Pregenerated sensors for H1F2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036181Ensembl transcript IDs: ENSMUST00000040914.3
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGCCCATAGCACTTCCTGAGCAGCCCAGCACAAACAAGTCTAGGTaGGACACGCAACCCCACCCATCCCACCGGGGGAGCGAGTGCTGC | + |
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Preference number: 1 (lower is better) Translates to: QPIALPEQPSTNKSR*DTQPHPSHRGSECC Trigger: GCAGCACTCGCTCCCCCGGTGGGATGGGTGGGGTTGCGTGTCCCACCTAGACTTGTTTGTGCTGGGCTGCTCAGGAAGTGCTATGGGCTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR GCA 90 bp | CCACCGGGGGAGCGAGTGCTGCCGGGATCGAGTCCCTTGCAACCTTaGTTCATTAATCACACAAATGTCACAGCTCTTAAGTGGGAGTGG | + |
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Preference number: 1 (lower is better) Translates to: PPGERVLPGSSPLQP*FINHTNVTALKWEW Trigger: CCACTCCCACTTAAGAGCTGTGACATTTGTGTGATTAATGAAGCAAGGTTGCAAGGGACTCGATCCCGGCAGCACTCGCTCCCCCGGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR CCA 90 bp | TCCGGCAGCTACCCCATGTCTTTAATATTAAGGAAGGCAGTTCGTTaGCGCCAGCACCCCACCTTCTCCCAAACTTCCAGGCTAACCCCC | + |
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Preference number: 1 (lower is better) Translates to: SGSYPMSLILRKAVR*RQHPTFSQTSRLTP Trigger: GGGGGTTAGCCTGGAAGTTTGGGAGAAGGTGGGGTGCTGGCGCCAACGAACTGCCTTCCTTAATATTAAAGACATGGGGTAGCTGCCGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR GCA 90 bp | CACCCATCCCACCGGGGGAGCGAGTGCTGCCGGGATCGAGTCCCTTaGAACCTTGCTTCATTAATCACACAAATGTCACAGCTCTTAAGT | + |
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Preference number: 1 (lower is better) Translates to: HPSHRGSECCRDRVP*NLASLITQMSQLLS Trigger: ACTTAAGAGCTGTGACATTTGTGTGATTAATGAAGCAAGGTTGCAAGGGACTCGATCCCGGCAGCACTCGCTCCCCCGGTGGGATGGGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR TCA 90 bp | AGCATTACCAAGAAACCTCAGTATTCATACAAGGTCAATCTTCAGTaGCGACACACACGTATAAAGCAAGCGCTTCGGGAAGCTGAGGCA | + |
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Preference number: 1 (lower is better) Translates to: SITKKPQYSYKVNLQ*RHTRIKQALREAEA Trigger: TGCCTCAGCTTCCCGAAGCGCTTGCTTTATACGTGTGTGTCGTCACTGAAGATTGACCTTGTATGAATACTGAGGTTTCTTGGTAATGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR TCA 90 bp | TCTTCAGTGACGACACACACGTATAAAGCAAGCGCTTCGGGAAGCTaGGGCAAAACAAAGTTAATCTACAACTATGCTGATCAAAATAAG | + |
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Preference number: 1 (lower is better) Translates to: SSVTTHTYKASASGS*GKTKLIYNYADQNK Trigger: CTTATTTTGATCAGCATAGTTGTAGATTAACTTTGTTTTGCCTCAGCTTCCCGAAGCGCTTGCTTTATACGTGTGTGTCGTCACTGAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR CAA 90 bp | CCACCCATCCCACCGGGGGAGCGAGTGCTGCCGGGATCGAGTCCCTaGCAACCTTGCTTCATTAATCACACAAATGTCACAGCTCTTAAG | + |
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Preference number: 2 (lower is better) Translates to: PPIPPGERVLPGSSP*QPCFINHTNVTALK Trigger: CTTAAGAGCTGTGACATTTGTGTGATTAATGAAGCAAGGTTGCAAGGGACTCGATCCCGGCAGCACTCGCTCCCCCGGTGGGATGGGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR-3UTR GCA 90 bp | CGTTGGCGCCAGCACCCCACCTTCTCCCAAACTTCCAGGCTAACCCCCACAAGAACTTTCAAATCACCTTaGAGTCCAATACGAACTAGC | + |
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Preference number: 2 (lower is better) Translates to: RWRQHPTFSQTSRLTPTRTFKSP*SPIRTS Trigger: GCTAGTTCGTATTGGACTGCAAGGTGATTTGAAAGT...TCTTGTGGGGGTTAGCCTGGAAGTTTGGGAGAAGGTGGGGTGCTGGCGCCAACG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR-3UTR TCA 90 bp | TTAACTGTGCAGGCTAGTCGTTCCGGCAGCTACCCCATGTCTTTAATATTAAGGGTTGCTTTCTGCTGCTaGCAGCCGTGGGAGGGTGTT | + |
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Preference number: 2 (lower is better) Translates to: LTVQASRSGSYPMSLILRVAFCC*QPWEGV Trigger: AACACCCTCCCACGGCTGTCAGCAGCAGAAAGCAAC...CCTTAATATTAAAGACATGGGGTAGCTGCCGGAACGACTAGCCTGCACAGTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR-3UTR GCA 90 bp | CGTTCCGGCAGCTACCCCATGTCTTTAATATTAAGGAAGGCAGTTCGTTGGCGCCGGGATCGAGTCCCTTaGAACCTTGCTTCATTAATC | + |
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Preference number: 2 (lower is better) Translates to: RSGSYPMSLILRKAVRWRRDRVP*NLASLI Trigger: GATTAATGAAGCAAGGTTGCAAGGGACTCGATCCCG...GCGCCAACGAACTGCCTTCCTTAATATTAAAGACATGGGGTAGCTGCCGGAACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR-3UTR GCA 90 bp | TTAACTGTGCAGGCTAGTCGTTCCGGCAGCTACCCCATGTCTTTAATATTAAGGAGTCCCTTGCAACCTTaGTTCATTAATCACACAAAT | + |
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Preference number: 2 (lower is better) Translates to: LTVQASRSGSYPMSLILRSPLQP*FINHTN Trigger: ATTTGTGTGATTAATGAAGCAAGGTTGCAAGGGACT...CCTTAATATTAAAGACATGGGGTAGCTGCCGGAACGACTAGCCTGCACAGTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR CCA 72 bp | GCACTTCCTGAGCAGCCCAGCACAAACAAGTCTAGGTaGGACACGCAACCCCACCCATCCCACCGGGGGAGC | + |
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Preference number: 3 (lower is better) Translates to: ALPEQPSTNKSR*DTQPHPSHRGS Trigger: GCTCCCCCGGTGGGATGGGTGGGGTTGCGTGTCCCACCTAGACTTGTTTGTGCTGGGCTGCTCAGGAAGTGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR TCA 72 bp | CAATACGAACTAGCGCCGAGGGTTGCTTTCTGCTGCTaGCAGCCGTGGGAGGGTGTTCCAGCCCATAGCACT | + |
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Preference number: 3 (lower is better) Translates to: QYELAPRVAFCC*QPWEGVPAHST Trigger: AGTGCTATGGGCTGGAACACCCTCCCACGGCTGTCAGCAGCAGAAAGCAACCCTCGGCGCTAGTTCGTATTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR GCA 72 bp | TCACCTTGCAGTCCAATACGAACTAGCGCCGAGGGTTaGTTTCTGCTGCTGACAGCCGTGGGAGGGTGTTCC | + |
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Preference number: 3 (lower is better) Translates to: SPCSPIRTSAEG*FLLLTAVGGCS Trigger: GGAACACCCTCCCACGGCTGTCAGCAGCAGAAAGCAACCCTCGGCGCTAGTTCGTATTGGACTGCAAGGTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR CCA 72 bp | TACCCCATGTCTTTAATATTAAGGAAGGCAGTTCGTTaGCGCCAGCACCCCACCTTCTCCCAAACTTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: YPMSLILRKAVR*RQHPTFSQTSR Trigger: CCTGGAAGTTTGGGAGAAGGTGGGGTGCTGGCGCCAACGAACTGCCTTCCTTAATATTAAAGACATGGGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR GCA 72 bp | GAGCGAGTGCTGCCGGGATCGAGTCCCTTGCAACCTTaGTTCATTAATCACACAAATGTCACAGCTCTTAAG | + |
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Preference number: 3 (lower is better) Translates to: ERVLPGSSPLQP*FINHTNVTALK Trigger: CTTAAGAGCTGTGACATTTGTGTGATTAATGAAGCAAGGTTGCAAGGGACTCGATCCCGGCAGCACTCGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR CCA 72 bp | GGTTGTGACGCAGTTCAACCCACAACTCCATCGCTGTaGCAAACAAACCGAAAGTACGAGAAGCAATCGTCT | + |
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Preference number: 3 (lower is better) Translates to: GCDAVQPTTPSL*QTNRKYEKQSS Trigger: AGACGATTGCTTCTCGTACTTTCGGTTTGTTTGCCACAGCGATGGAGTTGTGGGTTGAACTGCGTCACAACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR TCA 72 bp | ACGACACACACGTATAAAGCAAGCGCTTCGGGAAGCTaGGGCAAAACAAAGTTAATCTACAACTATGCTGAT | + |
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Preference number: 3 (lower is better) Translates to: TTHTYKASASGS*GKTKLIYNYAD Trigger: ATCAGCATAGTTGTAGATTAACTTTGTTTTGCCTCAGCTTCCCGAAGCGCTTGCTTTATACGTGTGTGTCGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR TCA 72 bp | AAGAAACCTCAGTATTCATACAAGGTCAATCTTCAGTaGCGACACACACGTATAAAGCAAGCGCTTCGGGAA | + |
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Preference number: 3 (lower is better) Translates to: KKPQYSYKVNLQ*RHTRIKQALRE Trigger: TTCCCGAAGCGCTTGCTTTATACGTGTGTGTCGTCACTGAAGATTGACCTTGTATGAATACTGAGGTTTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR GCA 90 bp | CGAAGAACTAGAGTCCTGGGCCGGAGTGAGCCAACCCACAAGCAGGGCGGAACTCCAGGGACACGCCGCTaGGCTCCTTGGAGGCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: RRTRVLGRSEPTHKQGGTPGTRR*APWRRP Trigger: TGGCCGCCTCCAAGGAGCGCAGCGGCGTGTCCCTGG...AGTTCCGCCCTGCTTGTGGGTTGGCTCACTCCGGCCCAGGACTCTAGTTCTTCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR TCA 90 bp | GACAGCCGTGGGAGGGTGTTCCAGCCCATAGCACTTCCTGAGCAGCCCAGCACACCTTCTTGGGCTTGGTaGCCTTCGCCTTCTTTGGGC | + |
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Preference number: 4 (lower is better) Translates to: DSRGRVFQPIALPEQPSTPSWAW*PSPSLG Trigger: GCCCAAAGAAGGCGAAGGTCACCAAGCCCAAGAAGG...TGTGCTGGGCTGCTCAGGAAGTGCTATGGGCTGGAACACCCTCCCACGGCTGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR CCA 90 bp | CGAAGAACTAGAGTCCTGGGCCGGAGTGAGCCAACCCACAAGCAGGGCGGAACTTGGCGGCCTTCTTTTTaGCAGGCGCCTTCTCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: RRTRVLGRSEPTHKQGGTWRPSF*QAPSPQ Trigger: CTGCGGAGAAGGCGCCTGCCAAAAAGAAGGCCGCCA...AGTTCCGCCCTGCTTGTGGGTTGGCTCACTCCGGCCCAGGACTCTAGTTCTTCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR CCA 90 bp | CGTTGGCGCCAGCACCCCACCTTCTCCCAAACTTCCAGGCTAACCCCCACAAGACAACCTTCTTGGCCTTaGCAACCTTGGGCTTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: RWRQHPTFSQTSRLTPTRQPSWP*QPWAWQ Trigger: CTGCCAAGCCCAAGGTTGCCAAGGCCAAGAAGGTTG...TCTTGTGGGGGTTAGCCTGGAAGTTTGGGAGAAGGTGGGGTGCTGGCGCCAACG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR CAA 72 bp | CCACCGGGGGAGCGAGTGCTGCCGGGATCGAGTCCCTaGCAACCTTGCTTCATTAATCACACAAATGTCACA | + |
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Preference number: 4 (lower is better) Translates to: PPGERVLPGSSP*QPCFINHTNVT Trigger: TGTGACATTTGTGTGATTAATGAAGCAAGGTTGCAAGGGACTCGATCCCGGCAGCACTCGCTCCCCCGGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR CCA 90 bp | CGTTCCGGCAGCTACCCCATGTCTTTAATATTAAGGAAGGCAGTTCGTTGGCGCTGGCCTTGGCAACCTTaGGCTTGGCAGCCTTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: RSGSYPMSLILRKAVRWRWPWQP*AWQPLA Trigger: AGCCAAAGGCTGCCAAGCCCAAGGTTGCCAAGGCCA...GCGCCAACGAACTGCCTTCCTTAATATTAAAGACATGGGGTAGCTGCCGGAACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR GCA 90 bp | TTAACTGTGCAGGCTAGTCGTTCCGGCAGCTACCCCATGTCTTTAATATTAAGGCGCCTTGGCCGCGCCTaGCTTCTTAGCCTGGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: LTVQASRSGSYPMSLILRRLGRA*LLSLGF Trigger: AAACCCCAGGCTAAGAAGGCAGGCGCGGCCAAGGCG...CCTTAATATTAAAGACATGGGGTAGCTGCCGGAACGACTAGCCTGCACAGTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR CCA 90 bp | CGTTCCGGCAGCTACCCCATGTCTTTAATATTAAGGAAGGCAGTTCGTTGGCGCGACCTTCGCCTTCTTTaGGCTCTTGGCCACTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: RSGSYPMSLILRKAVRWRDLRLL*ALGHFL Trigger: AAGAAAGTGGCCAAGAGCCCAAAGAAGGCGAAGGTC...GCGCCAACGAACTGCCTTCCTTAATATTAAAGACATGGGGTAGCTGCCGGAACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| 3UTR CAA 72 bp | CTACCCCATGTCTTTAATATTAAGGAAGGCAGTTCGTaGGCGCCAGCACCCCACCTTCTCCCAAACTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: LPHVFNIKEGSS*APAPHLLPNFQ Trigger: CTGGAAGTTTGGGAGAAGGTGGGGTGCTGGCGCCAACGAACTGCCTTCCTTAATATTAAAGACATGGGGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR CCA 90 bp | CTTGCTTCATTAATCACACAAATGTCACAGCTCTTAAGTGGGAGTGGTGGCTCTTCTTGGCCGCCTTTTTaGGTGTGGCAGCACCAGTCG | + |
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Preference number: 4 (lower is better) Translates to: LASLITQMSQLLSGSGGSSWPPF*VWQHQS Trigger: CGACTGGTGCTGCCACACCCAAAAAGGCGGCCAAGA...AGAGCCACCACTCCCACTTAAGAGCTGTGACATTTGTGTGATTAATGAAGCAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR CCA 90 bp | TTAACTGTGCAGGCTAGTCGTTCCGGCAGCTACCCCATGTCTTTAATATTAAGGTGGCAACCTTGGGCTTaGCAGCCTTTGGCTTTACGG | + |
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Preference number: 4 (lower is better) Translates to: LTVQASRSGSYPMSLILRWQPWA*QPLALR Trigger: CCGTAAAGCCAAAGGCTGCCAAGCCCAAGGTTGCCA...CCTTAATATTAAAGACATGGGGTAGCTGCCGGAACGACTAGCCTGCACAGTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR GCA 90 bp | TTTAATATTAAGGAAGGCAGTTCGTTGGCGCCAGCACCCCACCTTCTCCCAAACCTACTTTTTCTTGGCTaGAACCTTCTTGGCCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: FNIKEGSSLAPAPHLLPNLLFLG*NLLGLG Trigger: GCCAAGGCCAAGAAGGTTGCAGCCAAGAAAAAGTAG...GTTTGGGAGAAGGTGGGGTGCTGGCGCCAACGAACTGCCTTCCTTAATATTAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR CCA 90 bp | CTTGCTTCATTAATCACACAAATGTCACAGCTCTTAAGTGGGAGTGGTGGCTCTTGGCTGCAACCTTCTTaGCCTTGGCAACCTTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: LASLITQMSQLLSGSGGSWLQPS*PWQPWA Trigger: AGCCCAAGGTTGCCAAGGCCAAGAAGGTTGCAGCCA...AGAGCCACCACTCCCACTTAAGAGCTGTGACATTTGTGTGATTAATGAAGCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR CAA 90 bp | GACAGCCGTGGGAGGGTGTTCCAGCCCATAGCACTTCCTGAGCAGCCCAGCACACTCTTGGCCACTTTCTaGGTCACAGCCGCCGCCGCG | + |
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Preference number: 5 (lower is better) Translates to: DSRGRVFQPIALPEQPSTLLATF*VTAAAA Trigger: CGCGGCGGCGGCTGTGACCAAGAAAGTGGCCAAGAG...TGTGCTGGGCTGCTCAGGAAGTGCTATGGGCTGGAACACCCTCCCACGGCTGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR CAA 90 bp | TTTAATATTAAGGAAGGCAGTTCGTTGGCGCCAGCACCCCACCTTCTCCCAAACTTGGCCTTGGCAACCTaGGGCTTGGCAGCCTTTGGC | + |
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Preference number: 5 (lower is better) Translates to: FNIKEGSSLAPAPHLLPNLALAT*GLAAFG Trigger: GCCAAAGGCTGCCAAGCCCAAGGTTGCCAAGGCCAA...GTTTGGGAGAAGGTGGGGTGCTGGCGCCAACGAACTGCCTTCCTTAATATTAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR CAA 90 bp | CGTTCCGGCAGCTACCCCATGTCTTTAATATTAAGGAAGGCAGTTCGTTGGCGCTTGGCAACCTTGGGCTaGGCAGCCTTTGGCTTTACG | + |
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Preference number: 5 (lower is better) Translates to: RSGSYPMSLILRKAVRWRLATLG*AAFGFT Trigger: CGTAAAGCCAAAGGCTGCCAAGCCCAAGGTTGCCAA...GCGCCAACGAACTGCCTTCCTTAATATTAAAGACATGGGGTAGCTGCCGGAACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS-3UTR CAA 90 bp | CTTGCTTCATTAATCACACAAATGTCACAGCTCTTAAGTGGGAGTGGTGGCTCTTTGGCGGCCTTCTTTTaGGCAGGCGCCTTCTCCGCA | + |
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Preference number: 5 (lower is better) Translates to: LASLITQMSQLLSGSGGSLAAFF*AGAFSA Trigger: TGCGGAGAAGGCGCCTGCCAAAAAGAAGGCCGCCAA...AGAGCCACCACTCCCACTTAAGAGCTGTGACATTTGTGTGATTAATGAAGCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS CCA 72 bp | GTCCGGACGCCTTACGGCGCACCCCGGCGGGCTTCTTaGCGGCCTTCTTTTTGGCAGGCGCCTTCTCCGCAG | + |
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Preference number: 6 (lower is better) Translates to: VRTPYGAPRRAS*RPSFWQAPSPQ Trigger: CTGCGGAGAAGGCGCCTGCCAAAAAGAAGGCCGCCAAGAAGCCCGCCGGGGTGCGCCGTAAGGCGTCCGGAC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS CAA 72 bp | GGTCCGGACGCCTTACGGCGCACCCCGGCGGGCTTCTaGGCGGCCTTCTTTTTGGCAGGCGCCTTCTCCGCA | + |
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Preference number: 6 (lower is better) Translates to: GPDALRRTPAGF*AAFFLAGAFSA Trigger: TGCGGAGAAGGCGCCTGCCAAAAAGAAGGCCGCCAAGAAGCCCGCCGGGGTGCGCCGTAAGGCGTCCGGACC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS CAA 90 bp | ACCTTGGGCTTGGCAGCCTTTGGCTTTACGGCTTTAGACGCGCTCTaGACCTTCTTGGGCTTGGTGACCTTCGCCTTCTTTGGGCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: TLGLAAFGFTALDAL*TFLGLVTFAFFGLL Trigger: CAAGAGCCCAAAGAAGGCGAAGGTCACCAAGCCCAAGAAGGTCAAGAGCGCGTCTAAAGCCGTAAAGCCAAAGGCTGCCAAGCCCAAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS CAA 72 bp | TTTGGCTTTACGGCTTTAGACGCGCTCTTGACCTTCTaGGGCTTGGTGACCTTCGCCTTCTTTGGGCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: FGFTALDALLTF*GLVTFAFFGLL Trigger: CAAGAGCCCAAAGAAGGCGAAGGTCACCAAGCCCAAGAAGGTCAAGAGCGCGTCTAAAGCCGTAAAGCCAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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| CDS CAA 72 bp | TTGGCAGCCTTTGGCTTTACGGCTTTAGACGCGCTCTaGACCTTCTTGGGCTTGGTGACCTTCGCCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: LAAFGFTALDAL*TFLGLVTFAFF Trigger: AAAGAAGGCGAAGGTCACCAAGCCCAAGAAGGTCAAGAGCGCGTCTAAAGCCGTAAAGCCAAAGGCTGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040914.3 |
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