RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for H1F10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044927

Ensembl transcript IDs: ENSMUST00000056403.7

Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGGTGGCCATCAGCGGGCACAGTAGGCAGGCGCCACCAGGCCATTaGCGCCGCCGGGCCGGTAACCATGGCGACGGCCGTTGCCAAGGG +
Preference number: 1 (lower is better)
Translates to: LVAISGHSRQAPPGH*RRRAGNHGDGRCQG
Trigger: CCCTTGGCAACGGCCGTCGCCATGGTTACCGGCCCGGCGGCGCCAATGGCCTGGTGGCGCCTGCCTACTGTGCCCGCTGATGGCCACCAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
3UTR TCA 90 bp TGGCGCCGCCGGGCCGGTAACCATGGCGACGGCCGTTGCCAAGGGTaGGAGCCAATGGGGGCGTCGCCAGGGCCGTTTCAAAAACCTAAA +
Preference number: 1 (lower is better)
Translates to: WRRRAGNHGDGRCQG*EPMGASPGPFQKPK
Trigger: TTTAGGTTTTTGAAACGGCCCTGGCGACGCCCCCATTGGCTCTCACCCTTGGCAACGGCCGTCGCCATGGTTACCGGCCCGGCGGCGCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
3UTR CCA 90 bp GGGCCGGTAACCATGGCGACGGCCGTTGCCAAGGGTGAGAGCCAATaGGGGCGTCGCCAGGGCCGTTTCAAAAACCTAAAGCAAACAGAA +
Preference number: 1 (lower is better)
Translates to: GPVTMATAVAKGESQ*GRRQGRFKNLKQTE
Trigger: TTCTGTTTGCTTTAGGTTTTTGAAACGGCCCTGGCGACGCCCCCATTGGCTCTCACCCTTGGCAACGGCCGTCGCCATGGTTACCGGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
3UTR-3UTR CCA 90 bp AGGCGCCACCAGGCCATTGGCGCCGCCGGGCCGGTAACCATGGCGACGGCCGTTAGGGATAGAGACAGATaGAAAACTCGACGATGTCGC +
Preference number: 2 (lower is better)
Translates to: RRHQAIGAAGPVTMATAVRDRDR*KTRRCR
Trigger: GCGACATCGTCGAGTTTTCCATCTGTCTCTATCCCT...AACGGCCGTCGCCATGGTTACCGGCCCGGCGGCGCCAATGGCCTGGTGGCGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
3UTR CCA 72 bp AGCGGGCGGAGCAAGGCGCCACACAACCCAAGCGCCTaGTGGCCATCAGCGGGCACAGTAGGCAGGCGCCAC +
Preference number: 3 (lower is better)
Translates to: SGRSKAPHNPSA*WPSAGTVGRRH
Trigger: GTGGCGCCTGCCTACTGTGCCCGCTGATGGCCACCAGGCGCTTGGGTTGTGTGGCGCCTTGCTCCGCCCGCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
3UTR TCA 72 bp CGGGCCGGTAACCATGGCGACGGCCGTTGCCAAGGGTaGGAGCCAATGGGGGCGTCGCCAGGGCCGTTTCAA +
Preference number: 3 (lower is better)
Translates to: RAGNHGDGRCQG*EPMGASPGPFQ
Trigger: TTGAAACGGCCCTGGCGACGCCCCCATTGGCTCTCACCCTTGGCAACGGCCGTCGCCATGGTTACCGGCCCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
3UTR CCA 72 bp ACCATGGCGACGGCCGTTGCCAAGGGTGAGAGCCAATaGGGGCGTCGCCAGGGCCGTTTCAAAAACCTAAAG +
Preference number: 3 (lower is better)
Translates to: TMATAVAKGESQ*GRRQGRFKNLK
Trigger: CTTTAGGTTTTTGAAACGGCCCTGGCGACGCCCCCATTGGCTCTCACCCTTGGCAACGGCCGTCGCCATGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CCA 90 bp GCGCCACCAGGCCATTGGCGCCGCCGGGCCGGTAACCATGGCGACGGCCGTTGCCCCGTCGGCGCTCGTTaGCGGCAGGGCCTCCTCAAG +
Preference number: 4 (lower is better)
Translates to: APPGHWRRRAGNHGDGRCPVGAR*RQGLLK
Trigger: CTTGAGGAGGCCCTGCCGCCAACGAGCGCCGACGGG...GCAACGGCCGTCGCCATGGTTACCGGCCCGGCGGCGCCAATGGCCTGGTGGCGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CCA 90 bp CAGGCCATTGGCGCCGCCGGGCCGGTAACCATGGCGACGGCCGTTGCCAAGGGTGGCCCTTGGGCACCTTaGGCACGCTGGGTTTGGCCG +
Preference number: 4 (lower is better)
Translates to: QAIGAAGPVTMATAVAKGGPWAP*ARWVWP
Trigger: CGGCCAAACCCAGCGTGCCCAAGGTGCCCAAGGGCC...ACCCTTGGCAACGGCCGTCGCCATGGTTACCGGCCCGGCGGCGCCAATGGCCTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR GCA 90 bp GGGCGGAGCAAGGCGCCACACAACCCAAGCGCCTGGTGGCCATCAGCGGGCACACGCGCTCCCCCAGCTTaGGGATGGTCTCCACCACCA +
Preference number: 4 (lower is better)
Translates to: GRSKAPHNPSAWWPSAGTRAPPA*GWSPPP
Trigger: TGGTGGTGGAGACCATCCGCAAGCTGGGGGAGCGCG...TGTGCCCGCTGATGGCCACCAGGCGCTTGGGTTGTGTGGCGCCTTGCTCCGCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR GCA 90 bp CAGGCCATTGGCGCCGCCGGGCCGGTAACCATGGCGACGGCCGTTGCCAAGGGTATCCGTTGGCGCCGGTaGCCTTCACCTGCAGTAGCG +
Preference number: 4 (lower is better)
Translates to: QAIGAAGPVTMATAVAKGIRWRR*PSPAVA
Trigger: CGCTACTGCAGGTGAAGGGCACCGGCGCCAACGGAT...ACCCTTGGCAACGGCCGTCGCCATGGTTACCGGCCCGGCGGCGCCAATGGCCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CCA 90 bp GCGACGGCCGTTGCCAAGGGTGAGAGCCAATGGGGGCGTCGCCAGGGCCGTTTCGGTTCTTCCTTCTCTTaGGCTGCGTGGGCGCCGCAG +
Preference number: 4 (lower is better)
Translates to: ATAVAKGESQWGRRQGRFGSSFS*AAWAPQ
Trigger: CTGCGGCGCCCACGCAGCCCAAGAGAAGGAAGAACC...GAAACGGCCCTGGCGACGCCCCCATTGGCTCTCACCCTTGGCAACGGCCGTCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CCA 90 bp CAGGCCATTGGCGCCGCCGGGCCGGTAACCATGGCGACGGCCGTTGCCAAGGGTTCACTTTCTTCGCGCTaGCAGCAGCCGCCGCCTTCT +
Preference number: 4 (lower is better)
Translates to: QAIGAAGPVTMATAVAKGSLSSR*QQPPPS
Trigger: AGAAGGCGGCGGCTGCTGCCAGCGCGAAGAAAGTGA...ACCCTTGGCAACGGCCGTCGCCATGGTTACCGGCCCGGCGGCGCCAATGGCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR GCA 90 bp AGGGATCAGGGACCTGGGCCAGGCGGAACCCTACGGAACCGGTACACCGAGGGTTTCCTTCTCTTGGGCTaGGTGGGCGCCGCAGAGCCG +
Preference number: 4 (lower is better)
Translates to: RDQGPGPGGTLRNRYTEGFLLLG*VGAAEP
Trigger: CGGCTCTGCGGCGCCCACGCAGCCCAAGAGAAGGAA...ACCCTCGGTGTACCGGTTCCGTAGGGTTCCGCCTGGCCCAGGTCCCTGATCCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR GCA 90 bp ATTGGCGCCGCCGGGCCGGTAACCATGGCGACGGCCGTTGCCAAGGGTGAGAGCCTGCTGGTCGAACCATaGCACCTTCCTGGCCTCAGC +
Preference number: 4 (lower is better)
Translates to: IGAAGPVTMATAVAKGESLLVEP*HLPGLS
Trigger: GCTGAGGCCAGGAAGGTGGCATGGTTCGACCAGCAG...GCTCTCACCCTTGGCAACGGCCGTCGCCATGGTTACCGGCCCGGCGGCGCCAAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR GCA 90 bp AGCGGGCGGAGCAAGGCGCCACACAACCCAAGCGCCTGGTGGCCATCAGCGGGCCCAGCTGGCTGTACTTaGCTGGCTGGTTCTTCTTGC +
Preference number: 4 (lower is better)
Translates to: SGRSKAPHNPSAWWPSAGPAGCT*LAGSSC
Trigger: GCAAGAAGAACCAGCCAGGCAAGTACAGCCAGCTGG...GCCCGCTGATGGCCACCAGGCGCTTGGGTTGTGTGGCGCCTTGCTCCGCCCGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR GCA 90 bp ATTGGCGCCGCCGGGCCGGTAACCATGGCGACGGCCGTTGCCAAGGGTGAGAGCCCGGTGCCCTTCACCTaGAGTAGCGTATCGTTCTGC +
Preference number: 4 (lower is better)
Translates to: IGAAGPVTMATAVAKGESPVPFT*SSVSFC
Trigger: GCAGAACGATACGCTACTGCAGGTGAAGGGCACCGG...GCTCTCACCCTTGGCAACGGCCGTCGCCATGGTTACCGGCCCGGCGGCGCCAAT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR TCA 90 bp CGGAGCAAGGCGCCACACAACCCAAGCGCCTGGTGGCCATCAGCGGGCACAGTATCTTGCGGTTCAGCTTaGAGGATCCGTTGGCGCCGG +
Preference number: 4 (lower is better)
Translates to: RSKAPHNPSAWWPSAGTVSCGSA*RIRWRR
Trigger: CCGGCGCCAACGGATCCTTCAAGCTGAACCGCAAGA...TACTGTGCCCGCTGATGGCCACCAGGCGCTTGGGTTGTGTGGCGCCTTGCTCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CCA 90 bp AGGGGACAGGGATCAGGGACCTGGGCCAGGCGGAACCCTACGGAACCGGTACACGTCTCCACCACCAGCTaGCTGTACTTGCCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: RGQGSGTWARRNPTEPVHVSTTS*LYLPGW
Trigger: CCAGCCAGGCAAGTACAGCCAGCTGGTGGTGGAGAC...GTGTACCGGTTCCGTAGGGTTCCGCCTGGCCCAGGTCCCTGATCCCTGTCCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CCA 90 bp GCGCCACACAACCCAAGCGCCTGGTGGCCATCAGCGGGCACAGTAGGCAGGCGCTGGGCACGCTGGGTTTaGCCGCCTTCTTCACTTTCT +
Preference number: 4 (lower is better)
Translates to: APHNPSAWWPSAGTVGRRWARWV*PPSSLS
Trigger: AGAAAGTGAAGAAGGCGGCCAAACCCAGCGTGCCCA...GCGCCTGCCTACTGTGCCCGCTGATGGCCACCAGGCGCTTGGGTTGTGTGGCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CCA 90 bp AGGGATCAGGGACCTGGGCCAGGCGGAACCCTACGGAACCGGTACACCGAGGGTGCACCTTGGGCACGCTaGGTTTGGCCGCCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: RDQGPGPGGTLRNRYTEGAPWAR*VWPPSS
Trigger: TGAAGAAGGCGGCCAAACCCAGCGTGCCCAAGGTGC...ACCCTCGGTGTACCGGTTCCGTAGGGTTCCGCCTGGCCCAGGTCCCTGATCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 90 bp GCGTTCTGTCCGCCGCCGCCGTGCGCGCCTTGGGCGCGGGGCTGCTaGCCGCCGAAGCTCCGCGCCGCTCCGCGCCGCCCTCCAGCTTCT +
Preference number: 5 (lower is better)
Translates to: AFCPPPPCAPWARGC*PPKLRAAPRRPPAS
Trigger: AGAAGCTGGAGGGCGGCGCGGAGCGGCGCGGAGCTTCGGCGGCCAGCAGCCCCGCGCCCAAGGCGCGCACGGCGGCGGCGGACAGAACGC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 90 bp CCGCCGCCTTCTTGCTCTTGTGCGCGCGCCGCTCCGGCTGCGGCCTaGCGGGCGTTCTGTCCGCCGCCGCCGTGCGCGCCTTGGGCGCGG +
Preference number: 5 (lower is better)
Translates to: PPPSCSCARAAPAAA*RAFCPPPPCAPWAR
Trigger: CCGCGCCCAAGGCGCGCACGGCGGCGGCGGACAGAACGCCCGCCAGGCCGCAGCCGGAGCGGCGCGCGCACAAGAGCAAGAAGGCGGCGG
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS GCA 90 bp TCTTGGGCTGCGTGGGCGCCGCAGAGCCGCCGGCCTTGGCCGTCTTaGGGGCCGTCCCGTCGGCGCTCGTTGGCGGCAGGGCCTCCTCAA +
Preference number: 5 (lower is better)
Translates to: SWAAWAPQSRRPWPS*GPSRRRSLAAGPPQ
Trigger: TTGAGGAGGCCCTGCCGCCAACGAGCGCCGACGGGACGGCCCGCAAGACGGCCAAGGCCGGCGGCTCTGCGGCGCCCACGCAGCCCAAGA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CAA 90 bp AGGCGCCACCAGGCCATTGGCGCCGCCGGGCCGGTAACCATGGCGACGGCCGTTTCCCGTCGGCGCTCGTaGGCGGCAGGGCCTCCTCAA +
Preference number: 5 (lower is better)
Translates to: RRHQAIGAAGPVTMATAVSRRRS*AAGPPQ
Trigger: TTGAGGAGGCCCTGCCGCCAACGAGCGCCGACGGGA...AACGGCCGTCGCCATGGTTACCGGCCCGGCGGCGCCAATGGCCTGGTGGCGCCT
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CAA 90 bp AGCGGGCGGAGCAAGGCGCCACACAACCCAAGCGCCTGGTGGCCATCAGCGGGCCCGCGCTCCCCCAGCTaGCGGATGGTCTCCACCACC +
Preference number: 5 (lower is better)
Translates to: SGRSKAPHNPSAWWPSAGPRSPS*RMVSTT
Trigger: GGTGGTGGAGACCATCCGCAAGCTGGGGGAGCGCGG...GCCCGCTGATGGCCACCAGGCGCTTGGGTTGTGTGGCGCCTTGCTCCGCCCGCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CAA 90 bp GCGACGGCCGTTGCCAAGGGTGAGAGCCAATGGGGGCGTCGCCAGGGCCGTTTCGCAGCCGCCGCCTTCTaGCTCTTGTGCGCGCGCCGC +
Preference number: 5 (lower is better)
Translates to: ATAVAKGESQWGRRQGRFAAAAF*LLCARR
Trigger: GCGGCGCGCGCACAAGAGCAAGAAGGCGGCGGCTGC...GAAACGGCCCTGGCGACGCCCCCATTGGCTCTCACCCTTGGCAACGGCCGTCGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CAA 90 bp GCGCCACACAACCCAAGCGCCTGGTGGCCATCAGCGGGCACAGTAGGCAGGCGCCGGCCCTTGGGCACCTaGGGCACGCTGGGTTTGGCC +
Preference number: 5 (lower is better)
Translates to: APHNPSAWWPSAGTVGRRRPLGT*GTLGLA
Trigger: GGCCAAACCCAGCGTGCCCAAGGTGCCCAAGGGCCG...GCGCCTGCCTACTGTGCCCGCTGATGGCCACCAGGCGCTTGGGTTGTGTGGCGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 90 bp TGCCTGGCTGGTTCTTCTTGCGGTTCTTCCTTCTCTTGGGCTGCGTaGGCGCCGCAGAGCCGCCGGCCTTGGCCGTCTTGCGGGCCGTCC +
Preference number: 5 (lower is better)
Translates to: CLAGSSCGSSFSWAA*APQSRRPWPSCGPS
Trigger: GGACGGCCCGCAAGACGGCCAAGGCCGGCGGCTCTGCGGCGCCCACGCAGCCCAAGAGAAGGAAGAACCGCAAGAAGAACCAGCCAGGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CAA 90 bp GCGCCACACAACCCAAGCGCCTGGTGGCCATCAGCGGGCACAGTAGGCAGGCGCCGGTTCTTCCTTCTCTaGGGCTGCGTGGGCGCCGCA +
Preference number: 5 (lower is better)
Translates to: APHNPSAWWPSAGTVGRRRFFLL*GCVGAA
Trigger: TGCGGCGCCCACGCAGCCCAAGAGAAGGAAGAACCG...GCGCCTGCCTACTGTGCCCGCTGATGGCCACCAGGCGCTTGGGTTGTGTGGCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CAA 90 bp GCGCCACCAGGCCATTGGCGCCGCCGGGCCGGTAACCATGGCGACGGCCGTTGCTTGGGCACGCTGGGTTaGGCCGCCTTCTTCACTTTC +
Preference number: 5 (lower is better)
Translates to: APPGHWRRRAGNHGDGRCLGTLG*AAFFTF
Trigger: GAAAGTGAAGAAGGCGGCCAAACCCAGCGTGCCCAA...GCAACGGCCGTCGCCATGGTTACCGGCCCGGCGGCGCCAATGGCCTGGTGGCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS GCA 90 bp CAGCGTAGATGCGCGCCAGAGACGAGCCGCCGCGCTCCCCCAGCTTaGGGATGGTCTCCACCACCAGCTGGCTGTACTTGCCTGGCTGGT +
Preference number: 5 (lower is better)
Translates to: QRRCAPETSRRAPPA*GWSPPPAGCTCLAG
Trigger: ACCAGCCAGGCAAGTACAGCCAGCTGGTGGTGGAGACCATCCGCAAGCTGGGGGAGCGCGGCGGCTCGTCTCTGGCGCGCATCTACGCTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS GCA 90 bp CGTTCTGCTGGTCGAACCATGCCACCTTCCTGGCCTCAGCGTAGATaGGCGCCAGAGACGAGCCGCCGCGCTCCCCCAGCTTGCGGATGG +
Preference number: 5 (lower is better)
Translates to: RSAGRTMPPSWPQRR*APETSRRAPPACGW
Trigger: CCATCCGCAAGCTGGGGGAGCGCGGCGGCTCGTCTCTGGCGCGCATCTACGCTGAGGCCAGGAAGGTGGCATGGTTCGACCAGCAGAACG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 90 bp CCTTGGGCACGCTGGGTTTGGCCGCCTTCTTCACTTTCTTCGCGCTaGCAGCAGCCGCCGCCTTCTTGCTCTTGTGCGCGCGCCGCTCCG +
Preference number: 5 (lower is better)
Translates to: PWARWVWPPSSLSSR*QQPPPSCSCARAAP
Trigger: CGGAGCGGCGCGCGCACAAGAGCAAGAAGGCGGCGGCTGCTGCCAGCGCGAAGAAAGTGAAGAAGGCGGCCAAACCCAGCGTGCCCAAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS TCA 90 bp CTCCGCGCCGCTCCGCGCCGCCCTCCAGCTTCTTGCGGTTCAGCTTaGAGGATCCGTTGGCGCCGGTGCCCTTCACCTGCAGTAGCGTAT +
Preference number: 5 (lower is better)
Translates to: LRAAPRRPPASCGSA*RIRWRRCPSPAVAY
Trigger: ATACGCTACTGCAGGTGAAGGGCACCGGCGCCAACGGATCCTTCAAGCTGAACCGCAAGAAGCTGGAGGGCGGCGCGGAGCGGCGCGGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS GCA 90 bp TACTTGCCTGGCTGGTTCTTCTTGCGGTTCTTCCTTCTCTTGGGCTaGGTGGGCGCCGCAGAGCCGCCGGCCTTGGCCGTCTTGCGGGCC +
Preference number: 5 (lower is better)
Translates to: YLPGWFFLRFFLLLG*VGAAEPPALAVLRA
Trigger: GGCCCGCAAGACGGCCAAGGCCGGCGGCTCTGCGGCGCCCACGCAGCCCAAGAGAAGGAAGAACCGCAAGAAGAACCAGCCAGGCAAGTA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CAA 90 bp CAGGCCATTGGCGCCGCCGGGCCGGTAACCATGGCGACGGCCGTTGCCAAGGGTTTCTTGCGGTTCAGCTaGAAGGATCCGTTGGCGCCG +
Preference number: 5 (lower is better)
Translates to: QAIGAAGPVTMATAVAKGFLRFS*KDPLAP
Trigger: CGGCGCCAACGGATCCTTCAAGCTGAACCGCAAGAA...ACCCTTGGCAACGGCCGTCGCCATGGTTACCGGCCCGGCGGCGCCAATGGCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 90 bp GGCTGTACTTGCCTGGCTGGTTCTTCTTGCGGTTCTTCCTTCTCTTaGGCTGCGTGGGCGCCGCAGAGCCGCCGGCCTTGGCCGTCTTGC +
Preference number: 5 (lower is better)
Translates to: GCTCLAGSSCGSSFS*AAWAPQSRRPWPSC
Trigger: GCAAGACGGCCAAGGCCGGCGGCTCTGCGGCGCCCACGCAGCCCAAGAGAAGGAAGAACCGCAAGAAGAACCAGCCAGGCAAGTACAGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 90 bp AGATGCGCGCCAGAGACGAGCCGCCGCGCTCCCCCAGCTTGCGGATaGTCTCCACCACCAGCTGGCTGTACTTGCCTGGCTGGTTCTTCT +
Preference number: 5 (lower is better)
Translates to: RCAPETSRRAPPACG*SPPPAGCTCLAGSS
Trigger: AGAAGAACCAGCCAGGCAAGTACAGCCAGCTGGTGGTGGAGACCATCCGCAAGCTGGGGGAGCGCGGCGGCTCGTCTCTGGCGCGCATCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CAA 90 bp GGGCCGGTAACCATGGCGACGGCCGTTGCCAAGGGTGAGAGCCAATGGGGGCGTCCGCCCTCCAGCTTCTaGCGGTTCAGCTTGAAGGAT +
Preference number: 5 (lower is better)
Translates to: GPVTMATAVAKGESQWGRPPSSF*RFSLKD
Trigger: ATCCTTCAAGCTGAACCGCAAGAAGCTGGAGGGCGG...ACGCCCCCATTGGCTCTCACCCTTGGCAACGGCCGTCGCCATGGTTACCGGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS GCA 90 bp GATAGAGTACTTGAGGTAGGTGCGCCCGTTCTGCTGGTCGAACCATaGCACCTTCCTGGCCTCAGCGTAGATGCGCGCCAGAGACGAGCC +
Preference number: 5 (lower is better)
Translates to: DRVLEVGAPVLLVEP*HLPGLSVDARQRRA
Trigger: GGCTCGTCTCTGGCGCGCATCTACGCTGAGGCCAGGAAGGTGGCATGGTTCGACCAGCAGAACGGGCGCACCTACCTCAAGTACTCTATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 90 bp AGCTTGCGGATGGTCTCCACCACCAGCTGGCTGTACTTGCCTGGCTaGTTCTTCTTGCGGTTCTTCCTTCTCTTGGGCTGCGTGGGCGCC +
Preference number: 5 (lower is better)
Translates to: SLRMVSTTSWLYLPG*FFLRFFLLLGCVGA
Trigger: GGCGCCCACGCAGCCCAAGAGAAGGAAGAACCGCAAGAAGAACCAGCCAGGCAAGTACAGCCAGCTGGTGGTGGAGACCATCCGCAAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 90 bp CCCCAGCTTGCGGATGGTCTCCACCACCAGCTGGCTGTACTTGCCTaGCTGGTTCTTCTTGCGGTTCTTCCTTCTCTTGGGCTGCGTGGG +
Preference number: 5 (lower is better)
Translates to: PQLADGLHHQLAVLA*LVLLAVLPSLGLRG
Trigger: CCCACGCAGCCCAAGAGAAGGAAGAACCGCAAGAAGAACCAGCCAGGCAAGTACAGCCAGCTGGTGGTGGAGACCATCCGCAAGCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS GCA 90 bp TTGCGGTTCAGCTTGAAGGATCCGTTGGCGCCGGTGCCCTTCACCTaGAGTAGCGTATCGTTCTGCACCAGCGCCCGGATAGAGTACTTG +
Preference number: 5 (lower is better)
Translates to: LRFSLKDPLAPVPFT*SSVSFCTSARIEYL
Trigger: CAAGTACTCTATCCGGGCGCTGGTGCAGAACGATACGCTACTGCAGGTGAAGGGCACCGGCGCCAACGGATCCTTCAAGCTGAACCGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS-3UTR CAA 90 bp GGTGAGAGCCAATGGGGGCGTCGCCAGGGCCGTTTCAAAAACCTAAAGCAAACAACCAGCTGGCTGTACTaGCCTGGCTGGTTCTTCTTG +
Preference number: 5 (lower is better)
Translates to: GESQWGRRQGRFKNLKQTTSWLY*PGWFFL
Trigger: CAAGAAGAACCAGCCAGGCAAGTACAGCCAGCTGGT...TGTTTGCTTTAGGTTTTTGAAACGGCCCTGGCGACGCCCCCATTGGCTCTCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS GCA 72 bp GCCGCCTTCTTGCTCTTGTGCGCGCGCCGCTCCGGCTaGGGCCTGGCGGGCGTTCTGTCCGCCGCCGCCGTG +
Preference number: 6 (lower is better)
Translates to: AAFLLLCARRSG*GLAGVLSAAAV
Trigger: CACGGCGGCGGCGGACAGAACGCCCGCCAGGCCGCAGCCGGAGCGGCGCGCGCACAAGAGCAAGAAGGCGGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CAA 90 bp CTCTTGGGCTGCGTGGGCGCCGCAGAGCCGCCGGCCTTGGCCGTCTaGCGGGCCGTCCCGTCGGCGCTCGTTGGCGGCAGGGCCTCCTCA +
Preference number: 6 (lower is better)
Translates to: LLGCVGAAEPPALAV*RAVPSALVGGRASS
Trigger: TGAGGAGGCCCTGCCGCCAACGAGCGCCGACGGGACGGCCCGCAAGACGGCCAAGGCCGGCGGCTCTGCGGCGCCCACGCAGCCCAAGAG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CAA 72 bp TTCTTCGCGCTGGCAGCAGCCGCCGCCTTCTTGCTCTaGTGCGCGCGCCGCTCCGGCTGCGGCCTGGCGGGC +
Preference number: 6 (lower is better)
Translates to: FFALAAAAAFLL*CARRSGCGLAG
Trigger: GCCCGCCAGGCCGCAGCCGGAGCGGCGCGCGCACAAGAGCAAGAAGGCGGCGGCTGCTGCCAGCGCGAAGAA
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CAA 90 bp CTGGCCGCCGAAGCTCCGCGCCGCTCCGCGCCGCCCTCCAGCTTCTaGCGGTTCAGCTTGAAGGATCCGTTGGCGCCGGTGCCCTTCACC +
Preference number: 6 (lower is better)
Translates to: LAAEAPRRSAPPSSF*RFSLKDPLAPVPFT
Trigger: GGTGAAGGGCACCGGCGCCAACGGATCCTTCAAGCTGAACCGCAAGAAGCTGGAGGGCGGCGCGGAGCGGCGCGGAGCTTCGGCGGCCAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CAA 90 bp GCCGCCTTCTTCACTTTCTTCGCGCTGGCAGCAGCCGCCGCCTTCTaGCTCTTGTGCGCGCGCCGCTCCGGCTGCGGCCTGGCGGGCGTT +
Preference number: 6 (lower is better)
Translates to: AAFFTFFALAAAAAF*LLCARRSGCGLAGV
Trigger: AACGCCCGCCAGGCCGCAGCCGGAGCGGCGCGCGCACAAGAGCAAGAAGGCGGCGGCTGCTGCCAGCGCGAAGAAAGTGAAGAAGGCGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS GCA 72 bp TGCGCGCCAGAGACGAGCCGCCGCGCTCCCCCAGCTTaGGGATGGTCTCCACCACCAGCTGGCTGTACTTGC +
Preference number: 6 (lower is better)
Translates to: CAPETSRRAPPA*GWSPPPAGCTC
Trigger: GCAAGTACAGCCAGCTGGTGGTGGAGACCATCCGCAAGCTGGGGGAGCGCGGCGGCTCGTCTCTGGCGCGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CAA 90 bp GCTCCGCGCCGCTCCGCGCCGCCCTCCAGCTTCTTGCGGTTCAGCTaGAAGGATCCGTTGGCGCCGGTGCCCTTCACCTGCAGTAGCGTA +
Preference number: 6 (lower is better)
Translates to: APRRSAPPSSFLRFS*KDPLAPVPFTCSSV
Trigger: TACGCTACTGCAGGTGAAGGGCACCGGCGCCAACGGATCCTTCAAGCTGAACCGCAAGAAGCTGGAGGGCGGCGCGGAGCGGCGCGGAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CAA 72 bp ATGCGCGCCAGAGACGAGCCGCCGCGCTCCCCCAGCTaGCGGATGGTCTCCACCACCAGCTGGCTGTACTTG +
Preference number: 6 (lower is better)
Translates to: MRARDEPPRSPS*RMVSTTSWLYL
Trigger: CAAGTACAGCCAGCTGGTGGTGGAGACCATCCGCAAGCTGGGGGAGCGCGGCGGCTCGTCTCTGGCGCGCAT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CAA 72 bp CGCTCCGCGCCGCCCTCCAGCTTCTTGCGGTTCAGCTaGAAGGATCCGTTGGCGCCGGTGCCCTTCACCTGC +
Preference number: 6 (lower is better)
Translates to: RSAPPSSFLRFS*KDPLAPVPFTC
Trigger: GCAGGTGAAGGGCACCGGCGCCAACGGATCCTTCAAGCTGAACCGCAAGAAGCTGGAGGGCGGCGCGGAGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS TCA 72 bp GCTCCGCGCCGCCCTCCAGCTTCTTGCGGTTCAGCTTaGAGGATCCGTTGGCGCCGGTGCCCTTCACCTGCA +
Preference number: 6 (lower is better)
Translates to: APRRPPASCGSA*RIRWRRCPSPA
Trigger: TGCAGGTGAAGGGCACCGGCGCCAACGGATCCTTCAAGCTGAACCGCAAGAAGCTGGAGGGCGGCGCGGAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 72 bp GGTTCTTCTTGCGGTTCTTCCTTCTCTTGGGCTGCGTaGGCGCCGCAGAGCCGCCGGCCTTGGCCGTCTTGC +
Preference number: 6 (lower is better)
Translates to: GSSCGSSFSWAA*APQSRRPWPSC
Trigger: GCAAGACGGCCAAGGCCGGCGGCTCTGCGGCGCCCACGCAGCCCAAGAGAAGGAAGAACCGCAAGAAGAACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 72 bp TGCCTGGCTGGTTCTTCTTGCGGTTCTTCCTTCTCTTaGGCTGCGTGGGCGCCGCAGAGCCGCCGGCCTTGG +
Preference number: 6 (lower is better)
Translates to: CLAGSSCGSSFS*AAWAPQSRRPW
Trigger: CCAAGGCCGGCGGCTCTGCGGCGCCCACGCAGCCCAAGAGAAGGAAGAACCGCAAGAAGAACCAGCCAGGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 72 bp TGCGCCCGTTCTGCTGGTCGAACCATGCCACCTTCCTaGCCTCAGCGTAGATGCGCGCCAGAGACGAGCCGC +
Preference number: 6 (lower is better)
Translates to: CARSAGRTMPPS*PQRRCAPETSR
Trigger: GCGGCTCGTCTCTGGCGCGCATCTACGCTGAGGCCAGGAAGGTGGCATGGTTCGACCAGCAGAACGGGCGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 72 bp CGCTGGGTTTGGCCGCCTTCTTCACTTTCTTCGCGCTaGCAGCAGCCGCCGCCTTCTTGCTCTTGTGCGCGC +
Preference number: 6 (lower is better)
Translates to: RWVWPPSSLSSR*QQPPPSCSCAR
Trigger: GCGCGCACAAGAGCAAGAAGGCGGCGGCTGCTGCCAGCGCGAAGAAAGTGAAGAAGGCGGCCAAACCCAGCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CAA 72 bp TTGCCTGGCTGGTTCTTCTTGCGGTTCTTCCTTCTCTaGGGCTGCGTGGGCGCCGCAGAGCCGCCGGCCTTG +
Preference number: 6 (lower is better)
Translates to: LPGWFFLRFFLL*GCVGAAEPPAL
Trigger: CAAGGCCGGCGGCTCTGCGGCGCCCACGCAGCCCAAGAGAAGGAAGAACCGCAAGAAGAACCAGCCAGGCAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CAA 90 bp TGGCTGTACTTGCCTGGCTGGTTCTTCTTGCGGTTCTTCCTTCTCTaGGGCTGCGTGGGCGCCGCAGAGCCGCCGGCCTTGGCCGTCTTG +
Preference number: 6 (lower is better)
Translates to: WLYLPGWFFLRFFLL*GCVGAAEPPALAVL
Trigger: CAAGACGGCCAAGGCCGGCGGCTCTGCGGCGCCCACGCAGCCCAAGAGAAGGAAGAACCGCAAGAAGAACCAGCCAGGCAAGTACAGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS GCA 72 bp CTTGAGGTAGGTGCGCCCGTTCTGCTGGTCGAACCATaGCACCTTCCTGGCCTCAGCGTAGATGCGCGCCAG +
Preference number: 6 (lower is better)
Translates to: LEVGAPVLLVEP*HLPGLSVDARQ
Trigger: CTGGCGCGCATCTACGCTGAGGCCAGGAAGGTGGCATGGTTCGACCAGCAGAACGGGCGCACCTACCTCAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 72 bp ACTTGCGGCCCTTGGGCACCTTGGGCACGCTGGGTTTaGCCGCCTTCTTCACTTTCTTCGCGCTGGCAGCAG +
Preference number: 6 (lower is better)
Translates to: TCGPWAPWARWV*PPSSLSSRWQQ
Trigger: CTGCTGCCAGCGCGAAGAAAGTGAAGAAGGCGGCCAAACCCAGCGTGCCCAAGGTGCCCAAGGGCCGCAAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CAA 72 bp CACTTGCGGCCCTTGGGCACCTTGGGCACGCTGGGTTaGGCCGCCTTCTTCACTTTCTTCGCGCTGGCAGCA +
Preference number: 6 (lower is better)
Translates to: HLRPLGTLGTLG*AAFFTFFALAA
Trigger: TGCTGCCAGCGCGAAGAAAGTGAAGAAGGCGGCCAAACCCAGCGTGCCCAAGGTGCCCAAGGGCCGCAAGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CAA 90 bp ATGGTCTCCACCACCAGCTGGCTGTACTTGCCTGGCTGGTTCTTCTaGCGGTTCTTCCTTCTCTTGGGCTGCGTGGGCGCCGCAGAGCCG +
Preference number: 6 (lower is better)
Translates to: MVSTTSWLYLPGWFF*RFFLLLGCVGAAEP
Trigger: CGGCTCTGCGGCGCCCACGCAGCCCAAGAGAAGGAAGAACCGCAAGAAGAACCAGCCAGGCAAGTACAGCCAGCTGGTGGTGGAGACCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS CCA 72 bp CGCTCCCCCAGCTTGCGGATGGTCTCCACCACCAGCTaGCTGTACTTGCCTGGCTGGTTCTTCTTGCGGTTC +
Preference number: 6 (lower is better)
Translates to: RSPSLRMVSTTS*LYLPGWFFLRF
Trigger: GAACCGCAAGAAGAACCAGCCAGGCAAGTACAGCCAGCTGGTGGTGGAGACCATCCGCAAGCTGGGGGAGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7
CDS GCA 72 bp AGCTTGAAGGATCCGTTGGCGCCGGTGCCCTTCACCTaGAGTAGCGTATCGTTCTGCACCAGCGCCCGGATA +
Preference number: 6 (lower is better)
Translates to: SLKDPLAPVPFT*SSVSFCTSARI
Trigger: TATCCGGGCGCTGGTGCAGAACGATACGCTACTGCAGGTGAAGGGCACCGGCGCCAACGGATCCTTCAAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056403.7