCCACCTGCGGCCTTGCGGGCCTTCTTCTaGACGGGTGTCTTCTCGGCGGGGGCCGGTGCGGCGGGCGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: EVLRFAPPAALRAFF*TGVFSAGAGAAGAA Trigger: TGCTGCGCCCGCCGCACCGGCCCCCGCCGAGAAGACACCCGTCAAGAAGAAGGCCCGCAAGGCCGCAGGTGGCGCGAAGCGCAAAACCTC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS GCA 72 bp | CACCGGGGGTCCGGAGGTTTTGCGCTTCGCGCCACCTaGGGCCTTGCGGGCCTTCTTCTTGACGGGTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: HRGSGGFALRAT*GLAGLLLDGCL Trigger: AAGACACCCGTCAAGAAGAAGGCCCGCAAGGCCGCAGGTGGCGCGAAGCGCAAAACCTCCGGACCCCCGGTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS CAA 72 bp | GGTCCGGAGGTTTTGCGCTTCGCGCCACCTGCGGCCTaGCGGGCCTTCTTCTTGACGGGTGTCTTCTCGGCG | + |
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Preference number: 6 (lower is better) Translates to: GPEVLRFAPPAA*RAFFLTGVFSA Trigger: CGCCGAGAAGACACCCGTCAAGAAGAAGGCCCGCAAGGCCGCAGGTGGCGCGAAGCGCAAAACCTCCGGACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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| CDS CAA 72 bp | TTGGCTGCGGTTTTCTTTGGCTTAGCTGCCTTAGGCTaGGAGGTTTTTGGTTTGGCCGCTTTAGGCTTTACC | + |
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Preference number: 6 (lower is better) Translates to: LAAVFFGLAALG*EVFGLAALGFT Trigger: GGTAAAGCCTAAAGCGGCCAAACCAAAAACCTCCAAGCCTAAGGCAGCTAAGCCAAAGAAAACCGCAGCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062045.4 |
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